Wall clock time and date at job start Sun Mar 29 2020 23:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00145 * 2 1 4 4 H 1.48492 * 109.47115 * 269.99491 * 3 2 1 5 5 H 1.48502 * 109.47196 * 29.99903 * 3 2 1 6 6 H 1.48502 * 109.46843 * 149.99483 * 3 2 1 7 7 C 1.37881 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99614 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99827 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46640 * 180.02562 * 9 7 2 11 11 C 1.46848 * 111.00098 * 293.95513 * 10 9 7 12 12 C 1.53040 * 109.51981 * 185.84212 * 11 10 9 13 13 C 1.53124 * 109.27904 * 300.81554 * 12 11 10 14 14 C 1.53115 * 109.15620 * 57.65865 * 13 12 11 15 15 H 1.08995 * 109.50693 * 62.32868 * 14 13 12 16 16 C 1.53005 * 109.50269 * 182.40496 * 14 13 12 17 17 C 1.53000 * 109.46915 * 294.32943 * 16 14 13 18 18 H 1.08996 * 110.44072 * 52.36696 * 17 16 14 19 19 C 1.54811 * 110.48708 * 289.67806 * 17 16 14 20 20 C 1.54988 * 102.09493 * 220.44423 * 19 17 16 21 21 O 1.44376 * 103.49105 * 37.02350 * 20 19 17 22 22 C 1.43739 * 106.97570 * 319.94034 * 21 20 19 23 23 C 1.46848 * 110.99597 * 58.20515 * 10 9 7 24 24 H 0.97011 * 119.99805 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47030 * 60.00703 * 9 7 2 26 26 H 1.08993 * 109.46899 * 299.99834 * 9 7 2 27 27 H 1.09000 * 109.46218 * 65.82361 * 11 10 9 28 28 H 1.09000 * 109.46223 * 305.85743 * 11 10 9 29 29 H 1.09007 * 109.49845 * 180.88259 * 12 11 10 30 30 H 1.08996 * 109.50878 * 60.76285 * 12 11 10 31 31 H 1.08999 * 109.52314 * 297.75698 * 13 12 11 32 32 H 1.08990 * 109.52339 * 177.56220 * 13 12 11 33 33 H 1.09002 * 109.47311 * 174.32726 * 16 14 13 34 34 H 1.09002 * 109.46953 * 54.32708 * 16 14 13 35 35 H 1.09003 * 110.91075 * 338.64860 * 19 17 16 36 36 H 1.09005 * 110.90377 * 102.24267 * 19 17 16 37 37 H 1.09001 * 110.61851 * 278.52595 * 20 19 17 38 38 H 1.09003 * 110.61914 * 155.52990 * 20 19 17 39 39 H 1.08997 * 109.88276 * 267.08737 * 22 21 20 40 40 H 1.09004 * 109.88018 * 145.93198 * 22 21 20 41 41 H 1.09005 * 109.49740 * 54.16307 * 23 10 9 42 42 H 1.09004 * 109.43414 * 294.19313 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 3.6512 -3.2611 1.2536 12 6 4.2994 -4.6472 1.2794 13 6 3.8047 -5.4591 0.0791 14 6 4.1386 -4.7038 -1.2103 15 1 5.2198 -4.6014 -1.3026 16 6 3.5946 -5.4792 -2.4120 17 6 4.3363 -6.8115 -2.5373 18 1 4.3118 -7.3514 -1.5907 19 6 5.7972 -6.5776 -2.9932 20 6 6.0117 -7.7345 -4.0020 21 8 4.7348 -7.8426 -4.6671 22 6 3.7221 -7.6671 -3.6622 23 6 3.4959 -3.3156 -1.1646 24 1 -0.4850 0.8402 -0.0004 25 1 3.8745 -0.6801 0.8912 26 1 3.8751 -0.6805 -0.8888 27 1 2.5682 -3.3652 1.3201 28 1 4.0123 -2.6755 2.0990 29 1 4.0266 -5.1592 2.2023 30 1 5.3831 -4.5433 1.2268 31 1 2.7259 -5.5964 0.1518 32 1 4.2968 -6.4315 0.0694 33 1 3.7430 -4.8939 -3.3195 34 1 2.5303 -5.6677 -2.2712 35 1 5.9015 -5.6096 -3.4834 36 1 6.4854 -6.6622 -2.1521 37 1 6.2516 -8.6603 -3.4791 38 1 6.7959 -7.4812 -4.7155 39 1 3.4198 -8.6369 -3.2672 40 1 2.8607 -7.1539 -4.0898 41 1 3.7442 -2.7703 -2.0752 42 1 2.4135 -3.4189 -1.0871 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367379760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:27 Heat of formation + Delta-G solvation = -65.772435 kcal Electronic energy + Delta-G solvation = -19505.699073 eV Core-core repulsion = 16677.514000 eV Total energy + Delta-G solvation = -2828.185073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.76025 -38.35105 -34.89207 -32.93896 -31.69788 -30.68111 -29.38417 -27.33961 -25.49325 -23.78145 -22.67921 -21.69633 -21.14022 -19.74000 -19.05105 -16.79206 -16.54734 -16.07090 -15.12336 -15.02408 -14.62267 -14.18227 -14.00609 -13.60181 -13.32371 -13.13118 -12.83655 -12.55755 -12.21625 -12.10041 -11.75971 -11.48080 -11.28731 -11.07927 -10.97162 -10.84361 -10.64364 -10.48311 -10.39472 -10.20165 -10.01803 -9.84786 -9.71240 -9.58375 -9.36026 -8.60052 -7.16528 -6.11149 -4.10764 3.27251 3.34835 3.38764 3.86033 4.39130 4.42573 4.63474 4.78305 4.98379 5.05962 5.12775 5.22468 5.22571 5.31197 5.39934 5.44987 5.59979 5.63706 5.67139 5.70793 5.90356 5.93881 6.00147 6.03882 6.10313 6.19090 6.28012 6.29463 6.40660 6.50318 6.54382 6.71075 6.78535 6.80310 6.94611 6.99224 7.07813 7.57345 8.08589 8.16310 8.44847 8.91458 9.52112 11.01818 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.030814 B = 0.004704 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.447869 B = 5950.817133 C = 6247.633474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.072 3.928 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.153 3.847 10 N -0.535 5.535 11 C 0.061 3.939 12 C -0.116 4.116 13 C -0.112 4.112 14 C -0.084 4.084 15 H 0.071 0.929 16 C -0.105 4.105 17 C -0.121 4.121 18 H 0.084 0.916 19 C -0.149 4.149 20 C 0.045 3.955 21 O -0.382 6.382 22 C 0.048 3.952 23 C 0.069 3.931 24 H 0.263 0.737 25 H 0.028 0.972 26 H 0.024 0.976 27 H 0.041 0.959 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.616 -14.046 -3.455 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.589 4.589 8 H 0.092 0.908 9 C 0.026 3.974 10 N -0.258 5.258 11 C -0.067 4.067 12 C -0.154 4.154 13 C -0.150 4.150 14 C -0.102 4.102 15 H 0.090 0.910 16 C -0.142 4.142 17 C -0.140 4.140 18 H 0.103 0.897 19 C -0.187 4.187 20 C -0.032 4.032 21 O -0.301 6.301 22 C -0.028 4.028 23 C -0.060 4.060 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.931 -13.940 -3.702 18.097 hybrid contribution -0.659 1.014 0.349 1.259 sum 10.272 -12.925 -3.353 16.847 Atomic orbital electron populations 1.69932 1.06374 1.26973 1.50551 1.24975 0.94684 0.99220 0.94200 0.86799 0.80415 0.83579 0.78640 1.20188 1.21323 1.18845 1.21708 0.90736 0.94634 1.51785 0.90763 1.20175 0.94576 0.85825 0.96789 1.62330 1.58618 1.03527 1.01357 1.21876 0.98575 0.93285 0.93000 1.21607 1.00574 0.96063 0.97130 1.21629 1.00700 0.97688 0.94961 1.21224 1.00533 0.95047 0.93438 0.91025 1.21665 0.99505 0.94175 0.98903 1.22612 0.95012 0.97417 0.98937 0.89741 1.23218 0.96440 0.99707 0.99291 1.23558 0.86927 0.97409 0.95282 1.88851 1.15235 1.93691 1.32352 1.23298 0.91984 0.98638 0.88915 1.21895 0.97916 0.92058 0.94092 0.92709 0.95433 0.95800 0.94101 0.92016 0.92590 0.92032 0.92418 0.92791 0.91534 0.91686 0.90097 0.90302 0.92522 0.89251 0.92696 0.89660 0.91972 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.45 27.47 -169.99 -4.67 16.79 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.55 -15.28 8.29 -34.44 -0.29 -15.57 16 8 H 0.07 2.24 6.09 -52.49 -0.32 1.92 16 9 C 0.15 3.70 4.20 -4.97 -0.02 3.68 16 10 N -0.54 -11.11 4.86 -236.11 -1.15 -12.25 16 11 C 0.06 1.17 5.14 -3.83 -0.02 1.15 16 12 C -0.12 -1.73 6.09 -26.65 -0.16 -1.90 16 13 C -0.11 -1.56 5.01 -26.61 -0.13 -1.69 16 14 C -0.08 -1.22 2.29 -90.54 -0.21 -1.42 16 15 H 0.07 1.04 7.48 -51.93 -0.39 0.65 16 16 C -0.10 -1.32 3.86 -26.73 -0.10 -1.42 16 17 C -0.12 -1.28 2.93 -89.09 -0.26 -1.54 16 18 H 0.08 0.85 6.40 -51.93 -0.33 0.52 16 19 C -0.15 -1.47 5.95 -24.73 -0.15 -1.62 16 20 C 0.04 0.43 7.72 38.21 0.29 0.73 16 21 O -0.38 -4.74 11.52 -35.23 -0.41 -5.15 16 22 C 0.05 0.52 7.37 37.73 0.28 0.80 16 23 C 0.07 1.31 4.30 -3.83 -0.02 1.30 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.03 0.68 7.12 -51.93 -0.37 0.31 16 26 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 27 H 0.04 0.88 7.03 -51.93 -0.37 0.52 16 28 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 29 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.63 6.58 -51.93 -0.34 0.29 16 33 H 0.07 0.87 7.99 -51.93 -0.41 0.45 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.86 7.77 -51.93 -0.40 0.46 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.92 7.69 -51.93 -0.40 0.52 16 41 H 0.06 1.21 8.12 -51.93 -0.42 0.78 16 42 H 0.04 0.96 6.57 -51.93 -0.34 0.61 16 LS Contribution 315.08 15.07 4.75 4.75 Total: -1.00 -30.11 315.08 -9.04 -39.15 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.46 Total: -1.11 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -0.88 Total: -15.55 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.37 Total: -38.88 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.41 Total: -5.15 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.11 -9.04 -39.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367379760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.620 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds