Wall clock time and date at job start Sun Mar 29 2020 23:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46906 * 2 1 4 4 C 1.52998 * 109.47317 * 120.00392 * 2 1 3 5 5 C 1.53004 * 109.46876 * 179.97438 * 4 2 1 6 6 C 1.52992 * 109.47322 * 300.00163 * 5 4 2 7 7 C 1.52998 * 109.47278 * 60.00084 * 6 5 4 8 8 H 1.08998 * 109.47156 * 60.00259 * 7 6 5 9 9 C 1.50700 * 109.47092 * 180.02562 * 7 6 5 10 10 O 1.21283 * 120.00275 * 119.99695 * 9 7 6 11 11 N 1.34777 * 120.00075 * 299.99595 * 9 7 6 12 12 C 1.46499 * 120.00065 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47198 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47211 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 C 1.52996 * 109.46992 * 299.99968 * 7 6 5 23 23 H 1.09005 * 109.47129 * 299.99238 * 1 2 3 24 24 H 1.09000 * 109.47764 * 59.99803 * 1 2 3 25 25 H 1.09006 * 109.46938 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46970 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47496 * 300.00578 * 3 2 1 28 28 H 1.09005 * 109.46605 * 60.00440 * 3 2 1 29 29 H 1.08998 * 109.47126 * 60.00462 * 4 2 1 30 30 H 1.08996 * 109.47009 * 299.99723 * 4 2 1 31 31 H 1.09000 * 109.46887 * 179.97438 * 5 4 2 32 32 H 1.09007 * 109.46700 * 60.00036 * 5 4 2 33 33 H 1.08998 * 109.47284 * 299.99884 * 6 5 4 34 34 H 1.09004 * 109.47096 * 180.02562 * 6 5 4 35 35 H 0.97000 * 120.00140 * 0.02562 * 11 9 7 36 36 H 1.09000 * 109.47602 * 60.00059 * 12 11 9 37 37 H 1.09007 * 109.47337 * 299.99774 * 12 11 9 38 38 H 1.09000 * 109.47211 * 59.99311 * 13 12 11 39 39 H 1.09007 * 109.46376 * 299.99853 * 13 12 11 40 40 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.47439 * 180.02562 * 22 7 6 42 42 H 1.08998 * 109.47408 * 300.00137 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7218 1.2487 6 6 4.0795 -1.4433 -0.0005 7 6 3.5694 -0.7219 -1.2497 8 1 3.9331 0.3056 -1.2499 9 6 4.0708 -1.4330 -2.4802 10 8 3.2820 -1.8936 -3.2781 11 7 5.3957 -1.5570 -2.6941 12 6 5.8830 -2.2477 -3.8906 13 6 7.4130 -2.2493 -3.8909 14 6 7.9144 -2.9593 -5.1221 15 1 7.2119 -3.3688 -5.8329 16 6 9.2697 -3.0915 -5.3377 17 7 10.1250 -2.5931 -4.4719 18 14 9.8911 -3.9784 -6.8598 19 1 8.7354 -4.4427 -7.6686 20 1 10.7212 -3.0504 -7.6691 21 1 10.7106 -5.1475 -6.4516 22 6 2.0395 -0.7215 -1.2493 23 1 -0.3634 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 1.6768 -1.7490 1.2491 30 1 1.6767 -0.2075 2.1391 31 1 3.9334 -1.2353 2.1389 32 1 3.9337 0.3058 1.2486 33 1 3.7159 -2.4708 -0.0004 34 1 5.1695 -1.4440 -0.0006 35 1 6.0266 -1.1889 -2.0558 36 1 5.5197 -1.7335 -4.7804 37 1 5.5190 -3.2752 -3.8907 38 1 7.7760 -2.7638 -3.0012 39 1 7.7774 -1.2220 -3.8907 40 1 11.0785 -2.6865 -4.6235 41 1 1.6760 -0.2080 -2.1395 42 1 1.6758 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342651451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:40 Heat of formation + Delta-G solvation = -86.450374 kcal Electronic energy + Delta-G solvation = -19054.027992 eV Core-core repulsion = 16224.946257 eV Total energy + Delta-G solvation = -2829.081736 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29175 -38.31522 -34.83049 -33.53081 -32.71491 -31.13462 -29.44344 -27.49317 -26.45304 -25.07734 -23.21520 -21.69441 -20.91842 -19.69583 -18.51529 -16.77037 -16.34436 -15.54904 -15.07262 -14.77878 -14.69020 -14.41322 -14.29544 -13.84265 -13.49590 -13.06247 -12.85345 -12.44175 -12.30410 -12.18666 -11.99203 -11.59822 -11.58915 -11.18427 -11.12011 -11.07167 -11.02546 -10.62715 -10.52762 -10.31941 -10.22919 -10.12882 -9.72347 -9.38578 -9.07083 -8.52004 -8.32432 -6.09310 -4.11986 3.07295 3.28356 3.35873 3.41000 3.73817 4.41633 4.50663 4.54643 4.62566 4.91365 5.01752 5.17749 5.21639 5.25225 5.27795 5.35746 5.42990 5.52029 5.55591 5.62903 5.70858 5.79980 5.86657 5.90423 5.91674 6.05508 6.10578 6.15897 6.20906 6.33262 6.36943 6.39093 6.42811 6.75967 6.97677 7.52815 7.62542 7.89309 8.07522 8.28923 8.72401 8.94444 9.52933 11.02340 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.047547 B = 0.003666 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.746484 B = 7635.195581 C = 7926.694554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 C -0.146 4.146 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.111 4.111 7 C -0.108 4.108 8 H 0.095 0.905 9 C 0.508 3.492 10 O -0.553 6.553 11 N -0.723 5.723 12 C 0.121 3.879 13 C 0.012 3.988 14 C -0.521 4.521 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.086 4.086 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.396 0.604 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.261 0.739 41 H 0.068 0.932 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.790 6.869 13.290 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.067 4.067 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.149 4.149 7 C -0.129 4.129 8 H 0.113 0.887 9 C 0.293 3.707 10 O -0.431 6.431 11 N -0.372 5.372 12 C -0.001 4.001 13 C -0.025 4.025 14 C -0.559 4.559 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.124 4.124 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.230 0.770 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.155 6.540 12.721 20.839 hybrid contribution 0.879 -0.292 -0.535 1.070 sum -14.276 6.248 12.186 19.782 Atomic orbital electron populations 1.21844 0.94612 1.01760 1.01532 1.20570 0.95260 0.95526 0.95299 1.21992 1.01510 0.95314 1.01497 1.21611 0.95551 1.00475 0.96993 1.21573 0.95685 1.00950 0.97456 1.21526 1.00711 0.99658 0.92995 1.21388 0.97649 1.00580 0.93330 0.88661 1.20619 0.82745 0.80066 0.87257 1.90656 1.55466 1.49384 1.47593 1.46356 1.06479 1.58040 1.26359 1.21700 0.97916 0.95461 0.85057 1.19326 0.87256 0.97881 0.98045 1.21101 0.91788 1.36329 1.06712 0.92221 1.24998 0.96916 0.95621 0.96786 1.69963 1.02088 1.45581 1.35700 0.86462 0.78890 0.79397 0.82864 1.19578 1.20927 1.20934 1.21372 0.92704 1.01326 0.96953 0.92846 0.92617 0.92668 0.91992 0.92714 0.92900 0.91938 0.92121 0.91779 0.91476 0.91426 0.91256 0.76997 0.92695 0.92702 0.95968 0.95987 0.92914 0.91341 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.47 37.16 0.31 -0.87 16 2 C -0.07 -0.61 0.77 -154.51 -0.12 -0.73 16 3 C -0.15 -1.24 7.78 37.16 0.29 -0.95 16 4 C -0.11 -0.93 4.73 -26.73 -0.13 -1.06 16 5 C -0.12 -1.04 5.65 -26.73 -0.15 -1.19 16 6 C -0.11 -1.20 5.10 -26.74 -0.14 -1.33 16 7 C -0.11 -1.34 2.25 -91.77 -0.21 -1.55 16 8 H 0.10 1.06 6.43 -51.93 -0.33 0.73 16 9 C 0.51 8.71 7.15 -10.98 -0.08 8.63 16 10 O -0.55 -11.61 15.98 5.55 0.09 -11.52 16 11 N -0.72 -12.81 5.45 -60.29 -0.33 -13.14 16 12 C 0.12 2.63 5.61 -4.04 -0.02 2.60 16 13 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 14 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 15 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 18 Si 0.90 21.49 29.54 -169.99 -5.02 16.46 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.09 -1.02 3.30 -26.73 -0.09 -1.11 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.52 4.81 -51.93 -0.25 0.28 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.55 6.43 -51.93 -0.33 0.21 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.73 7.57 -51.93 -0.39 0.34 16 35 H 0.40 6.10 7.89 -40.82 -0.32 5.78 16 36 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 42 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 327.27 15.07 4.93 4.93 Total: -1.00 -31.05 327.27 -7.98 -39.03 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.51 Total: 0.43 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -0.88 Total: -10.72 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.41 Total: -38.62 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.05 -7.98 -39.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342651451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.423 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds