Wall clock time and date at job start Sun Mar 29 2020 23:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00529 * 2 1 4 4 H 1.48491 * 109.47326 * 240.00463 * 3 2 1 5 5 H 1.48505 * 109.46886 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47351 * 119.99859 * 3 2 1 7 7 C 1.37888 * 119.99523 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99508 * 167.02597 * 7 2 1 9 9 C 1.50697 * 120.00151 * 347.01909 * 7 2 1 10 10 C 1.53001 * 115.55019 * 324.63561 * 9 7 2 11 11 N 1.46892 * 109.47129 * 291.33138 * 10 9 7 12 12 C 1.46849 * 111.00265 * 51.66834 * 11 10 9 13 13 C 1.53030 * 109.52458 * 185.83869 * 12 11 10 14 14 C 1.53122 * 109.27702 * 300.81934 * 13 12 11 15 15 C 1.53005 * 109.52204 * 177.56250 * 14 13 12 16 16 C 1.52996 * 109.47358 * 65.31761 * 15 14 13 17 17 O 1.42895 * 109.47179 * 180.02562 * 16 15 14 18 18 C 1.53117 * 109.16083 * 57.65777 * 14 13 12 19 19 C 1.46856 * 110.99848 * 175.87806 * 11 10 9 20 20 C 1.53001 * 117.49666 * 110.30363 * 9 7 2 21 21 C 1.53001 * 117.50026 * 178.96450 * 9 7 2 22 22 H 0.97001 * 119.99515 * 5.01340 * 1 2 3 23 23 H 1.09000 * 109.47085 * 51.33351 * 10 9 7 24 24 H 1.09006 * 109.46865 * 171.33014 * 10 9 7 25 25 H 1.08997 * 109.46013 * 305.85468 * 12 11 10 26 26 H 1.09005 * 109.46017 * 65.81846 * 12 11 10 27 27 H 1.09000 * 109.50496 * 180.87908 * 13 12 11 28 28 H 1.09002 * 109.50548 * 60.75705 * 13 12 11 29 29 H 1.09000 * 109.52559 * 297.74481 * 14 13 12 30 30 H 1.08997 * 109.47031 * 185.31691 * 15 14 13 31 31 H 1.09007 * 109.46783 * 305.31584 * 15 14 13 32 32 H 1.09006 * 109.46853 * 300.00097 * 16 15 14 33 33 H 1.08996 * 109.47442 * 59.99746 * 16 15 14 34 34 H 0.96698 * 114.00345 * 179.97438 * 17 16 15 35 35 H 1.09007 * 109.50069 * 182.40613 * 18 14 13 36 36 H 1.09000 * 109.50453 * 62.28469 * 18 14 13 37 37 H 1.09006 * 109.46152 * 294.17681 * 19 11 10 38 38 H 1.08994 * 109.46251 * 54.14380 * 19 11 10 39 39 H 1.08998 * 117.50105 * 215.00083 * 20 9 7 40 40 H 1.09000 * 117.49730 * 0.02811 * 20 9 7 41 41 H 1.09002 * 117.49414 * 359.97438 * 21 9 7 42 42 H 1.08996 * 117.49748 * 144.97687 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0639 -1.2060 -0.2105 9 6 1.2798 -2.4827 0.2920 10 6 0.1556 -2.3875 1.3254 11 7 0.7303 -2.1251 2.6515 12 6 1.6429 -0.9753 2.6114 13 6 2.3316 -0.8214 3.9693 14 6 1.2704 -0.6168 5.0540 15 6 1.9492 -0.5230 6.4221 16 6 2.8188 0.7347 6.4748 17 8 3.4531 0.8219 7.7523 18 6 0.3045 -1.8048 5.0425 19 6 -0.3256 -1.9302 3.6535 20 6 1.0951 -3.4675 -0.8642 21 6 2.0954 -3.7766 0.2526 22 1 -0.4849 0.8369 -0.0734 23 1 -0.5191 -1.5754 1.0545 24 1 -0.3973 -3.3267 1.3484 25 1 2.3950 -1.1354 1.8388 26 1 1.0779 -0.0708 2.3861 27 1 2.9972 0.0414 3.9441 28 1 2.9080 -1.7201 4.1890 29 1 0.7196 0.3026 4.8560 30 1 1.1894 -0.4723 7.2019 31 1 2.5730 -1.4030 6.5792 32 1 3.5786 0.6839 5.6949 33 1 2.1950 1.6146 6.3176 34 1 4.0219 1.5969 7.8569 35 1 -0.4783 -1.6445 5.7839 36 1 0.8490 -2.7189 5.2790 37 1 -0.8814 -1.0212 3.4233 38 1 -1.0031 -2.7838 3.6377 39 1 0.1727 -4.0477 -0.8887 40 1 1.4982 -3.1836 -1.8363 41 1 3.1560 -3.6959 0.0146 42 1 1.8312 -4.5599 0.9630 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400990525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:56 Heat of formation + Delta-G solvation = -28.771800 kcal Electronic energy + Delta-G solvation = -20170.057748 eV Core-core repulsion = 17343.477143 eV Total energy + Delta-G solvation = -2826.580605 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.80894 -37.17488 -36.12019 -33.46187 -32.35451 -30.04478 -29.22017 -25.90570 -25.28081 -23.01020 -21.99621 -21.02878 -20.49259 -19.11688 -18.81235 -17.31489 -16.22277 -15.29283 -14.89135 -14.69751 -14.12820 -14.00751 -13.85421 -13.58249 -12.98826 -12.82791 -12.60128 -12.07106 -11.71642 -11.49358 -11.38832 -11.16114 -10.98848 -10.85297 -10.68617 -10.45930 -10.36907 -10.20904 -10.01656 -9.95814 -9.58111 -9.53049 -9.19304 -8.85933 -8.60506 -8.17731 -7.03876 -6.03052 -4.05305 3.20047 3.26257 3.29482 4.22436 4.27366 4.85910 5.01091 5.08648 5.13815 5.37523 5.48852 5.55527 5.61800 5.67685 5.92728 5.96803 6.10608 6.11561 6.20232 6.23429 6.34628 6.43396 6.50133 6.51108 6.57133 6.62341 6.75722 6.79176 6.83093 6.91931 7.03807 7.20135 7.25819 7.41846 7.54121 7.58734 7.65509 8.00425 8.35576 8.41029 8.45108 8.80984 9.41097 10.86679 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.019449 B = 0.007701 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.343327 B = 3635.099547 C = 4416.706016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.075 3.925 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.484 4.484 8 H 0.062 0.938 9 C 0.055 3.945 10 C 0.078 3.922 11 N -0.526 5.526 12 C 0.042 3.958 13 C -0.118 4.118 14 C -0.086 4.086 15 C -0.111 4.111 16 C 0.072 3.928 17 O -0.579 6.579 18 C -0.103 4.103 19 C 0.055 3.945 20 C -0.204 4.204 21 C -0.199 4.199 22 H 0.262 0.738 23 H 0.097 0.903 24 H 0.028 0.972 25 H 0.132 0.868 26 H 0.028 0.972 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.375 0.625 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.023 0.977 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 0.956 9.326 9.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.128 4.128 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.055 3.945 10 C -0.048 4.048 11 N -0.251 5.251 12 C -0.086 4.086 13 C -0.156 4.156 14 C -0.105 4.105 15 C -0.148 4.148 16 C -0.005 4.005 17 O -0.384 6.384 18 C -0.141 4.141 19 C -0.074 4.074 20 C -0.243 4.243 21 C -0.236 4.236 22 H 0.073 0.927 23 H 0.114 0.886 24 H 0.046 0.954 25 H 0.150 0.850 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.221 0.779 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.751 0.132 9.615 9.774 hybrid contribution 0.161 2.101 -0.443 2.153 sum 1.912 2.232 9.173 9.632 Atomic orbital electron populations 1.69761 1.05944 1.26691 1.48612 1.24945 0.94731 0.98780 0.94300 0.86851 0.80081 0.83342 0.79140 1.20123 1.21186 1.19466 1.20379 0.94834 0.89645 1.47192 0.91951 1.18937 0.94598 0.88251 0.92756 1.21896 0.97012 0.99880 0.86059 1.61972 1.16882 1.39643 1.06591 1.22996 0.98033 0.91342 0.96187 1.21873 0.97154 1.00586 0.95950 1.21176 0.97013 0.98669 0.93653 1.21561 0.98487 0.97053 0.97722 1.22331 0.95567 0.98264 0.84374 1.86458 1.66158 1.50148 1.35674 1.21543 0.97800 0.98129 0.96635 1.21969 0.93998 0.99057 0.92347 1.22933 0.99040 1.07495 0.94812 1.22771 0.95927 1.02771 1.02174 0.92733 0.88600 0.95390 0.85030 0.95348 0.92981 0.91945 0.91947 0.91942 0.91343 0.93111 0.93982 0.77860 0.92784 0.91562 0.95863 0.92298 0.91956 0.90691 0.91152 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.02 10.53 55.43 0.58 -22.43 16 2 C 0.08 1.91 3.00 -17.81 -0.05 1.86 16 3 Si 0.88 19.87 29.13 -169.99 -4.95 14.92 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.48 -12.36 5.91 -34.44 -0.20 -12.56 16 8 H 0.06 1.61 7.85 -52.48 -0.41 1.20 16 9 C 0.06 1.33 1.62 -155.66 -0.25 1.08 16 10 C 0.08 1.84 4.82 -3.83 -0.02 1.82 16 11 N -0.53 -11.22 4.76 -234.67 -1.12 -12.34 16 12 C 0.04 0.89 3.76 -3.84 -0.01 0.88 16 13 C -0.12 -2.10 5.08 -26.65 -0.14 -2.24 16 14 C -0.09 -1.36 2.25 -90.49 -0.20 -1.56 16 15 C -0.11 -1.53 5.06 -26.73 -0.14 -1.67 16 16 C 0.07 0.93 6.81 37.16 0.25 1.18 16 17 O -0.58 -7.21 13.66 -35.23 -0.48 -7.69 16 18 C -0.10 -1.63 5.38 -26.65 -0.14 -1.77 16 19 C 0.06 1.03 5.46 -3.83 -0.02 1.01 16 20 C -0.20 -4.65 9.91 -26.69 -0.26 -4.91 16 21 C -0.20 -4.38 9.96 -26.69 -0.27 -4.65 16 22 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 23 H 0.10 2.49 5.31 -51.93 -0.28 2.22 16 24 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 25 H 0.13 3.15 4.35 -51.93 -0.23 2.93 16 26 H 0.03 0.67 6.47 -51.93 -0.34 0.34 16 27 H 0.05 0.88 6.71 -51.93 -0.35 0.53 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 32 H 0.05 0.65 6.64 -51.93 -0.34 0.31 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.38 2.87 9.12 45.56 0.42 3.29 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.07 1.72 8.14 -51.93 -0.42 1.29 16 41 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 LS Contribution 317.07 15.07 4.78 4.78 Total: -1.00 -26.88 317.07 -9.22 -36.10 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.58 Total: 8.19 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -1.46 Total: -21.53 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: -0.53 Total: -34.77 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.48 Total: -7.69 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.95 Total: 14.92 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.88 -9.22 -36.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400990525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.330 kcal (2) G-P(sol) polarization free energy of solvation -26.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds