Wall clock time and date at job start Mon Mar 30 2020 00:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46821 * 2 1 4 4 C 1.53002 * 109.46821 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47351 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47497 * 180.02562 * 5 4 3 7 7 O 1.21288 * 119.99508 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00217 * 180.02562 * 6 5 4 9 9 C 1.46928 * 120.62932 * 359.97291 * 8 6 5 10 10 C 1.53187 * 108.77625 * 126.41524 * 9 8 6 11 11 C 1.53046 * 109.31363 * 54.63376 * 10 9 8 12 12 C 1.53046 * 109.53579 * 298.63645 * 11 10 9 13 13 H 1.08995 * 109.49499 * 301.40973 * 12 11 10 14 14 C 1.50700 * 109.49623 * 181.31259 * 12 11 10 15 15 H 1.07996 * 120.00534 * 240.00313 * 14 12 11 16 16 C 1.37878 * 119.99817 * 59.99951 * 14 12 11 17 17 N 1.31514 * 120.00036 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00058 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47346 * 90.00193 * 18 16 14 20 20 H 1.48507 * 109.47138 * 210.00292 * 18 16 14 21 21 H 1.48503 * 109.47135 * 329.99794 * 18 16 14 22 22 C 1.46921 * 120.63131 * 179.97438 * 8 6 5 23 23 H 1.09003 * 109.47159 * 59.99879 * 1 2 3 24 24 H 1.08994 * 109.47132 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46930 * 300.00042 * 1 2 3 26 26 H 1.08996 * 109.46786 * 240.00408 * 2 1 3 27 27 H 1.09003 * 109.47159 * 120.00121 * 2 1 3 28 28 H 1.08996 * 109.47107 * 60.00605 * 3 2 1 29 29 H 1.08997 * 109.47075 * 299.99677 * 3 2 1 30 30 H 1.09003 * 109.47401 * 60.00187 * 4 3 2 31 31 H 1.08995 * 109.47279 * 300.00440 * 4 3 2 32 32 H 1.09001 * 109.47130 * 60.00090 * 5 4 3 33 33 H 1.09003 * 109.47096 * 300.00170 * 5 4 3 34 34 H 1.09000 * 109.58351 * 246.20638 * 9 8 6 35 35 H 1.09002 * 109.58642 * 6.48295 * 9 8 6 36 36 H 1.09001 * 109.49833 * 294.68424 * 10 9 8 37 37 H 1.08996 * 109.49835 * 174.58430 * 10 9 8 38 38 H 1.08993 * 109.46296 * 178.61734 * 11 10 9 39 39 H 1.09000 * 109.45696 * 58.65290 * 11 10 9 40 40 H 0.97001 * 119.99878 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.58905 * 113.79723 * 22 8 6 42 42 H 1.09008 * 109.58585 * 353.36923 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.5870 2.8851 -0.0026 7 8 6.1934 1.8346 -0.0024 8 7 6.2609 4.0522 -0.0028 9 6 5.5403 5.3327 -0.0024 10 6 6.0493 6.1846 1.1646 11 6 7.5707 6.3195 1.0670 12 6 8.2145 4.9344 1.1631 13 1 7.9313 4.4662 2.1057 14 6 9.7140 5.0713 1.0992 15 1 10.2672 4.5874 0.3080 16 6 10.3795 5.8144 2.0510 17 7 9.7059 6.4033 3.0148 18 14 12.2380 5.9846 1.9715 19 1 12.5917 7.1733 1.1547 20 1 12.7793 6.1487 3.3447 21 1 12.8206 4.7672 1.3521 22 6 7.7300 4.0684 -0.0035 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9330 0.9289 -0.8909 31 1 3.9337 0.9285 0.8890 32 1 3.7171 3.3991 0.8887 33 1 3.7163 3.3986 -0.8913 34 1 5.7218 5.8543 -0.9421 35 1 4.4719 5.1507 0.1140 36 1 5.7864 5.7045 2.1072 37 1 5.5928 7.1733 1.1195 38 1 7.9328 6.9456 1.8823 39 1 7.8341 6.7770 0.1134 40 1 10.1742 6.9258 3.6846 41 1 8.0904 4.4868 -0.9431 42 1 8.1067 3.0523 0.1149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397597068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:40 Heat of formation + Delta-G solvation = -76.040115 kcal Electronic energy + Delta-G solvation = -19011.772626 eV Core-core repulsion = 16183.142313 eV Total energy + Delta-G solvation = -2828.630313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.62874 -36.94822 -35.88535 -33.50932 -32.22863 -31.28535 -30.18059 -27.38174 -25.07070 -24.43426 -22.34146 -21.64226 -21.04798 -19.65061 -18.15879 -16.77453 -16.13328 -16.01762 -15.19039 -14.92264 -14.55537 -13.89051 -13.62589 -13.47586 -13.24072 -13.11454 -12.76186 -12.59327 -12.25340 -11.98867 -11.79308 -11.70255 -11.07686 -11.00657 -10.97759 -10.91310 -10.81926 -10.68419 -10.55734 -10.27226 -9.95356 -9.79782 -9.45565 -9.21262 -8.81563 -8.38424 -7.86454 -6.01907 -4.08962 3.11541 3.29585 3.36425 3.40271 3.59649 4.42611 4.64389 4.81263 4.85109 5.07826 5.15742 5.23250 5.27855 5.37101 5.48203 5.57025 5.64609 5.64991 5.71331 5.79324 5.81950 5.92537 5.93225 6.10042 6.14787 6.27545 6.33986 6.39452 6.42173 6.49588 6.67644 6.82575 7.00113 7.17926 7.34174 7.69252 7.92733 8.05703 8.08198 8.38127 8.70872 8.94922 9.55900 11.03613 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.043321 B = 0.003930 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.182446 B = 7123.588817 C = 7422.693610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.104 4.104 5 C -0.139 4.139 6 C 0.506 3.494 7 O -0.554 6.554 8 N -0.605 5.605 9 C 0.109 3.891 10 C -0.135 4.135 11 C -0.113 4.113 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.514 4.514 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.116 3.884 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.035 0.965 40 H 0.260 0.740 41 H 0.053 0.947 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.941 -4.144 -5.598 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.142 4.142 5 C -0.179 4.179 6 C 0.294 3.706 7 O -0.433 6.433 8 N -0.338 5.338 9 C -0.014 4.014 10 C -0.173 4.173 11 C -0.151 4.151 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.552 4.552 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.005 4.005 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.580 -4.582 -5.443 17.128 hybrid contribution 1.001 0.392 0.051 1.076 sum -14.579 -4.189 -5.393 16.099 Atomic orbital electron populations 1.21782 0.96115 1.01396 1.01680 1.21530 0.95520 0.97091 1.02205 1.21641 0.95475 0.96737 1.01895 1.21350 0.94216 0.95112 1.03526 1.21696 0.92957 0.99500 1.03737 1.20618 0.89942 0.83592 0.76450 1.90652 1.70502 1.31082 1.51039 1.48335 1.08458 1.05276 1.71682 1.21734 0.95373 0.84755 0.99517 1.22003 1.00123 0.97998 0.97214 1.21633 0.90072 1.01407 1.01958 1.18961 0.94931 0.91242 0.92777 0.95321 1.21088 0.91322 1.31268 1.11554 0.92493 1.24941 0.98302 0.95457 0.95156 1.69873 1.35238 1.33328 1.14387 0.86575 0.85608 0.78481 0.77239 1.20693 1.21238 1.19851 1.21967 0.76177 1.02096 1.00226 0.92867 0.92965 0.92818 0.92021 0.91947 0.92014 0.92116 0.91393 0.91257 0.89262 0.89494 0.92046 0.91081 0.92401 0.92492 0.88638 0.94608 0.92987 0.92850 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.13 -1.11 5.93 -26.73 -0.16 -1.27 16 3 C -0.12 -1.12 5.21 -26.73 -0.14 -1.26 16 4 C -0.10 -1.27 4.50 -26.73 -0.12 -1.39 16 5 C -0.14 -1.78 4.05 -27.88 -0.11 -1.90 16 6 C 0.51 9.20 7.70 -10.99 -0.08 9.11 16 7 O -0.55 -12.13 15.40 5.55 0.09 -12.04 16 8 N -0.61 -11.33 2.97 -172.79 -0.51 -11.84 16 9 C 0.11 1.68 6.34 -3.71 -0.02 1.66 16 10 C -0.14 -2.39 6.08 -26.61 -0.16 -2.55 16 11 C -0.11 -2.53 4.96 -26.68 -0.13 -2.67 16 12 C 0.04 0.99 2.25 -91.67 -0.21 0.79 16 13 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.51 -14.04 8.56 -34.44 -0.29 -14.33 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -25.08 11.31 55.43 0.63 -24.45 16 18 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.12 2.57 5.65 -3.73 -0.02 2.55 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.09 1.03 7.69 -51.93 -0.40 0.63 16 33 H 0.09 0.93 7.94 -51.93 -0.41 0.52 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.86 5.93 -51.93 -0.31 0.55 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 2.43 6.04 -51.93 -0.31 2.12 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.86 7.01 -51.92 -0.36 1.50 16 LS Contribution 329.71 15.07 4.97 4.97 Total: -1.00 -30.00 329.71 -8.71 -38.72 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.68 Total: -1.13 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -1.18 Total: -10.41 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.11 Total: -36.30 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.00 -8.71 -38.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397597068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.325 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds