Wall clock time and date at job start Sun Mar 29 2020 23:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46906 * 2 1 4 4 C 1.52998 * 109.47317 * 120.00392 * 2 1 3 5 5 C 1.53004 * 109.46876 * 179.97438 * 4 2 1 6 6 C 1.52992 * 109.47322 * 300.00163 * 5 4 2 7 7 C 1.52998 * 109.47278 * 60.00084 * 6 5 4 8 8 H 1.08998 * 109.47156 * 60.00259 * 7 6 5 9 9 C 1.50700 * 109.47092 * 180.02562 * 7 6 5 10 10 O 1.21283 * 120.00275 * 119.99695 * 9 7 6 11 11 N 1.34777 * 120.00075 * 299.99595 * 9 7 6 12 12 C 1.46499 * 120.00065 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47198 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47211 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 C 1.52996 * 109.46992 * 299.99968 * 7 6 5 23 23 H 1.09005 * 109.47129 * 299.99238 * 1 2 3 24 24 H 1.09000 * 109.47764 * 59.99803 * 1 2 3 25 25 H 1.09006 * 109.46938 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46970 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47496 * 300.00578 * 3 2 1 28 28 H 1.09005 * 109.46605 * 60.00440 * 3 2 1 29 29 H 1.08998 * 109.47126 * 60.00462 * 4 2 1 30 30 H 1.08996 * 109.47009 * 299.99723 * 4 2 1 31 31 H 1.09000 * 109.46887 * 179.97438 * 5 4 2 32 32 H 1.09007 * 109.46700 * 60.00036 * 5 4 2 33 33 H 1.08998 * 109.47284 * 299.99884 * 6 5 4 34 34 H 1.09004 * 109.47096 * 180.02562 * 6 5 4 35 35 H 0.97000 * 120.00140 * 0.02562 * 11 9 7 36 36 H 1.09000 * 109.47602 * 60.00059 * 12 11 9 37 37 H 1.09007 * 109.47337 * 299.99774 * 12 11 9 38 38 H 1.09000 * 109.47211 * 59.99311 * 13 12 11 39 39 H 1.09007 * 109.46376 * 299.99853 * 13 12 11 40 40 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.47439 * 180.02562 * 22 7 6 42 42 H 1.08998 * 109.47408 * 300.00137 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7218 1.2487 6 6 4.0795 -1.4433 -0.0005 7 6 3.5694 -0.7219 -1.2497 8 1 3.9331 0.3056 -1.2499 9 6 4.0708 -1.4330 -2.4802 10 8 3.2820 -1.8936 -3.2781 11 7 5.3957 -1.5570 -2.6941 12 6 5.8830 -2.2477 -3.8906 13 6 7.4130 -2.2493 -3.8909 14 6 7.9144 -2.9593 -5.1221 15 1 7.2119 -3.3688 -5.8329 16 6 9.2697 -3.0915 -5.3377 17 7 10.1250 -2.5931 -4.4719 18 14 9.8911 -3.9784 -6.8598 19 1 8.7354 -4.4427 -7.6686 20 1 10.7212 -3.0504 -7.6691 21 1 10.7106 -5.1475 -6.4516 22 6 2.0395 -0.7215 -1.2493 23 1 -0.3634 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 1.6768 -1.7490 1.2491 30 1 1.6767 -0.2075 2.1391 31 1 3.9334 -1.2353 2.1389 32 1 3.9337 0.3058 1.2486 33 1 3.7159 -2.4708 -0.0004 34 1 5.1695 -1.4440 -0.0006 35 1 6.0266 -1.1889 -2.0558 36 1 5.5197 -1.7335 -4.7804 37 1 5.5190 -3.2752 -3.8907 38 1 7.7760 -2.7638 -3.0012 39 1 7.7774 -1.2220 -3.8907 40 1 11.0785 -2.6865 -4.6235 41 1 1.6760 -0.2080 -2.1395 42 1 1.6758 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342651451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:40 Heat of formation + Delta-G solvation = -104.904210 kcal Electronic energy + Delta-G solvation = -19054.828211 eV Core-core repulsion = 16224.946257 eV Total energy + Delta-G solvation = -2829.881954 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42107 -39.49406 -36.60422 -34.92163 -34.21373 -32.16095 -31.21516 -28.15261 -27.35404 -26.82717 -24.52996 -22.79435 -22.50081 -21.05692 -19.33725 -18.56902 -17.90792 -16.85273 -16.55183 -16.47969 -15.76925 -15.55354 -15.37912 -14.87193 -14.78320 -14.34255 -14.13228 -13.93783 -13.46997 -13.23216 -12.97287 -12.88515 -12.75663 -12.56361 -12.40983 -12.30535 -12.26360 -11.93084 -11.85856 -11.67457 -11.47690 -11.35322 -11.03028 -10.91279 -10.62225 -10.56928 -10.01198 -8.25574 -6.36152 1.39927 1.40924 1.54114 1.66524 2.27107 2.45715 3.09016 3.62389 3.69007 3.74840 4.08811 4.14840 4.28117 4.34960 4.44760 4.47009 4.48743 4.54115 4.60996 4.75179 4.82843 4.84905 4.90520 5.01998 5.10326 5.11957 5.16825 5.21945 5.23974 5.28951 5.29252 5.40462 5.46834 5.49461 5.53322 5.56267 5.68563 5.77441 6.14993 6.64029 6.77017 7.29686 7.33313 8.86431 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.047547 B = 0.003666 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.746484 B = 7635.195581 C = 7926.694554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C -0.146 4.146 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.110 4.110 7 C -0.097 4.097 8 H 0.116 0.884 9 C 0.505 3.495 10 O -0.594 6.594 11 N -0.717 5.717 12 C 0.139 3.861 13 C 0.024 3.976 14 C -0.548 4.548 15 H 0.057 0.943 16 C 0.008 3.992 17 N -0.925 5.925 18 Si 0.965 3.035 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.083 4.083 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.410 0.590 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.266 0.734 41 H 0.052 0.948 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.957 7.554 14.430 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.062 4.062 3 C -0.203 4.203 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.148 4.148 7 C -0.118 4.118 8 H 0.134 0.866 9 C 0.293 3.707 10 O -0.475 6.475 11 N -0.368 5.368 12 C 0.016 3.984 13 C -0.014 4.014 14 C -0.586 4.586 15 H 0.075 0.925 16 C -0.191 4.191 17 N -0.565 5.565 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.122 4.122 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.246 0.754 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.323 7.241 13.891 21.913 hybrid contribution 0.908 -0.505 -0.887 1.366 sum -14.415 6.736 13.004 20.550 Atomic orbital electron populations 1.21844 0.94016 1.01702 1.02157 1.20546 0.95760 0.95851 0.94048 1.21995 1.01618 0.94554 1.02113 1.21619 0.95453 1.00278 0.97165 1.21565 0.95694 1.01440 0.96436 1.21549 1.00974 0.99081 0.93167 1.21410 0.97906 1.00999 0.91451 0.86621 1.21515 0.81812 0.79258 0.88122 1.90635 1.56330 1.51131 1.49374 1.46195 1.07312 1.57823 1.25456 1.21204 0.95704 0.95132 0.86403 1.19129 0.89182 0.96455 0.96611 1.21494 0.92385 1.36983 1.07758 0.92499 1.25864 0.97063 0.96254 0.99931 1.70057 1.02562 1.46451 1.37430 0.85394 0.78337 0.78316 0.78984 1.19096 1.20108 1.20125 1.21358 0.92266 1.00484 0.98049 0.91174 0.93035 0.93126 0.91790 0.93184 0.91283 0.92570 0.90233 0.90510 0.90220 0.92705 0.90825 0.75433 0.93840 0.93901 0.97248 0.97268 0.92489 0.92962 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.47 71.98 0.61 -1.52 16 2 C -0.06 -1.03 0.77 -52.18 -0.04 -1.07 16 3 C -0.15 -2.09 7.78 71.98 0.56 -1.53 16 4 C -0.11 -1.56 4.73 30.60 0.14 -1.42 16 5 C -0.11 -1.66 5.65 30.59 0.17 -1.48 16 6 C -0.11 -2.20 5.10 30.59 0.16 -2.05 16 7 C -0.10 -2.32 2.25 -11.54 -0.03 -2.34 16 8 H 0.12 2.35 6.43 -2.39 -0.02 2.34 16 9 C 0.50 17.44 7.15 87.66 0.63 18.07 16 10 O -0.59 -25.61 15.98 -3.04 -0.05 -25.66 16 11 N -0.72 -25.55 5.45 -463.04 -2.52 -28.08 16 12 C 0.14 6.19 5.61 86.38 0.48 6.68 16 13 C 0.02 1.21 5.09 29.85 0.15 1.36 16 14 C -0.55 -31.03 9.11 25.60 0.23 -30.80 16 15 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 16 C 0.01 0.44 5.46 84.65 0.46 0.90 16 17 N -0.93 -54.36 13.29 21.45 0.28 -54.08 16 18 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 22 C -0.08 -1.97 3.30 30.59 0.10 -1.87 16 23 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 24 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.06 0.89 4.81 -2.38 -0.01 0.88 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.00 6.43 -2.38 -0.02 0.99 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.42 7.57 -2.38 -0.02 1.40 16 35 H 0.41 12.43 7.89 -92.71 -0.73 11.70 16 36 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 40 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 42 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 Total: -1.00 -66.79 327.27 3.62 -63.17 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.24 Total: 15.78 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 3.64 Total: -17.08 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -2.24 Total: -82.15 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.05 Total: -25.66 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -66.79 3.62 -63.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342651451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.734 kcal (2) G-P(sol) polarization free energy of solvation -66.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds