Wall clock time and date at job start Sun Mar 29 2020 23:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47070 * 2 1 4 4 C 1.52998 * 109.47339 * 119.99518 * 2 1 3 5 5 C 1.53005 * 109.47159 * 60.00158 * 4 2 1 6 6 C 1.53000 * 109.46730 * 60.00041 * 5 4 2 7 7 C 1.53000 * 109.47430 * 300.00239 * 6 5 4 8 8 H 1.09007 * 109.46641 * 300.00357 * 7 6 5 9 9 N 1.46499 * 109.47070 * 180.02562 * 7 6 5 10 10 C 1.34777 * 120.00199 * 85.00207 * 9 7 6 11 11 O 1.21283 * 119.99750 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27479 * 10 9 7 13 13 C 1.52996 * 109.47159 * 179.72352 * 12 10 9 14 14 C 1.50697 * 109.47491 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99437 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00278 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00172 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00140 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47213 * 89.99904 * 18 16 14 20 20 H 1.48497 * 109.47216 * 209.99799 * 18 16 14 21 21 H 1.48504 * 109.47159 * 330.00245 * 18 16 14 22 22 C 1.52995 * 109.47023 * 59.99951 * 7 6 5 23 23 H 1.08998 * 109.47301 * 299.99857 * 1 2 3 24 24 H 1.09002 * 109.47321 * 60.00458 * 1 2 3 25 25 H 1.09001 * 109.47139 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47107 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46675 * 299.99938 * 3 2 1 28 28 H 1.08998 * 109.47164 * 59.99418 * 3 2 1 29 29 H 1.08998 * 109.47434 * 300.00543 * 4 2 1 30 30 H 1.09004 * 109.47835 * 180.02562 * 4 2 1 31 31 H 1.08999 * 109.47285 * 300.00474 * 5 4 2 32 32 H 1.09002 * 109.47187 * 180.02562 * 5 4 2 33 33 H 1.09005 * 109.46716 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47384 * 60.00347 * 6 5 4 35 35 H 0.97000 * 119.99484 * 264.99304 * 9 7 6 36 36 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 37 37 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 38 38 H 1.09004 * 109.47066 * 299.99797 * 13 12 10 39 39 H 1.09000 * 109.47234 * 59.99288 * 13 12 10 40 40 H 0.96998 * 120.00586 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.47294 * 60.00050 * 22 7 6 42 42 H 1.09000 * 109.47292 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5300 -2.1637 1.2494 6 6 2.0401 -2.8849 0.0002 7 6 1.5301 -2.1638 -1.2491 8 1 0.4401 -2.1638 -1.2491 9 7 2.0181 -2.8548 -2.4452 10 6 1.3409 -3.9115 -2.9364 11 8 0.3277 -4.2905 -2.3880 12 6 1.8462 -4.6261 -4.1632 13 6 0.9048 -5.7832 -4.5035 14 6 1.4097 -6.4974 -5.7306 15 1 2.3117 -6.1596 -6.2192 16 6 0.7203 -7.5821 -6.2295 17 7 1.1613 -8.2058 -7.3002 18 14 -0.8393 -8.1669 -5.3840 19 1 -2.0115 -7.4675 -5.9689 20 1 -0.9888 -9.6314 -5.5791 21 1 -0.7576 -7.8667 -3.9320 22 6 2.0401 -0.7213 -1.2492 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6765 1.9564 0.8899 29 1 1.6766 -0.2073 2.1392 30 1 3.1300 -0.7208 1.2496 31 1 0.4400 -2.1638 1.2493 32 1 1.8930 -2.6773 2.1397 33 1 1.6772 -3.9128 0.0005 34 1 3.1301 -2.8849 0.0002 35 1 2.8285 -2.5517 -2.8837 36 1 1.8827 -3.9291 -5.0005 37 1 2.8459 -5.0155 -3.9709 38 1 0.8683 -6.4801 -3.6662 39 1 -0.0949 -5.3937 -4.6958 40 1 0.6761 -8.9687 -7.6515 41 1 3.1300 -0.7212 -1.2491 42 1 1.6764 -0.2074 -2.1389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360454039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:04 Heat of formation + Delta-G solvation = -79.720084 kcal Electronic energy + Delta-G solvation = -19144.048630 eV Core-core repulsion = 16315.258742 eV Total energy + Delta-G solvation = -2828.789888 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22318 -38.60944 -34.63926 -33.44069 -32.67306 -31.30850 -29.59102 -27.57630 -26.56878 -25.98328 -22.70046 -21.74402 -20.63891 -19.78415 -18.48733 -17.15736 -16.19758 -15.93739 -15.13932 -14.89055 -14.76929 -14.40896 -14.02966 -13.79390 -13.62059 -13.13618 -12.75934 -12.54178 -12.47942 -12.25714 -12.12997 -11.67201 -11.58554 -11.39430 -11.26962 -11.15154 -10.93497 -10.71720 -10.38871 -10.20930 -10.11954 -10.00973 -9.75589 -9.18410 -9.10303 -8.77631 -8.48668 -6.01172 -3.99725 3.18263 3.39452 3.45652 3.48973 3.57238 4.40664 4.46976 4.52809 4.57927 4.93465 4.93718 5.14158 5.15889 5.26774 5.30294 5.34396 5.42280 5.43720 5.47628 5.54017 5.63792 5.72335 5.73414 5.83437 5.84637 5.98069 6.05376 6.05842 6.11393 6.13563 6.16473 6.23580 6.37704 6.72762 6.77765 7.39615 7.46698 7.80164 7.87259 8.52771 8.72797 9.02150 9.62066 11.11718 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.043242 B = 0.003982 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.363255 B = 7029.535792 C = 7211.816586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.061 4.061 3 C -0.140 4.140 4 C -0.108 4.108 5 C -0.119 4.119 6 C -0.130 4.130 7 C 0.142 3.858 8 H 0.088 0.912 9 N -0.739 5.739 10 C 0.510 3.490 11 O -0.541 6.541 12 C -0.123 4.123 13 C 0.002 3.998 14 C -0.524 4.524 15 H 0.072 0.928 16 C 0.068 3.932 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.261 1.261 22 C -0.115 4.115 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.397 0.603 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.023 0.977 39 H 0.018 0.982 40 H 0.263 0.737 41 H 0.066 0.934 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.336 18.981 16.762 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.168 4.168 7 C 0.038 3.962 8 H 0.106 0.894 9 N -0.392 5.392 10 C 0.299 3.701 11 O -0.418 6.418 12 C -0.163 4.163 13 C -0.036 4.036 14 C -0.562 4.562 15 H 0.090 0.910 16 C -0.133 4.133 17 N -0.543 5.543 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.185 1.185 22 C -0.153 4.153 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.230 0.770 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.547 18.539 17.028 25.300 hybrid contribution -0.332 -0.235 0.072 0.413 sum 2.215 18.304 17.099 25.146 Atomic orbital electron populations 1.22018 0.94479 1.02499 1.01621 1.20477 0.95894 0.94968 0.94798 1.21860 1.00891 0.95264 1.01761 1.21624 1.00501 0.95505 0.96967 1.21545 1.01299 0.95243 0.97607 1.21927 1.00689 1.00123 0.94088 1.20936 1.00140 0.90537 0.84623 0.89416 1.46256 1.29692 1.33329 1.29874 1.21515 0.83386 0.79216 0.86002 1.90641 1.25119 1.65013 1.60987 1.21667 1.01987 0.99268 0.93369 1.19360 0.94532 0.92578 0.97140 1.21126 1.11651 1.13282 1.10163 0.90967 1.24974 0.97549 0.96127 0.94624 1.69913 1.40098 1.21616 1.22711 0.86792 0.83845 0.77571 0.81329 1.20248 1.21456 1.18531 1.21858 1.00874 0.94563 0.97976 0.92732 0.92647 0.91717 0.92685 0.92607 0.92638 0.92012 0.91965 0.91486 0.91939 0.91337 0.92026 0.76968 0.89731 0.89693 0.95867 0.96315 0.92740 0.91490 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 7.78 37.15 0.29 -1.01 16 2 C -0.06 -0.49 0.77 -154.51 -0.12 -0.61 16 3 C -0.14 -0.97 8.47 37.16 0.31 -0.65 16 4 C -0.11 -0.87 4.73 -26.73 -0.13 -0.99 16 5 C -0.12 -1.13 5.65 -26.73 -0.15 -1.28 16 6 C -0.13 -1.51 5.49 -26.73 -0.15 -1.65 16 7 C 0.14 1.73 2.18 -67.93 -0.15 1.58 16 8 H 0.09 1.26 5.86 -51.93 -0.30 0.96 16 9 N -0.74 -10.03 5.08 -53.81 -0.27 -10.30 16 10 C 0.51 9.41 7.79 -10.98 -0.09 9.33 16 11 O -0.54 -12.11 15.64 5.55 0.09 -12.03 16 12 C -0.12 -2.42 5.64 -27.88 -0.16 -2.58 16 13 C 0.00 0.05 3.33 -27.89 -0.09 -0.05 16 14 C -0.52 -15.19 9.66 -34.44 -0.33 -15.53 16 15 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 18 Si 0.88 22.85 27.47 -169.99 -4.67 18.18 16 19 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 22 C -0.11 -1.05 4.20 -26.73 -0.11 -1.16 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.65 4.81 -51.93 -0.25 0.40 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.67 6.43 -51.93 -0.33 0.34 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 4.25 8.60 -40.82 -0.35 3.90 16 36 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.02 0.61 7.15 -51.93 -0.37 0.24 16 39 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 324.75 15.07 4.89 4.89 Total: -1.00 -33.28 324.75 -7.66 -40.94 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.51 Total: -1.52 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -0.97 Total: -12.65 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.50 Total: -37.82 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.67 Total: 18.18 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.28 -7.66 -40.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360454039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.778 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds