Wall clock time and date at job start Sun Mar 29 2020 23:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86791 * 120.00140 * 2 1 4 4 H 1.48499 * 109.47364 * 269.99575 * 3 2 1 5 5 H 1.48501 * 109.47142 * 30.00008 * 3 2 1 6 6 H 1.48509 * 109.47012 * 149.99891 * 3 2 1 7 7 C 1.37873 * 119.99439 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00699 * 359.97438 * 7 2 1 10 10 C 1.53114 * 109.52732 * 180.02562 * 9 7 2 11 11 C 1.53037 * 109.31211 * 177.54197 * 10 9 7 12 12 N 1.46854 * 109.52285 * 300.88400 * 11 10 9 13 13 C 1.46895 * 110.99648 * 185.80147 * 12 11 10 14 14 C 1.52996 * 109.47373 * 65.74825 * 13 12 11 15 15 C 1.53000 * 109.47631 * 180.02562 * 14 13 12 16 16 H 1.09001 * 110.74885 * 57.01401 * 15 14 13 17 17 C 1.55299 * 110.85195 * 180.71460 * 15 14 13 18 18 C 1.54944 * 100.94612 * 152.32390 * 17 15 14 19 19 O 1.43646 * 105.13279 * 323.55421 * 18 17 15 20 20 C 1.43236 * 109.97451 * 24.42598 * 19 18 17 21 21 C 1.46840 * 111.23238 * 61.67711 * 12 11 10 22 22 C 1.53035 * 109.52994 * 298.28004 * 21 12 11 23 23 H 0.97003 * 119.99724 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.57110 * 59.83647 * 9 7 2 25 25 H 1.09002 * 109.50377 * 297.50321 * 10 9 7 26 26 H 1.09003 * 109.50316 * 57.58317 * 10 9 7 27 27 H 1.09000 * 109.46159 * 60.85546 * 11 10 9 28 28 H 1.09000 * 109.46461 * 180.82902 * 11 10 9 29 29 H 1.09006 * 109.47095 * 185.74417 * 13 12 11 30 30 H 1.08994 * 109.47117 * 305.74495 * 13 12 11 31 31 H 1.09008 * 109.47411 * 299.99935 * 14 13 12 32 32 H 1.09003 * 109.47446 * 59.99598 * 14 13 12 33 33 H 1.09004 * 111.12344 * 270.24204 * 17 15 14 34 34 H 1.08995 * 111.12613 * 34.40047 * 17 15 14 35 35 H 1.08995 * 110.31197 * 204.63945 * 18 17 15 36 36 H 1.09003 * 110.39397 * 82.50927 * 18 17 15 37 37 H 1.08996 * 109.83443 * 238.77804 * 20 19 18 38 38 H 1.09007 * 109.90540 * 117.84239 * 20 19 18 39 39 H 1.09001 * 109.46294 * 178.26219 * 21 12 11 40 40 H 1.09005 * 109.46534 * 58.30014 * 21 12 11 41 41 H 1.09005 * 109.50290 * 299.24575 * 22 21 12 42 42 H 1.08998 * 109.54151 * 179.13613 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2449 -3.6639 -0.0005 11 6 1.4758 -4.9855 0.0614 12 7 0.6541 -5.0186 1.2781 13 6 0.0079 -6.3276 1.4414 14 6 1.0750 -7.3963 1.6860 15 6 0.4020 -8.7599 1.8554 16 1 -0.2057 -9.0016 0.9834 17 6 1.4570 -9.8675 2.1237 18 6 0.6174 -10.8818 2.9404 19 8 -0.2538 -10.0792 3.7529 20 6 -0.4471 -8.7971 3.1443 21 6 -0.3395 -3.9374 1.2783 22 6 0.3761 -2.5850 1.2532 23 1 -0.4850 0.8401 -0.0004 24 1 0.6212 -2.5572 -0.8883 25 1 2.8421 -3.6328 -0.9119 26 1 2.9001 -3.5832 0.8668 27 1 0.8316 -5.0722 -0.8136 28 1 2.1815 -5.8161 0.0764 29 1 -0.6732 -6.2931 2.2918 30 1 -0.5509 -6.5722 0.5381 31 1 1.7562 -7.4310 0.8356 32 1 1.6339 -7.1518 2.5893 33 1 1.8086 -10.3093 1.1912 34 1 2.2897 -9.4826 2.7123 35 1 1.2668 -11.4908 3.5694 36 1 0.0343 -11.5166 2.2733 37 1 -0.1201 -8.0114 3.8253 38 1 -1.4998 -8.6582 2.8977 39 1 -0.9522 -4.0075 2.1771 40 1 -0.9754 -4.0283 0.3977 41 1 1.0016 -2.4877 2.1406 42 1 -0.3614 -1.7825 1.2379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400914548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:30 Heat of formation + Delta-G solvation = -65.382196 kcal Electronic energy + Delta-G solvation = -19131.120524 eV Core-core repulsion = 16302.952373 eV Total energy + Delta-G solvation = -2828.168151 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.70089 -38.22993 -34.92100 -33.20584 -31.37509 -30.15333 -29.67874 -27.52742 -25.41978 -23.44244 -22.34454 -21.93035 -21.04158 -20.16428 -18.56142 -16.95112 -16.44339 -16.11026 -15.19216 -14.86144 -14.62207 -14.39474 -13.93189 -13.69322 -13.28717 -13.11758 -12.56838 -12.51641 -12.44431 -11.85844 -11.62104 -11.46089 -11.29437 -11.24823 -10.92076 -10.87293 -10.61136 -10.50510 -10.34533 -10.17726 -9.91758 -9.68291 -9.41823 -8.91171 -8.69104 -8.27418 -7.73489 -5.95542 -4.00785 3.32323 3.39085 3.42740 3.70922 4.22502 4.33892 4.46751 4.68741 4.75634 5.00398 5.05278 5.18879 5.28898 5.34581 5.47703 5.51226 5.58343 5.66339 5.69635 5.77089 5.79713 5.90204 5.96543 6.11628 6.13264 6.20380 6.31807 6.38849 6.61876 6.64985 6.81770 6.87707 7.10216 7.18857 7.46161 7.64126 7.72277 7.85526 8.07111 8.18054 8.50472 9.02935 9.63514 11.10656 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.058691 B = 0.003683 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.963190 B = 7601.285910 C = 7826.441559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.107 4.107 11 C 0.058 3.942 12 N -0.536 5.536 13 C 0.053 3.947 14 C -0.105 4.105 15 C -0.121 4.121 16 H 0.082 0.918 17 C -0.152 4.152 18 C 0.051 3.949 19 O -0.389 6.389 20 C 0.053 3.947 21 C 0.058 3.942 22 C -0.104 4.104 23 H 0.259 0.741 24 H 0.020 0.980 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.022 0.978 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.025 0.975 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.021 0.979 41 H 0.043 0.957 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.102 -17.873 3.205 18.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.070 4.070 12 N -0.261 5.261 13 C -0.075 4.075 14 C -0.143 4.143 15 C -0.140 4.140 16 H 0.101 0.899 17 C -0.190 4.190 18 C -0.026 4.026 19 O -0.308 6.308 20 C -0.023 4.023 21 C -0.069 4.069 22 C -0.142 4.142 23 H 0.069 0.931 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.062 0.938 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.161 -17.718 3.797 18.121 hybrid contribution -0.079 0.865 -0.988 1.316 sum 0.082 -16.852 2.809 17.085 Atomic orbital electron populations 1.69884 1.05866 1.26271 1.51160 1.24975 0.94848 0.99015 0.95238 0.86629 0.79930 0.83650 0.77985 1.20831 1.21299 1.19946 1.21218 0.92879 0.90694 1.50017 0.92772 1.18682 0.92710 0.91751 0.93946 1.21677 0.98724 0.93838 1.00206 1.22166 0.95923 0.99216 0.89649 1.61981 1.23821 1.01969 1.38328 1.22100 0.95710 0.89851 0.99882 1.21580 0.98165 0.91501 1.03025 1.22747 0.96748 0.96122 0.98385 0.89920 1.23320 0.98621 0.96000 1.01018 1.23348 0.91743 0.93794 0.93702 1.88387 1.68361 1.26213 1.47848 1.23281 0.99463 0.85675 0.93876 1.22262 0.93014 0.93089 0.98568 1.21663 1.00194 0.92994 0.99398 0.93127 0.96229 0.93306 0.92519 0.96010 0.92279 0.91326 0.95632 0.91351 0.90715 0.90001 0.90051 0.89958 0.92417 0.90698 0.91559 0.92704 0.96058 0.93821 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 11.37 55.43 0.63 -24.92 16 2 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.10 8.56 -34.44 -0.29 -14.40 16 8 H 0.05 1.48 7.75 -52.48 -0.41 1.08 16 9 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 10 C -0.11 -2.25 5.32 -26.65 -0.14 -2.39 16 11 C 0.06 1.04 5.29 -3.83 -0.02 1.02 16 12 N -0.54 -9.47 4.66 -234.68 -1.09 -10.56 16 13 C 0.05 0.74 4.81 -3.83 -0.02 0.72 16 14 C -0.10 -1.21 4.53 -26.73 -0.12 -1.34 16 15 C -0.12 -1.18 3.03 -88.67 -0.27 -1.45 16 16 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 17 C -0.15 -1.29 6.62 -24.49 -0.16 -1.45 16 18 C 0.05 0.45 7.78 38.18 0.30 0.75 16 19 O -0.39 -4.64 11.36 -35.23 -0.40 -5.04 16 20 C 0.05 0.57 6.57 37.89 0.25 0.82 16 21 C 0.06 1.14 5.46 -3.84 -0.02 1.12 16 22 C -0.10 -2.48 5.12 -26.65 -0.14 -2.62 16 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.92 6.21 -51.93 -0.32 0.60 16 29 H 0.07 0.91 7.32 -51.93 -0.38 0.53 16 30 H 0.03 0.36 8.12 -51.93 -0.42 -0.07 16 31 H 0.07 0.80 6.43 -51.92 -0.33 0.47 16 32 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.70 8.04 -51.93 -0.42 0.28 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.83 7.73 -51.93 -0.40 0.43 16 38 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.05 1.00 8.02 -51.93 -0.42 0.58 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 LS Contribution 320.53 15.07 4.83 4.83 Total: -1.00 -28.91 320.53 -9.61 -38.52 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -7.62 Total: -2.56 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -0.93 Total: -16.64 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: -0.46 Total: -35.48 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.40 Total: -5.04 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.91 -9.61 -38.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400914548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.862 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds