Wall clock time and date at job start Sun Mar 29 2020 23:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86791 * 120.00140 * 2 1 4 4 H 1.48499 * 109.47364 * 269.99575 * 3 2 1 5 5 H 1.48501 * 109.47142 * 30.00008 * 3 2 1 6 6 H 1.48509 * 109.47012 * 149.99891 * 3 2 1 7 7 C 1.37873 * 119.99439 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00699 * 359.97438 * 7 2 1 10 10 C 1.53114 * 109.52732 * 180.02562 * 9 7 2 11 11 C 1.53037 * 109.31211 * 177.54197 * 10 9 7 12 12 N 1.46854 * 109.52285 * 300.88400 * 11 10 9 13 13 C 1.46895 * 110.99648 * 185.80147 * 12 11 10 14 14 C 1.52996 * 109.47373 * 65.74825 * 13 12 11 15 15 C 1.53000 * 109.47631 * 180.02562 * 14 13 12 16 16 H 1.09001 * 110.74885 * 57.01401 * 15 14 13 17 17 C 1.55299 * 110.85195 * 180.71460 * 15 14 13 18 18 C 1.54944 * 100.94612 * 152.32390 * 17 15 14 19 19 O 1.43646 * 105.13279 * 323.55421 * 18 17 15 20 20 C 1.43236 * 109.97451 * 24.42598 * 19 18 17 21 21 C 1.46840 * 111.23238 * 61.67711 * 12 11 10 22 22 C 1.53035 * 109.52994 * 298.28004 * 21 12 11 23 23 H 0.97003 * 119.99724 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.57110 * 59.83647 * 9 7 2 25 25 H 1.09002 * 109.50377 * 297.50321 * 10 9 7 26 26 H 1.09003 * 109.50316 * 57.58317 * 10 9 7 27 27 H 1.09000 * 109.46159 * 60.85546 * 11 10 9 28 28 H 1.09000 * 109.46461 * 180.82902 * 11 10 9 29 29 H 1.09006 * 109.47095 * 185.74417 * 13 12 11 30 30 H 1.08994 * 109.47117 * 305.74495 * 13 12 11 31 31 H 1.09008 * 109.47411 * 299.99935 * 14 13 12 32 32 H 1.09003 * 109.47446 * 59.99598 * 14 13 12 33 33 H 1.09004 * 111.12344 * 270.24204 * 17 15 14 34 34 H 1.08995 * 111.12613 * 34.40047 * 17 15 14 35 35 H 1.08995 * 110.31197 * 204.63945 * 18 17 15 36 36 H 1.09003 * 110.39397 * 82.50927 * 18 17 15 37 37 H 1.08996 * 109.83443 * 238.77804 * 20 19 18 38 38 H 1.09007 * 109.90540 * 117.84239 * 20 19 18 39 39 H 1.09001 * 109.46294 * 178.26219 * 21 12 11 40 40 H 1.09005 * 109.46534 * 58.30014 * 21 12 11 41 41 H 1.09005 * 109.50290 * 299.24575 * 22 21 12 42 42 H 1.08998 * 109.54151 * 179.13613 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2449 -3.6639 -0.0005 11 6 1.4758 -4.9855 0.0614 12 7 0.6541 -5.0186 1.2781 13 6 0.0079 -6.3276 1.4414 14 6 1.0750 -7.3963 1.6860 15 6 0.4020 -8.7599 1.8554 16 1 -0.2057 -9.0016 0.9834 17 6 1.4570 -9.8675 2.1237 18 6 0.6174 -10.8818 2.9404 19 8 -0.2538 -10.0792 3.7529 20 6 -0.4471 -8.7971 3.1443 21 6 -0.3395 -3.9374 1.2783 22 6 0.3761 -2.5850 1.2532 23 1 -0.4850 0.8401 -0.0004 24 1 0.6212 -2.5572 -0.8883 25 1 2.8421 -3.6328 -0.9119 26 1 2.9001 -3.5832 0.8668 27 1 0.8316 -5.0722 -0.8136 28 1 2.1815 -5.8161 0.0764 29 1 -0.6732 -6.2931 2.2918 30 1 -0.5509 -6.5722 0.5381 31 1 1.7562 -7.4310 0.8356 32 1 1.6339 -7.1518 2.5893 33 1 1.8086 -10.3093 1.1912 34 1 2.2897 -9.4826 2.7123 35 1 1.2668 -11.4908 3.5694 36 1 0.0343 -11.5166 2.2733 37 1 -0.1201 -8.0114 3.8253 38 1 -1.4998 -8.6582 2.8977 39 1 -0.9522 -4.0075 2.1771 40 1 -0.9754 -4.0283 0.3977 41 1 1.0016 -2.4877 2.1406 42 1 -0.3614 -1.7825 1.2379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400914548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:29 Heat of formation + Delta-G solvation = -82.847319 kcal Electronic energy + Delta-G solvation = -19131.877869 eV Core-core repulsion = 16302.952373 eV Total energy + Delta-G solvation = -2828.925495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55479 -39.69016 -36.34733 -34.67902 -32.99307 -31.55253 -30.87292 -28.76797 -27.08287 -24.75341 -23.63346 -23.30977 -22.25775 -21.10543 -20.33872 -18.45309 -17.70900 -17.15072 -16.68204 -16.17899 -15.92362 -15.66520 -15.19366 -14.94543 -14.69736 -14.31127 -14.13370 -14.01839 -13.82364 -13.00725 -12.98139 -12.80338 -12.74163 -12.57924 -12.29696 -12.24566 -12.04288 -11.90308 -11.64156 -11.59945 -11.40133 -11.34688 -10.73167 -10.64644 -10.46024 -10.36490 -9.16388 -8.07828 -6.21272 1.40926 1.41891 1.52221 2.44001 2.93849 3.07141 3.19055 3.52910 3.84495 3.96891 4.15728 4.20978 4.25671 4.32553 4.36764 4.40051 4.48591 4.59257 4.66711 4.72682 4.78475 4.85076 4.87125 4.90413 4.94992 4.97193 5.01347 5.09700 5.14340 5.24522 5.25987 5.36630 5.42973 5.57171 5.63473 6.00840 6.03861 6.07799 6.31328 6.37239 6.41382 6.90536 7.46519 8.96713 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.058691 B = 0.003683 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.963190 B = 7601.285910 C = 7826.441559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.043 3.957 10 C -0.101 4.101 11 C 0.065 3.935 12 N -0.543 5.543 13 C 0.053 3.947 14 C -0.095 4.095 15 C -0.114 4.114 16 H 0.091 0.909 17 C -0.147 4.147 18 C 0.044 3.956 19 O -0.413 6.413 20 C 0.050 3.950 21 C 0.069 3.931 22 C -0.096 4.096 23 H 0.260 0.740 24 H -0.013 1.013 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.018 0.982 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.013 0.987 41 H 0.030 0.970 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 -19.401 3.221 19.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.025 3.975 10 C -0.138 4.138 11 C -0.063 4.063 12 N -0.268 5.268 13 C -0.074 4.074 14 C -0.133 4.133 15 C -0.134 4.134 16 H 0.110 0.890 17 C -0.184 4.184 18 C -0.032 4.032 19 O -0.334 6.334 20 C -0.026 4.026 21 C -0.059 4.059 22 C -0.134 4.134 23 H 0.069 0.931 24 H 0.005 0.995 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.036 0.964 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.032 0.968 41 H 0.049 0.951 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.948 -19.266 3.813 19.663 hybrid contribution -0.334 1.320 -0.988 1.682 sum 0.614 -17.946 2.825 18.177 Atomic orbital electron populations 1.70024 1.07153 1.27029 1.51595 1.25757 0.95705 1.02394 0.94888 0.85623 0.78779 0.79484 0.78170 1.20193 1.20896 1.19320 1.21602 0.93004 0.92300 1.50246 0.93101 1.18665 0.93195 0.92695 0.92970 1.21550 0.97991 0.94163 1.00134 1.22093 0.96207 0.98260 0.89699 1.61937 1.23585 1.03162 1.38105 1.22201 0.96534 0.88272 1.00413 1.21474 0.97411 0.91567 1.02816 1.22678 0.97029 0.95450 0.98194 0.89049 1.23311 0.98023 0.95304 1.01774 1.23550 0.91812 0.93826 0.93979 1.88361 1.69139 1.26823 1.49035 1.23307 0.99877 0.85280 0.94133 1.22023 0.92998 0.91847 0.99051 1.21423 0.99168 0.94701 0.98108 0.93112 0.99514 0.92906 0.93061 0.96375 0.89035 0.90641 0.95093 0.90923 0.91358 0.88168 0.90230 0.88805 0.91320 0.91465 0.91261 0.90997 0.96848 0.95117 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.84 11.37 21.45 0.24 -53.59 16 2 C 0.01 0.61 5.31 84.65 0.45 1.06 16 3 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.53 -30.09 8.56 25.60 0.22 -29.87 16 8 H 0.05 2.82 7.75 -2.91 -0.02 2.80 16 9 C 0.04 2.22 2.16 -11.46 -0.02 2.20 16 10 C -0.10 -4.21 5.32 30.64 0.16 -4.05 16 11 C 0.07 2.22 5.29 86.32 0.46 2.68 16 12 N -0.54 -18.35 4.66 -896.38 -4.17 -22.52 16 13 C 0.05 1.36 4.81 86.30 0.41 1.77 16 14 C -0.09 -1.93 4.53 30.59 0.14 -1.80 16 15 C -0.11 -1.92 3.03 -9.53 -0.03 -1.95 16 16 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 17 C -0.15 -2.05 6.62 32.05 0.21 -1.84 16 18 C 0.04 0.68 7.78 72.65 0.56 1.24 16 19 O -0.41 -9.21 11.36 -148.98 -1.69 -10.90 16 20 C 0.05 0.99 6.57 72.45 0.48 1.47 16 21 C 0.07 2.69 5.46 86.33 0.47 3.16 16 22 C -0.10 -4.66 5.12 30.65 0.16 -4.50 16 23 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 24 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 25 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.09 2.57 6.21 -2.39 -0.01 2.55 16 29 H 0.08 1.83 7.32 -2.38 -0.02 1.82 16 30 H 0.03 0.78 8.12 -2.39 -0.02 0.76 16 31 H 0.07 1.44 6.43 -2.38 -0.02 1.42 16 32 H 0.07 1.51 8.07 -2.39 -0.02 1.49 16 33 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.08 1.16 8.04 -2.39 -0.02 1.14 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 1.40 7.73 -2.39 -0.02 1.38 16 38 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.07 2.55 8.02 -2.39 -0.02 2.53 16 40 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.06 3.31 6.17 -2.39 -0.01 3.29 16 Total: -1.00 -62.77 320.53 1.03 -61.74 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.96 Total: 9.41 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: 3.67 Total: -30.43 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -3.93 Total: -76.11 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -1.69 Total: -10.90 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -62.77 1.03 -61.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400914548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.107 kcal (2) G-P(sol) polarization free energy of solvation -62.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds