Wall clock time and date at job start Mon Mar 30 2020 00:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 119.99647 * 2 1 4 4 O 1.21689 * 119.99920 * 180.02562 * 3 2 1 5 5 C 1.46370 * 120.00161 * 0.02562 * 3 2 1 6 6 H 1.08005 * 120.00095 * 0.02562 * 5 3 2 7 7 C 1.40049 * 120.00226 * 179.97438 * 5 3 2 8 8 N 1.30675 * 119.99665 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00177 * 180.27813 * 7 5 3 10 10 H 1.48502 * 109.46954 * 269.72256 * 9 7 5 11 11 H 1.48498 * 109.46839 * 29.72245 * 9 7 5 12 12 H 1.48496 * 109.47101 * 149.72464 * 9 7 5 13 13 C 1.46497 * 120.00382 * 180.02562 * 2 1 3 14 14 H 1.08996 * 110.01920 * 175.92627 * 13 2 1 15 15 C 1.54272 * 110.02992 * 297.36547 * 13 2 1 16 16 C 1.54889 * 104.19568 * 95.67390 * 15 13 2 17 17 C 1.54890 * 102.74758 * 37.94480 * 16 15 13 18 18 C 1.53872 * 110.03471 * 54.52863 * 13 2 1 19 19 H 1.09003 * 110.03358 * 0.02562 * 18 13 2 20 20 C 1.53004 * 110.03453 * 121.43036 * 18 13 2 21 21 C 1.53007 * 109.46731 * 54.88724 * 20 18 13 22 22 C 1.52996 * 109.47242 * 174.88629 * 20 18 13 23 23 C 1.52998 * 109.46966 * 294.89246 * 20 18 13 24 24 H 1.08996 * 109.47733 * 94.68309 * 1 2 3 25 25 H 1.09010 * 109.46875 * 214.67811 * 1 2 3 26 26 H 1.08996 * 109.47243 * 334.67225 * 1 2 3 27 27 H 0.96999 * 119.99762 * 180.02562 * 8 7 5 28 28 H 1.08996 * 110.48316 * 214.35221 * 15 13 2 29 29 H 1.09000 * 110.48564 * 336.99442 * 15 13 2 30 30 H 1.09002 * 110.75519 * 279.63103 * 16 15 13 31 31 H 1.09000 * 110.75526 * 156.25663 * 16 15 13 32 32 H 1.09002 * 110.48552 * 203.37909 * 17 16 15 33 33 H 1.08997 * 110.60013 * 80.79100 * 17 16 15 34 34 H 1.08997 * 109.46968 * 58.08865 * 21 20 18 35 35 H 1.08992 * 109.47115 * 178.09216 * 21 20 18 36 36 H 1.08998 * 109.47096 * 298.09507 * 21 20 18 37 37 H 1.09001 * 109.46948 * 60.00662 * 22 20 18 38 38 H 1.09000 * 109.46888 * 180.02562 * 22 20 18 39 39 H 1.08994 * 109.47115 * 300.00162 * 22 20 18 40 40 H 1.08996 * 109.47556 * 59.99563 * 23 20 18 41 41 H 1.09005 * 109.46913 * 180.02562 * 23 20 18 42 42 H 1.08998 * 109.46933 * 299.98750 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3557 1.1673 -0.0005 5 6 1.4069 2.4349 0.0006 6 1 0.3268 2.4348 0.0014 7 6 2.1070 3.6478 0.0011 8 7 3.4138 3.6478 0.0016 9 14 1.1730 5.2655 0.0097 10 1 0.9255 5.7015 -1.3881 11 1 -0.1245 5.0841 0.7088 12 1 1.9755 6.2967 0.7151 13 6 2.1975 -1.2687 -0.0006 14 1 3.2687 -1.0809 -0.0732 15 6 1.8848 -2.0600 1.2863 16 6 0.7486 -3.0272 0.8708 17 6 1.1569 -3.4369 -0.5661 18 6 1.7347 -2.1441 -1.1783 19 1 0.9652 -1.6249 -1.7497 20 6 2.9232 -2.4779 -2.0821 21 6 4.0325 -3.1227 -1.2485 22 6 2.4756 -3.4507 -3.1749 23 6 3.4502 -1.1942 -2.7265 24 1 -0.3634 -0.0839 -1.0242 25 1 -0.3633 -0.8452 0.5848 26 1 -0.3633 0.9288 0.4396 27 1 3.8987 4.4878 0.0024 28 1 2.7615 -2.6192 1.6127 29 1 1.5447 -1.3880 2.0742 30 1 -0.2133 -2.5144 0.8677 31 1 0.7220 -3.8967 1.5275 32 1 0.2855 -3.7697 -1.1300 33 1 1.9154 -4.2192 -0.5409 34 1 3.6472 -4.0188 -0.7621 35 1 4.8655 -3.3914 -1.8979 36 1 4.3748 -2.4172 -0.4914 37 1 1.6854 -2.9913 -3.7687 38 1 3.3225 -3.6888 -3.8184 39 1 2.1002 -4.3651 -2.7157 40 1 3.7691 -0.5013 -1.9479 41 1 4.2967 -1.4321 -3.3707 42 1 2.6601 -0.7350 -3.3204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335633991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:17 Heat of formation + Delta-G solvation = -75.123768 kcal Electronic energy + Delta-G solvation = -20542.658504 eV Core-core repulsion = 17714.067926 eV Total energy + Delta-G solvation = -2828.590577 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.15790 -38.77785 -36.36737 -34.67045 -34.32931 -30.03066 -28.87325 -28.23768 -28.06369 -27.62820 -26.44054 -22.66537 -21.71080 -20.43022 -18.94119 -18.39244 -17.77033 -16.94564 -16.46515 -15.83549 -15.65300 -15.37000 -14.94460 -14.61057 -14.26691 -13.87287 -13.48436 -13.33397 -13.26368 -13.18951 -12.97211 -12.77036 -12.75584 -12.50948 -12.39831 -12.18712 -12.14793 -12.02240 -11.88162 -11.74579 -11.60058 -11.15742 -11.06048 -11.02570 -10.90758 -9.67348 -8.90761 -8.25579 -6.80454 1.37516 1.39172 1.53713 2.23797 2.50126 2.95953 3.61578 3.67359 3.82420 3.88351 4.16238 4.19462 4.26346 4.52056 4.55925 4.66970 4.69685 4.74576 4.76008 4.80545 4.87229 4.91050 4.91666 4.95236 5.01697 5.04877 5.08599 5.16506 5.23578 5.30569 5.32766 5.38475 5.41178 5.44904 5.51493 5.66473 5.69790 5.87124 6.19628 6.58927 6.90693 7.51568 8.53821 8.72727 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.027781 B = 0.006803 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.626939 B = 4115.023350 C = 4519.152519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.638 5.638 3 C 0.542 3.458 4 O -0.628 6.628 5 C -0.573 4.573 6 H 0.089 0.911 7 C 0.029 3.971 8 N -0.822 5.822 9 Si 0.991 3.009 10 H -0.263 1.263 11 H -0.248 1.248 12 H -0.274 1.274 13 C 0.140 3.860 14 H 0.059 0.941 15 C -0.134 4.134 16 C -0.116 4.116 17 C -0.109 4.109 18 C -0.084 4.084 19 H 0.059 0.941 20 C -0.058 4.058 21 C -0.140 4.140 22 C -0.130 4.130 23 C -0.138 4.138 24 H 0.038 0.962 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.271 0.729 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.031 0.969 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.024 0.976 41 H 0.057 0.943 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.057 -14.151 -2.396 15.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.374 5.374 3 C 0.347 3.653 4 O -0.515 6.515 5 C -0.610 4.610 6 H 0.107 0.893 7 C -0.186 4.186 8 N -0.452 5.452 9 Si 0.811 3.189 10 H -0.188 1.188 11 H -0.172 1.172 12 H -0.199 1.199 13 C 0.035 3.965 14 H 0.077 0.923 15 C -0.172 4.172 16 C -0.153 4.153 17 C -0.146 4.146 18 C -0.103 4.103 19 H 0.078 0.922 20 C -0.058 4.058 21 C -0.197 4.197 22 C -0.187 4.187 23 C -0.195 4.195 24 H 0.056 0.944 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.251 -14.074 -2.392 15.584 hybrid contribution 0.155 1.419 0.037 1.428 sum -6.096 -12.655 -2.354 14.243 Atomic orbital electron populations 1.21602 0.80522 1.02343 1.00288 1.47813 1.06332 1.04911 1.78319 1.18559 0.86639 0.84227 0.75856 1.90526 1.16127 1.87518 1.57339 1.21554 0.94721 0.90216 1.54472 0.89333 1.26947 0.95465 1.04789 0.91354 1.70207 1.09432 1.28576 1.36974 0.85116 0.78922 0.75545 0.79323 1.18775 1.17163 1.19889 1.21587 0.96419 0.83664 0.94793 0.92290 1.22725 0.99761 0.98060 0.96702 1.22572 0.97264 0.98544 0.96904 1.22471 1.00995 0.95943 0.95232 1.22105 0.96705 0.96290 0.95221 0.92236 1.20513 0.95043 0.94590 0.95666 1.21947 0.97896 1.00455 0.99384 1.21807 1.01084 0.98661 0.97186 1.21839 1.00148 0.97765 0.99744 0.94390 0.90435 0.92083 0.91874 0.91211 0.93603 0.91149 0.89645 0.90073 0.89743 0.90243 0.92179 0.95026 0.93156 0.92254 0.90530 0.95675 0.92363 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.56 9.23 127.77 1.18 4.74 16 2 N -0.64 -29.68 2.71 -823.64 -2.23 -31.92 16 3 C 0.54 32.17 7.61 86.36 0.66 32.83 16 4 O -0.63 -42.77 13.86 -4.31 -0.06 -42.83 16 5 C -0.57 -33.23 8.75 24.83 0.22 -33.01 16 6 H 0.09 4.63 5.90 -2.91 -0.02 4.61 16 7 C 0.03 1.67 5.50 85.30 0.47 2.14 16 8 N -0.82 -51.56 11.83 21.84 0.26 -51.30 16 9 Si 0.99 42.07 29.56 68.60 2.03 44.10 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 11 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 13 C 0.14 5.53 1.95 45.72 0.09 5.62 16 14 H 0.06 2.85 3.80 -2.39 -0.01 2.84 16 15 C -0.13 -4.34 6.06 31.67 0.19 -4.14 16 16 C -0.12 -2.69 6.52 31.89 0.21 -2.48 16 17 C -0.11 -2.41 5.05 31.67 0.16 -2.25 16 18 C -0.08 -2.58 1.76 -10.07 -0.02 -2.60 16 19 H 0.06 2.01 6.85 -2.39 -0.02 2.00 16 20 C -0.06 -1.70 0.52 -52.18 -0.03 -1.73 16 21 C -0.14 -3.85 7.92 71.98 0.57 -3.28 16 22 C -0.13 -2.87 8.20 71.98 0.59 -2.28 16 23 C -0.14 -5.16 8.28 71.98 0.60 -4.56 16 24 H 0.04 1.32 7.61 -2.39 -0.02 1.30 16 25 H 0.08 2.36 4.99 -2.38 -0.01 2.34 16 26 H 0.06 2.39 5.84 -2.39 -0.01 2.38 16 27 H 0.27 15.49 8.29 -92.71 -0.77 14.72 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 1.66 8.04 -2.39 -0.02 1.64 16 30 H 0.07 1.61 5.92 -2.39 -0.01 1.60 16 31 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.63 5.49 -2.39 -0.01 1.62 16 34 H 0.08 1.76 6.15 -2.39 -0.01 1.74 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.03 1.06 6.24 -2.39 -0.01 1.04 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 1.35 6.93 -2.39 -0.02 1.34 16 40 H 0.02 1.19 6.29 -2.39 -0.02 1.17 16 41 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -75.88 310.10 5.88 -70.00 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 1.00 Total: 22.97 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.88 Total: -11.01 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -1.98 Total: -83.22 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -0.06 Total: -42.83 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -75.88 5.88 -70.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335633991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.126 kcal (2) G-P(sol) polarization free energy of solvation -75.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds