Wall clock time and date at job start Mon Mar 30 2020 00:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46821 * 2 1 4 4 C 1.53002 * 109.46821 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47351 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47497 * 180.02562 * 5 4 3 7 7 O 1.21288 * 119.99508 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00217 * 180.02562 * 6 5 4 9 9 C 1.46928 * 120.62932 * 359.97291 * 8 6 5 10 10 C 1.53187 * 108.77625 * 126.41524 * 9 8 6 11 11 C 1.53046 * 109.31363 * 54.63376 * 10 9 8 12 12 C 1.53046 * 109.53579 * 298.63645 * 11 10 9 13 13 H 1.08995 * 109.49499 * 301.40973 * 12 11 10 14 14 C 1.50700 * 109.49623 * 181.31259 * 12 11 10 15 15 H 1.07996 * 120.00534 * 240.00313 * 14 12 11 16 16 C 1.37878 * 119.99817 * 59.99951 * 14 12 11 17 17 N 1.31514 * 120.00036 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00058 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47346 * 90.00193 * 18 16 14 20 20 H 1.48507 * 109.47138 * 210.00292 * 18 16 14 21 21 H 1.48503 * 109.47135 * 329.99794 * 18 16 14 22 22 C 1.46921 * 120.63131 * 179.97438 * 8 6 5 23 23 H 1.09003 * 109.47159 * 59.99879 * 1 2 3 24 24 H 1.08994 * 109.47132 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46930 * 300.00042 * 1 2 3 26 26 H 1.08996 * 109.46786 * 240.00408 * 2 1 3 27 27 H 1.09003 * 109.47159 * 120.00121 * 2 1 3 28 28 H 1.08996 * 109.47107 * 60.00605 * 3 2 1 29 29 H 1.08997 * 109.47075 * 299.99677 * 3 2 1 30 30 H 1.09003 * 109.47401 * 60.00187 * 4 3 2 31 31 H 1.08995 * 109.47279 * 300.00440 * 4 3 2 32 32 H 1.09001 * 109.47130 * 60.00090 * 5 4 3 33 33 H 1.09003 * 109.47096 * 300.00170 * 5 4 3 34 34 H 1.09000 * 109.58351 * 246.20638 * 9 8 6 35 35 H 1.09002 * 109.58642 * 6.48295 * 9 8 6 36 36 H 1.09001 * 109.49833 * 294.68424 * 10 9 8 37 37 H 1.08996 * 109.49835 * 174.58430 * 10 9 8 38 38 H 1.08993 * 109.46296 * 178.61734 * 11 10 9 39 39 H 1.09000 * 109.45696 * 58.65290 * 11 10 9 40 40 H 0.97001 * 119.99878 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.58905 * 113.79723 * 22 8 6 42 42 H 1.09008 * 109.58585 * 353.36923 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.5870 2.8851 -0.0026 7 8 6.1934 1.8346 -0.0024 8 7 6.2609 4.0522 -0.0028 9 6 5.5403 5.3327 -0.0024 10 6 6.0493 6.1846 1.1646 11 6 7.5707 6.3195 1.0670 12 6 8.2145 4.9344 1.1631 13 1 7.9313 4.4662 2.1057 14 6 9.7140 5.0713 1.0992 15 1 10.2672 4.5874 0.3080 16 6 10.3795 5.8144 2.0510 17 7 9.7059 6.4033 3.0148 18 14 12.2380 5.9846 1.9715 19 1 12.5917 7.1733 1.1547 20 1 12.7793 6.1487 3.3447 21 1 12.8206 4.7672 1.3521 22 6 7.7300 4.0684 -0.0035 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9330 0.9289 -0.8909 31 1 3.9337 0.9285 0.8890 32 1 3.7171 3.3991 0.8887 33 1 3.7163 3.3986 -0.8913 34 1 5.7218 5.8543 -0.9421 35 1 4.4719 5.1507 0.1140 36 1 5.7864 5.7045 2.1072 37 1 5.5928 7.1733 1.1195 38 1 7.9328 6.9456 1.8823 39 1 7.8341 6.7770 0.1134 40 1 10.1742 6.9258 3.6846 41 1 8.0904 4.4868 -0.9431 42 1 8.1067 3.0523 0.1149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397597068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:39 Heat of formation + Delta-G solvation = -92.531409 kcal Electronic energy + Delta-G solvation = -19012.487742 eV Core-core repulsion = 16183.142313 eV Total energy + Delta-G solvation = -2829.345429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.10090 -38.49525 -36.79410 -35.37513 -33.36906 -32.84718 -31.85481 -28.43238 -26.94112 -25.87130 -23.52907 -23.12234 -21.83615 -21.27434 -19.65715 -18.53147 -17.81076 -17.02505 -16.73654 -16.49912 -15.95451 -15.12543 -15.01362 -14.81097 -14.48402 -14.40863 -14.10488 -13.88103 -13.67232 -13.58010 -12.88372 -12.79112 -12.75516 -12.62233 -12.49210 -11.96060 -11.86268 -11.85803 -11.79015 -11.62717 -11.55223 -11.33812 -11.26277 -10.86820 -10.63541 -10.42797 -9.46668 -8.12166 -6.27602 1.39443 1.40623 1.50850 1.71027 2.17195 2.43068 3.14012 3.60948 3.89325 4.05195 4.10754 4.26752 4.28373 4.34612 4.39422 4.47737 4.55522 4.59002 4.71899 4.76735 4.84533 4.87332 4.90641 4.97465 4.99039 5.09342 5.13099 5.14901 5.26702 5.29942 5.40113 5.48543 5.48995 5.55774 5.59247 5.60397 5.92369 6.13259 6.33647 6.61746 6.82058 7.27722 7.40580 8.91437 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.043321 B = 0.003930 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.182446 B = 7123.588817 C = 7422.693610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.111 4.111 4 C -0.102 4.102 5 C -0.128 4.128 6 C 0.496 3.504 7 O -0.602 6.602 8 N -0.611 5.611 9 C 0.109 3.891 10 C -0.128 4.128 11 C -0.107 4.107 12 C 0.041 3.959 13 H -0.016 1.016 14 C -0.540 4.540 15 H 0.051 0.949 16 C 0.016 3.984 17 N -0.913 5.913 18 Si 0.956 3.044 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.273 1.273 22 C 0.129 3.871 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.044 0.956 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.037 0.963 40 H 0.262 0.738 41 H 0.059 0.941 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.111 -3.043 -6.682 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.149 4.149 4 C -0.140 4.140 5 C -0.167 4.167 6 C 0.287 3.713 7 O -0.484 6.484 8 N -0.342 5.342 9 C -0.012 4.012 10 C -0.166 4.166 11 C -0.145 4.145 12 C 0.022 3.978 13 H 0.002 0.998 14 C -0.578 4.578 15 H 0.069 0.931 16 C -0.183 4.183 17 N -0.552 5.552 18 Si 0.781 3.219 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.198 1.198 22 C 0.006 3.994 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.130 0.870 33 H 0.141 0.859 34 H 0.099 0.901 35 H 0.136 0.864 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.781 -3.461 -6.533 19.256 hybrid contribution 1.702 0.013 0.415 1.752 sum -16.078 -3.448 -6.118 17.545 Atomic orbital electron populations 1.21757 0.94822 1.01890 1.02232 1.21551 0.96644 0.96869 1.01645 1.21585 0.92875 0.97227 1.03173 1.21319 0.96386 0.94533 1.01738 1.21765 0.88127 1.00434 1.06361 1.21704 0.92268 0.82488 0.74878 1.90631 1.71983 1.32816 1.52964 1.48443 1.06973 1.07168 1.71634 1.22008 0.97370 0.82650 0.99185 1.21917 0.96410 1.00428 0.97868 1.21434 0.93738 0.98794 1.00546 1.18861 0.94213 0.92992 0.91704 0.99754 1.21452 0.93067 1.31529 1.11777 0.93112 1.25700 1.02684 0.95092 0.94795 1.70008 1.36800 1.33609 1.14791 0.85593 0.80299 0.78619 0.77374 1.19541 1.20830 1.19774 1.21502 0.79135 0.99641 0.99129 0.92119 0.92611 0.92408 0.92437 0.92840 0.90983 0.90424 0.92863 0.93622 0.86985 0.85942 0.90081 0.86355 0.93719 0.89089 0.91974 0.94449 0.92896 0.92263 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.18 16 2 C -0.13 -2.07 5.93 30.60 0.18 -1.89 16 3 C -0.11 -1.76 5.21 30.60 0.16 -1.60 16 4 C -0.10 -2.32 4.50 30.60 0.14 -2.18 16 5 C -0.13 -2.86 4.05 29.85 0.12 -2.74 16 6 C 0.50 17.59 7.70 87.66 0.67 18.26 16 7 O -0.60 -27.08 15.40 -3.06 -0.05 -27.13 16 8 N -0.61 -22.20 2.97 -818.99 -2.43 -24.64 16 9 C 0.11 2.97 6.34 86.36 0.55 3.52 16 10 C -0.13 -4.26 6.08 30.67 0.19 -4.08 16 11 C -0.11 -4.84 4.96 30.63 0.15 -4.68 16 12 C 0.04 2.14 2.25 -11.47 -0.03 2.11 16 13 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 14 C -0.54 -30.52 8.56 25.60 0.22 -30.30 16 15 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 16 C 0.02 0.92 5.30 84.65 0.45 1.37 16 17 N -0.91 -52.78 11.31 21.45 0.24 -52.54 16 18 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 C 0.13 5.83 5.65 86.35 0.49 6.32 16 23 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 31 H 0.04 1.24 8.10 -2.39 -0.02 1.22 16 32 H 0.11 2.08 7.69 -2.39 -0.02 2.07 16 33 H 0.12 1.96 7.94 -2.39 -0.02 1.94 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.12 2.16 5.93 -2.39 -0.01 2.15 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.06 3.23 6.04 -2.39 -0.01 3.22 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 41 H 0.06 2.57 8.14 -2.39 -0.02 2.56 16 42 H 0.05 2.44 7.01 -2.38 -0.02 2.43 16 Total: -1.00 -69.32 329.71 4.75 -64.58 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.95 Total: 10.63 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 4.00 Total: -17.08 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -2.19 Total: -77.17 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.05 Total: -27.13 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -69.32 4.75 -64.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397597068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.953 kcal (2) G-P(sol) polarization free energy of solvation -69.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds