Wall clock time and date at job start Sun Mar 29 2020 23:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00145 * 2 1 4 4 H 1.48492 * 109.47115 * 269.99491 * 3 2 1 5 5 H 1.48502 * 109.47196 * 29.99903 * 3 2 1 6 6 H 1.48502 * 109.46843 * 149.99483 * 3 2 1 7 7 C 1.37881 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99614 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99827 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46640 * 180.02562 * 9 7 2 11 11 C 1.46848 * 111.00098 * 293.95513 * 10 9 7 12 12 C 1.53040 * 109.51981 * 185.84212 * 11 10 9 13 13 C 1.53124 * 109.27904 * 300.81554 * 12 11 10 14 14 C 1.53115 * 109.15620 * 57.65865 * 13 12 11 15 15 H 1.08995 * 109.50693 * 62.32868 * 14 13 12 16 16 C 1.53005 * 109.50269 * 182.40496 * 14 13 12 17 17 C 1.53000 * 109.46915 * 294.32943 * 16 14 13 18 18 H 1.08996 * 110.44072 * 52.36696 * 17 16 14 19 19 C 1.54811 * 110.48708 * 289.67806 * 17 16 14 20 20 C 1.54988 * 102.09493 * 220.44423 * 19 17 16 21 21 O 1.44376 * 103.49105 * 37.02350 * 20 19 17 22 22 C 1.43739 * 106.97570 * 319.94034 * 21 20 19 23 23 C 1.46848 * 110.99597 * 58.20515 * 10 9 7 24 24 H 0.97011 * 119.99805 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47030 * 60.00703 * 9 7 2 26 26 H 1.08993 * 109.46899 * 299.99834 * 9 7 2 27 27 H 1.09000 * 109.46218 * 65.82361 * 11 10 9 28 28 H 1.09000 * 109.46223 * 305.85743 * 11 10 9 29 29 H 1.09007 * 109.49845 * 180.88259 * 12 11 10 30 30 H 1.08996 * 109.50878 * 60.76285 * 12 11 10 31 31 H 1.08999 * 109.52314 * 297.75698 * 13 12 11 32 32 H 1.08990 * 109.52339 * 177.56220 * 13 12 11 33 33 H 1.09002 * 109.47311 * 174.32726 * 16 14 13 34 34 H 1.09002 * 109.46953 * 54.32708 * 16 14 13 35 35 H 1.09003 * 110.91075 * 338.64860 * 19 17 16 36 36 H 1.09005 * 110.90377 * 102.24267 * 19 17 16 37 37 H 1.09001 * 110.61851 * 278.52595 * 20 19 17 38 38 H 1.09003 * 110.61914 * 155.52990 * 20 19 17 39 39 H 1.08997 * 109.88276 * 267.08737 * 22 21 20 40 40 H 1.09004 * 109.88018 * 145.93198 * 22 21 20 41 41 H 1.09005 * 109.49740 * 54.16307 * 23 10 9 42 42 H 1.09004 * 109.43414 * 294.19313 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 3.6512 -3.2611 1.2536 12 6 4.2994 -4.6472 1.2794 13 6 3.8047 -5.4591 0.0791 14 6 4.1386 -4.7038 -1.2103 15 1 5.2198 -4.6014 -1.3026 16 6 3.5946 -5.4792 -2.4120 17 6 4.3363 -6.8115 -2.5373 18 1 4.3118 -7.3514 -1.5907 19 6 5.7972 -6.5776 -2.9932 20 6 6.0117 -7.7345 -4.0020 21 8 4.7348 -7.8426 -4.6671 22 6 3.7221 -7.6671 -3.6622 23 6 3.4959 -3.3156 -1.1646 24 1 -0.4850 0.8402 -0.0004 25 1 3.8745 -0.6801 0.8912 26 1 3.8751 -0.6805 -0.8888 27 1 2.5682 -3.3652 1.3201 28 1 4.0123 -2.6755 2.0990 29 1 4.0266 -5.1592 2.2023 30 1 5.3831 -4.5433 1.2268 31 1 2.7259 -5.5964 0.1518 32 1 4.2968 -6.4315 0.0694 33 1 3.7430 -4.8939 -3.3195 34 1 2.5303 -5.6677 -2.2712 35 1 5.9015 -5.6096 -3.4834 36 1 6.4854 -6.6622 -2.1521 37 1 6.2516 -8.6603 -3.4791 38 1 6.7959 -7.4812 -4.7155 39 1 3.4198 -8.6369 -3.2672 40 1 2.8607 -7.1539 -4.0898 41 1 3.7442 -2.7703 -2.0752 42 1 2.4135 -3.4189 -1.0871 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367379760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:26 Heat of formation + Delta-G solvation = -85.805192 kcal Electronic energy + Delta-G solvation = -19506.567758 eV Core-core repulsion = 16677.514000 eV Total energy + Delta-G solvation = -2829.053758 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.73902 -39.68094 -36.28313 -34.68101 -33.34489 -31.80511 -30.28752 -29.25144 -26.65000 -25.51781 -23.45345 -23.14787 -22.51394 -20.94294 -20.48977 -18.85292 -17.42325 -16.93233 -16.76703 -16.10538 -15.91506 -15.78748 -15.41456 -15.13584 -14.66713 -14.47727 -14.10608 -13.89020 -13.60482 -13.48054 -13.03777 -12.97907 -12.81583 -12.33238 -12.24041 -12.08156 -12.02395 -11.84532 -11.76211 -11.67586 -11.56430 -11.33596 -11.04986 -10.88539 -10.80619 -10.50717 -8.98269 -8.33884 -6.39116 1.33840 1.34934 1.47167 2.31892 3.01235 3.09160 3.25526 3.65410 3.74653 3.93546 4.03225 4.11953 4.17508 4.34352 4.38800 4.41824 4.56437 4.60459 4.66606 4.77418 4.82914 4.86166 4.89431 4.93431 4.97165 5.00578 5.01253 5.05376 5.11729 5.17457 5.20464 5.24604 5.31642 5.36436 5.45006 5.47935 5.65163 5.99531 6.09610 6.35459 6.47210 6.67883 7.28150 8.82482 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.030814 B = 0.004704 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.447869 B = 5950.817133 C = 6247.633474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.550 4.550 8 H 0.032 0.968 9 C 0.158 3.842 10 N -0.529 5.529 11 C 0.059 3.941 12 C -0.107 4.107 13 C -0.110 4.110 14 C -0.071 4.071 15 H 0.084 0.916 16 C -0.099 4.099 17 C -0.113 4.113 18 H 0.099 0.901 19 C -0.147 4.147 20 C 0.042 3.958 21 O -0.408 6.408 22 C 0.045 3.955 23 C 0.071 3.929 24 H 0.266 0.734 25 H 0.030 0.970 26 H 0.027 0.973 27 H 0.003 0.997 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.374 -14.963 -3.141 20.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.588 4.588 8 H 0.051 0.949 9 C 0.030 3.970 10 N -0.252 5.252 11 C -0.070 4.070 12 C -0.145 4.145 13 C -0.147 4.147 14 C -0.089 4.089 15 H 0.103 0.897 16 C -0.137 4.137 17 C -0.132 4.132 18 H 0.117 0.883 19 C -0.185 4.185 20 C -0.034 4.034 21 O -0.328 6.328 22 C -0.031 4.031 23 C -0.058 4.058 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.022 0.978 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 13.708 -14.880 -3.387 20.513 hybrid contribution -1.585 1.241 0.240 2.027 sum 12.123 -13.639 -3.147 18.517 Atomic orbital electron populations 1.70085 1.08359 1.28173 1.52246 1.25941 0.95536 1.03478 0.93814 0.85669 0.79520 0.78264 0.79247 1.19184 1.20894 1.16926 1.21910 0.92787 0.93136 1.51007 0.94928 1.20058 0.91831 0.88336 0.96759 1.62398 1.57762 1.02383 1.02617 1.21975 0.96765 0.96076 0.92156 1.21574 1.01002 0.93198 0.98688 1.21645 1.00187 0.99093 0.93818 1.21124 1.00656 0.92245 0.94908 0.89732 1.21586 0.99284 0.95273 0.97573 1.22545 0.95216 0.95835 0.99590 0.88278 1.23222 0.96033 0.99335 0.99908 1.23737 0.86104 0.98058 0.95534 1.88827 1.16540 1.93853 1.33560 1.23346 0.91646 0.99357 0.88759 1.21934 0.95966 0.94804 0.93084 0.92511 0.95227 0.95519 0.97839 0.92065 0.90453 0.90388 0.93952 0.89082 0.92418 0.92654 0.91151 0.88510 0.90874 0.88226 0.91251 0.90442 0.92855 0.97713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 2 C 0.01 0.60 5.47 84.66 0.46 1.06 16 3 Si 0.95 44.37 27.47 68.60 1.88 46.26 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 7 C -0.55 -31.74 8.29 25.60 0.21 -31.53 16 8 H 0.03 2.11 6.09 -2.91 -0.02 2.09 16 9 C 0.16 7.67 4.20 85.56 0.36 8.03 16 10 N -0.53 -21.97 4.86 -900.90 -4.37 -26.35 16 11 C 0.06 2.25 5.14 86.33 0.44 2.69 16 12 C -0.11 -2.94 6.09 30.65 0.19 -2.75 16 13 C -0.11 -2.80 5.01 30.67 0.15 -2.65 16 14 C -0.07 -1.96 2.29 -10.74 -0.02 -1.98 16 15 H 0.08 2.20 7.48 -2.39 -0.02 2.18 16 16 C -0.10 -2.42 3.86 30.60 0.12 -2.30 16 17 C -0.11 -2.12 2.93 -9.80 -0.03 -2.15 16 18 H 0.10 1.60 6.40 -2.39 -0.02 1.58 16 19 C -0.15 -2.47 5.95 31.89 0.19 -2.28 16 20 C 0.04 0.69 7.72 72.66 0.56 1.25 16 21 O -0.41 -9.45 11.52 -148.98 -1.72 -11.16 16 22 C 0.05 0.91 7.37 72.35 0.53 1.44 16 23 C 0.07 2.75 4.30 86.33 0.37 3.12 16 24 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 25 H 0.03 1.43 7.12 -2.39 -0.02 1.41 16 26 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 27 H 0.00 0.15 7.03 -2.39 -0.02 0.13 16 28 H 0.06 2.31 8.06 -2.39 -0.02 2.29 16 29 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.72 6.58 -2.39 -0.02 1.71 16 33 H 0.06 1.50 7.99 -2.39 -0.02 1.48 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.34 7.77 -2.39 -0.02 1.32 16 36 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.63 7.69 -2.39 -0.02 1.61 16 41 H 0.05 2.12 8.12 -2.38 -0.02 2.10 16 42 H 0.00 0.21 6.57 -2.38 -0.02 0.20 16 Total: -1.00 -67.52 315.08 0.54 -66.98 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.91 Total: 11.78 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 3.54 Total: -28.05 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -4.08 Total: -85.81 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.72 Total: -11.16 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.26 kcal Total: -67.52 0.54 -66.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367379760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.823 kcal (2) G-P(sol) polarization free energy of solvation -67.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds