Wall clock time and date at job start Mon Mar 30 2020 00:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47371 * 2 1 4 4 C 1.53001 * 109.46922 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46922 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47382 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99658 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00452 * 179.97438 * 6 5 4 9 9 C 1.46926 * 120.63302 * 180.02562 * 8 6 5 10 10 C 1.53191 * 108.89109 * 233.67613 * 9 8 6 11 11 C 1.53035 * 109.31327 * 305.29292 * 10 9 8 12 12 C 1.50709 * 109.45964 * 181.37529 * 11 10 9 13 13 H 1.07997 * 119.99916 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99864 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00107 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99894 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47204 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47178 * 120.00317 * 16 14 12 19 19 H 1.48507 * 109.47028 * 240.00067 * 16 14 12 20 20 C 1.53038 * 109.54175 * 61.36680 * 11 10 9 21 21 C 1.47207 * 120.81153 * 0.14103 * 8 6 5 22 22 H 1.09001 * 109.46551 * 300.00431 * 1 2 3 23 23 H 1.08995 * 109.46991 * 59.99666 * 1 2 3 24 24 H 1.08999 * 109.47582 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46551 * 239.99569 * 2 1 3 26 26 H 1.09003 * 109.46667 * 120.00284 * 2 1 3 27 27 H 1.08998 * 109.47350 * 59.99789 * 3 2 1 28 28 H 1.08996 * 109.46626 * 299.99895 * 3 2 1 29 29 H 1.08998 * 109.47498 * 59.99612 * 4 3 2 30 30 H 1.09004 * 109.46843 * 299.99247 * 4 3 2 31 31 H 1.08998 * 109.47350 * 59.99522 * 5 4 3 32 32 H 1.09003 * 109.47457 * 299.99533 * 5 4 3 33 33 H 1.09002 * 109.58861 * 113.81616 * 9 8 6 34 34 H 1.08996 * 109.58519 * 353.53507 * 9 8 6 35 35 H 1.09003 * 109.49975 * 65.24379 * 10 9 8 36 36 H 1.09000 * 109.49553 * 185.30642 * 10 9 8 37 37 H 1.09004 * 109.45942 * 301.34050 * 11 10 9 38 38 H 0.97004 * 120.00396 * 180.02562 * 15 14 12 39 39 H 1.09002 * 109.49557 * 58.58503 * 20 11 10 40 40 H 1.08996 * 109.50003 * 178.68400 * 20 11 10 41 41 H 1.08996 * 109.53610 * 6.53712 * 21 8 6 42 42 H 1.09002 * 109.68003 * 246.23180 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0802 2.8848 0.0000 6 6 5.5872 2.8848 0.0000 7 8 6.1935 1.8344 -0.0009 8 7 6.2611 4.0519 0.0000 9 6 7.7303 4.0680 -0.0006 10 6 8.2173 4.9317 1.1672 11 6 7.5764 6.3182 1.0730 12 6 8.0794 7.1815 2.2012 13 1 8.7850 6.7813 2.9142 14 6 7.6387 8.4822 2.3232 15 7 6.7799 8.9697 1.4547 16 14 8.2616 9.5521 3.7221 17 1 9.2134 8.7735 4.5547 18 1 8.9516 10.7431 3.1649 19 1 7.1153 9.9903 4.5583 20 6 6.0549 6.1866 1.1713 21 6 5.5433 5.3371 0.0031 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6768 1.9563 0.8899 28 1 1.6768 1.9562 -0.8900 29 1 3.9331 0.9286 -0.8908 30 1 3.9337 0.9284 0.8892 31 1 3.7172 3.3981 0.8904 32 1 3.7166 3.3992 -0.8896 33 1 8.0908 4.4869 -0.9401 34 1 8.1069 3.0517 0.1147 35 1 7.9335 4.4630 2.1095 36 1 9.3021 5.0278 1.1209 37 1 7.8405 6.7763 0.1198 38 1 6.4701 9.8850 1.5402 39 1 5.7914 5.7061 2.1136 40 1 5.6005 7.1763 1.1276 41 1 4.4749 5.1575 0.1221 42 1 5.7235 5.8604 -0.9359 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397272855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:29 Heat of formation + Delta-G solvation = -91.194157 kcal Electronic energy + Delta-G solvation = -18983.387886 eV Core-core repulsion = 16154.100444 eV Total energy + Delta-G solvation = -2829.287442 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.10918 -38.50843 -36.80836 -35.31310 -33.54140 -32.66284 -31.63233 -28.63689 -27.53050 -24.82909 -24.02756 -23.07549 -21.83590 -21.25355 -19.64619 -18.56820 -17.81619 -17.02320 -16.77143 -16.46932 -16.02585 -15.03485 -14.90859 -14.82395 -14.50390 -14.41612 -14.09202 -13.92028 -13.78036 -13.27687 -13.10661 -12.85217 -12.78224 -12.50697 -12.42658 -12.14935 -11.98008 -11.84726 -11.79951 -11.62001 -11.47104 -11.34330 -11.00535 -10.93281 -10.63057 -10.38986 -9.52911 -8.08187 -6.21162 1.40055 1.43547 1.53384 1.67673 2.13854 2.44086 3.18341 3.58133 3.89952 4.04442 4.10586 4.26933 4.28618 4.34197 4.38639 4.48298 4.50764 4.56504 4.66565 4.74988 4.78834 4.86826 4.90623 4.97295 4.98960 5.08303 5.14213 5.18560 5.25705 5.26272 5.39220 5.43622 5.47993 5.55212 5.57479 5.66200 5.98848 6.14075 6.39474 6.55686 6.88074 7.22125 7.46524 8.95373 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.031586 B = 0.004075 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.242231 B = 6868.728076 C = 7399.239420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.098 4.098 5 C -0.134 4.134 6 C 0.504 3.496 7 O -0.594 6.594 8 N -0.607 5.607 9 C 0.115 3.885 10 C -0.113 4.113 11 C 0.045 3.955 12 C -0.535 4.535 13 H 0.045 0.955 14 C 0.018 3.982 15 N -0.910 5.910 16 Si 0.948 3.052 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.279 1.279 20 C -0.116 4.116 21 C 0.114 3.886 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.040 0.960 36 H 0.061 0.939 37 H 0.003 0.997 38 H 0.262 0.738 39 H 0.028 0.972 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.048 -10.999 -4.290 16.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.136 4.136 5 C -0.173 4.173 6 C 0.295 3.705 7 O -0.476 6.476 8 N -0.339 5.339 9 C -0.007 4.007 10 C -0.151 4.151 11 C 0.026 3.974 12 C -0.573 4.573 13 H 0.063 0.937 14 C -0.181 4.181 15 N -0.550 5.550 16 Si 0.775 3.225 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.205 1.205 20 C -0.155 4.155 21 C -0.008 4.008 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.124 0.876 32 H 0.133 0.867 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.022 0.978 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.099 0.901 41 H 0.122 0.878 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.827 -11.366 -4.333 16.284 hybrid contribution 0.774 0.924 0.858 1.479 sum -10.053 -10.442 -3.475 14.905 Atomic orbital electron populations 1.21767 0.95032 1.01920 1.02108 1.21535 0.96484 0.96624 1.01829 1.21605 0.93317 0.97372 1.02915 1.21294 0.96085 0.94159 1.02046 1.21771 0.89050 1.00570 1.05920 1.21437 0.91929 0.82373 0.74751 1.90612 1.71686 1.32249 1.53049 1.48423 1.07069 1.06778 1.71654 1.21540 0.80101 1.00369 0.98733 1.21845 0.99879 0.96713 0.96685 1.18616 0.92677 0.90773 0.95309 1.21563 1.25735 0.97468 1.12513 0.93679 1.25617 0.95301 0.98940 0.98213 1.69945 1.32437 1.15791 1.36827 0.85656 0.78265 0.78784 0.79817 1.19854 1.20673 1.20471 1.21800 0.98733 0.99695 0.95242 1.21990 0.96907 0.82500 0.99396 0.92575 0.92312 0.92425 0.92208 0.92549 0.91331 0.90827 0.92470 0.93084 0.87644 0.86705 0.91369 0.90523 0.94162 0.92014 0.97839 0.92880 0.95316 0.90066 0.87766 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.28 16 2 C -0.13 -2.02 5.93 30.59 0.18 -1.84 16 3 C -0.11 -1.91 5.21 30.59 0.16 -1.75 16 4 C -0.10 -2.19 4.50 30.59 0.14 -2.05 16 5 C -0.13 -3.13 4.05 29.85 0.12 -3.01 16 6 C 0.50 16.78 7.70 87.66 0.68 17.46 16 7 O -0.59 -23.68 15.39 -3.04 -0.05 -23.73 16 8 N -0.61 -21.08 2.98 -818.12 -2.44 -23.52 16 9 C 0.12 4.24 6.42 86.36 0.55 4.79 16 10 C -0.11 -4.71 5.30 30.67 0.16 -4.55 16 11 C 0.04 2.15 2.06 -11.51 -0.02 2.12 16 12 C -0.53 -28.82 8.56 25.60 0.22 -28.60 16 13 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 14 C 0.02 0.98 5.30 84.65 0.45 1.43 16 15 N -0.91 -49.67 11.31 21.45 0.24 -49.43 16 16 Si 0.95 42.62 29.54 68.60 2.03 44.65 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 20 C -0.12 -5.03 5.16 30.68 0.16 -4.87 16 21 C 0.11 3.79 6.35 86.32 0.55 4.34 16 22 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 30 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 31 H 0.11 2.25 7.70 -2.39 -0.02 2.23 16 32 H 0.11 2.16 7.95 -2.39 -0.02 2.14 16 33 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.08 2.84 7.00 -2.39 -0.02 2.82 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.26 13.58 8.31 -92.70 -0.77 12.81 16 39 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 3.93 6.03 -2.39 -0.01 3.92 16 41 H 0.10 2.72 5.97 -2.39 -0.01 2.71 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -61.45 329.78 4.79 -56.66 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.95 Total: 13.18 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 4.06 Total: -17.81 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -2.20 Total: -72.95 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -61.45 4.79 -56.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397272855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.534 kcal (2) G-P(sol) polarization free energy of solvation -61.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds