Wall clock time and date at job start Sun Mar 29 2020 23:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00378 * 2 1 4 4 N 1.46895 * 109.47686 * 123.73596 * 3 2 1 5 5 C 1.46897 * 111.00019 * 298.92181 * 4 3 2 6 6 C 1.50700 * 109.47113 * 288.21196 * 5 4 3 7 7 H 1.08003 * 119.99586 * 4.82154 * 6 5 4 8 8 C 1.37869 * 120.00221 * 184.81879 * 6 5 4 9 9 N 1.31519 * 120.00043 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00107 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47209 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47250 * 120.00145 * 10 8 6 13 13 H 1.48502 * 109.47283 * 240.00319 * 10 8 6 14 14 C 1.46912 * 110.99670 * 62.86954 * 4 3 2 15 15 C 1.53003 * 109.46808 * 76.77270 * 14 4 3 16 16 H 1.08998 * 110.55095 * 51.52518 * 15 14 4 17 17 C 1.54991 * 110.61563 * 174.40338 * 15 14 4 18 18 C 1.54809 * 102.09453 * 155.52725 * 17 15 14 19 19 C 1.54107 * 104.18200 * 339.11951 * 18 17 15 20 20 C 1.53002 * 109.87646 * 117.39730 * 19 18 17 21 21 C 1.53002 * 109.87550 * 238.54378 * 19 18 17 22 22 O 1.43744 * 107.29563 * 357.96922 * 19 18 17 23 23 H 1.07992 * 120.00304 * 180.02562 * 1 2 3 24 24 H 1.08004 * 119.99858 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99565 * 179.97438 * 2 1 3 26 26 H 1.09007 * 109.47162 * 3.73520 * 3 2 1 27 27 H 1.09004 * 109.46835 * 243.73961 * 3 2 1 28 28 H 1.09004 * 109.47230 * 48.21266 * 5 4 3 29 29 H 1.09004 * 109.47555 * 168.21001 * 5 4 3 30 30 H 0.97006 * 119.99923 * 179.97438 * 9 8 6 31 31 H 1.08992 * 109.46721 * 316.77456 * 14 4 3 32 32 H 1.08997 * 109.46922 * 196.77040 * 14 4 3 33 33 H 1.09001 * 110.90725 * 273.72775 * 17 15 14 34 34 H 1.08999 * 110.90732 * 37.32379 * 17 15 14 35 35 H 1.08999 * 110.48691 * 97.78919 * 18 17 15 36 36 H 1.08998 * 110.48912 * 220.31481 * 18 17 15 37 37 H 1.08998 * 109.47372 * 59.99610 * 20 19 18 38 38 H 1.08997 * 109.47016 * 180.02562 * 20 19 18 39 39 H 1.08996 * 109.47174 * 299.99563 * 20 19 18 40 40 H 1.09004 * 109.46861 * 60.00483 * 21 19 18 41 41 H 1.08998 * 109.46539 * 180.02562 * 21 19 18 42 42 H 1.08997 * 109.47453 * 300.00086 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9745 1.3446 1.1517 5 6 2.2302 1.2550 2.4150 6 6 1.4918 2.5465 2.6556 7 1 1.5044 3.3235 1.9055 8 6 0.8002 2.7361 3.8330 9 7 0.7852 1.7901 4.7466 10 14 -0.1146 4.3372 4.1316 11 1 0.0587 5.2323 2.9594 12 1 -1.5587 4.0530 4.3287 13 1 0.4296 4.9996 5.3442 14 6 3.9855 0.2826 1.0599 15 6 5.0543 0.6826 0.0408 16 1 5.4368 1.6797 0.2589 17 6 6.2074 -0.3528 0.0243 18 6 6.7914 -0.1655 -1.3971 19 6 5.6497 0.5004 -2.1896 20 6 6.0866 1.8874 -2.6652 21 6 5.2736 -0.3699 -3.3905 22 8 4.5259 0.6197 -1.3013 23 1 -0.5400 -0.9352 0.0004 24 1 -0.5400 0.9354 -0.0004 25 1 1.8499 -0.9353 0.0004 26 1 1.3572 2.1325 0.0670 27 1 2.6390 1.3922 -0.9217 28 1 1.5163 0.4333 2.3586 29 1 2.9260 1.0761 3.2348 30 1 0.2989 1.9236 5.5752 31 1 3.5099 -0.6453 0.7424 32 1 4.4498 0.1377 2.0354 33 1 6.9521 -0.1179 0.7849 34 1 5.8238 -1.3644 0.1571 35 1 7.6654 0.4852 -1.3678 36 1 7.0495 -1.1302 -1.8338 37 1 6.9622 1.7923 -3.3072 38 1 5.2745 2.3523 -3.2242 39 1 6.3340 2.5061 -1.8026 40 1 4.9456 -1.3489 -3.0411 41 1 4.4663 0.1072 -3.9462 42 1 6.1411 -0.4877 -4.0398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428843094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:32 Heat of formation + Delta-G solvation = -30.864177 kcal Electronic energy + Delta-G solvation = -19756.193685 eV Core-core repulsion = 16929.522348 eV Total energy + Delta-G solvation = -2826.671337 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.80028 -37.08554 -33.27572 -32.73982 -32.17575 -31.40570 -28.13703 -27.38285 -26.56234 -24.60780 -22.86670 -20.90545 -20.74813 -19.95480 -18.61192 -16.45414 -16.13503 -15.38254 -14.94080 -14.72163 -14.42634 -14.10452 -13.84934 -13.46451 -13.28854 -12.94035 -12.42348 -12.27982 -12.12212 -12.03993 -11.63073 -11.45638 -11.25733 -11.07732 -10.98233 -10.85458 -10.64740 -10.57606 -10.50961 -10.33312 -10.22239 -9.75929 -9.33305 -9.09822 -8.57964 -8.34307 -7.11911 -5.94917 -3.94634 3.02317 3.35286 3.42507 3.47858 3.97901 4.48137 4.63037 4.74330 4.85889 5.01226 5.17982 5.31128 5.40212 5.49171 5.56391 5.61297 5.67798 5.69355 5.76226 5.79158 5.84000 5.91024 5.93343 5.96057 6.14351 6.17473 6.25699 6.31159 6.41406 6.50075 6.62478 6.93736 7.28169 7.32950 7.36195 7.44619 7.54409 7.90176 8.18749 8.34406 8.64883 9.12759 9.68550 11.16033 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.028422 B = 0.005309 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.909974 B = 5272.972068 C = 5473.975273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.169 4.169 3 C 0.087 3.913 4 N -0.527 5.527 5 C 0.189 3.811 6 C -0.497 4.497 7 H 0.061 0.939 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.056 3.944 15 C 0.087 3.913 16 H 0.075 0.925 17 C -0.151 4.151 18 C -0.144 4.144 19 C 0.093 3.907 20 C -0.161 4.161 21 C -0.141 4.141 22 O -0.354 6.354 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.083 0.917 28 H -0.003 1.003 29 H 0.027 0.973 30 H 0.259 0.741 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.529 -4.901 -13.417 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.188 4.188 3 C -0.041 4.041 4 N -0.249 5.249 5 C 0.064 3.936 6 C -0.536 4.536 7 H 0.080 0.920 8 C -0.147 4.147 9 N -0.541 5.541 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.073 4.073 15 C 0.029 3.971 16 H 0.093 0.907 17 C -0.190 4.190 18 C -0.182 4.182 19 C 0.053 3.947 20 C -0.218 4.218 21 C -0.198 4.198 22 O -0.274 6.274 23 H 0.101 0.899 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.015 0.985 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.495 -4.452 -13.290 17.510 hybrid contribution -0.755 -0.069 0.497 0.907 sum 9.739 -4.520 -12.793 16.702 Atomic orbital electron populations 1.23660 0.96099 1.00889 1.02227 1.23555 0.96453 1.00105 0.98715 1.21364 0.94675 0.93565 0.94458 1.62365 1.15117 1.43225 1.04215 1.19800 0.92291 0.96832 0.84693 1.21178 1.29321 1.01057 1.02022 0.92040 1.24959 0.96889 0.96709 0.96093 1.69973 1.43178 1.32998 1.07936 0.86495 0.79362 0.83772 0.78117 1.19706 1.21215 1.21134 1.22149 0.93758 0.94236 0.97136 1.23246 0.92866 0.97915 0.83029 0.90716 1.23147 0.98488 1.00679 0.96645 1.22996 0.98301 1.01165 0.95761 1.22052 0.86813 0.94533 0.91285 1.22234 1.01177 0.96849 1.01587 1.21871 1.01589 0.99706 0.96622 1.88982 1.28290 1.94344 1.15779 0.89939 0.88633 0.88789 0.90609 0.89914 0.98486 0.95482 0.93161 0.94479 0.90448 0.90466 0.90794 0.90948 0.90921 0.92281 0.91978 0.92168 0.92143 0.92039 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.58 14.32 29.01 0.42 -3.17 16 2 C -0.17 -3.28 7.46 -36.03 -0.27 -3.55 16 3 C 0.09 1.80 5.46 -4.98 -0.03 1.77 16 4 N -0.53 -11.62 4.58 -237.51 -1.09 -12.71 16 5 C 0.19 4.98 4.59 -4.98 -0.02 4.96 16 6 C -0.50 -14.19 8.65 -34.44 -0.30 -14.49 16 7 H 0.06 1.76 7.33 -52.48 -0.38 1.37 16 8 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 10 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.06 1.03 4.73 -3.82 -0.02 1.01 16 15 C 0.09 1.34 3.45 -25.68 -0.09 1.25 16 16 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 17 C -0.15 -1.82 6.59 -24.73 -0.16 -1.99 16 18 C -0.14 -1.52 6.27 -25.20 -0.16 -1.67 16 19 C 0.09 1.11 1.19 -90.04 -0.11 1.01 16 20 C -0.16 -1.78 8.61 37.16 0.32 -1.46 16 21 C -0.14 -1.47 8.68 37.16 0.32 -1.14 16 22 O -0.35 -5.50 8.08 -35.23 -0.28 -5.79 16 23 H 0.08 1.38 8.06 -52.49 -0.42 0.96 16 24 H 0.10 1.83 7.84 -52.48 -0.41 1.41 16 25 H 0.09 1.76 6.64 -52.49 -0.35 1.41 16 26 H 0.08 1.69 6.79 -51.92 -0.35 1.34 16 27 H 0.08 1.62 5.66 -51.93 -0.29 1.32 16 28 H 0.00 -0.07 6.76 -51.93 -0.35 -0.43 16 29 H 0.03 0.76 7.68 -51.93 -0.40 0.37 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.04 0.68 5.98 -51.93 -0.31 0.37 16 32 H 0.08 1.41 7.63 -51.93 -0.40 1.01 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 35 H 0.07 0.68 7.70 -51.93 -0.40 0.28 16 36 H 0.07 0.67 7.70 -51.93 -0.40 0.27 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -30.34 329.49 -8.29 -38.62 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.40 Total: 0.30 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -0.19 Total: -16.01 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: -0.35 Total: -39.12 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.28 Total: -5.79 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.34 -8.29 -38.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428843094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.759 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds