Wall clock time and date at job start Sun Mar 29 2020 23:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00378 * 2 1 4 4 N 1.46895 * 109.47686 * 123.73596 * 3 2 1 5 5 C 1.46897 * 111.00019 * 298.92181 * 4 3 2 6 6 C 1.50700 * 109.47113 * 288.21196 * 5 4 3 7 7 H 1.08003 * 119.99586 * 4.82154 * 6 5 4 8 8 C 1.37869 * 120.00221 * 184.81879 * 6 5 4 9 9 N 1.31519 * 120.00043 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00107 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47209 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47250 * 120.00145 * 10 8 6 13 13 H 1.48502 * 109.47283 * 240.00319 * 10 8 6 14 14 C 1.46912 * 110.99670 * 62.86954 * 4 3 2 15 15 C 1.53003 * 109.46808 * 76.77270 * 14 4 3 16 16 H 1.08998 * 110.55095 * 51.52518 * 15 14 4 17 17 C 1.54991 * 110.61563 * 174.40338 * 15 14 4 18 18 C 1.54809 * 102.09453 * 155.52725 * 17 15 14 19 19 C 1.54107 * 104.18200 * 339.11951 * 18 17 15 20 20 C 1.53002 * 109.87646 * 117.39730 * 19 18 17 21 21 C 1.53002 * 109.87550 * 238.54378 * 19 18 17 22 22 O 1.43744 * 107.29563 * 357.96922 * 19 18 17 23 23 H 1.07992 * 120.00304 * 180.02562 * 1 2 3 24 24 H 1.08004 * 119.99858 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99565 * 179.97438 * 2 1 3 26 26 H 1.09007 * 109.47162 * 3.73520 * 3 2 1 27 27 H 1.09004 * 109.46835 * 243.73961 * 3 2 1 28 28 H 1.09004 * 109.47230 * 48.21266 * 5 4 3 29 29 H 1.09004 * 109.47555 * 168.21001 * 5 4 3 30 30 H 0.97006 * 119.99923 * 179.97438 * 9 8 6 31 31 H 1.08992 * 109.46721 * 316.77456 * 14 4 3 32 32 H 1.08997 * 109.46922 * 196.77040 * 14 4 3 33 33 H 1.09001 * 110.90725 * 273.72775 * 17 15 14 34 34 H 1.08999 * 110.90732 * 37.32379 * 17 15 14 35 35 H 1.08999 * 110.48691 * 97.78919 * 18 17 15 36 36 H 1.08998 * 110.48912 * 220.31481 * 18 17 15 37 37 H 1.08998 * 109.47372 * 59.99610 * 20 19 18 38 38 H 1.08997 * 109.47016 * 180.02562 * 20 19 18 39 39 H 1.08996 * 109.47174 * 299.99563 * 20 19 18 40 40 H 1.09004 * 109.46861 * 60.00483 * 21 19 18 41 41 H 1.08998 * 109.46539 * 180.02562 * 21 19 18 42 42 H 1.08997 * 109.47453 * 300.00086 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9745 1.3446 1.1517 5 6 2.2302 1.2550 2.4150 6 6 1.4918 2.5465 2.6556 7 1 1.5044 3.3235 1.9055 8 6 0.8002 2.7361 3.8330 9 7 0.7852 1.7901 4.7466 10 14 -0.1146 4.3372 4.1316 11 1 0.0587 5.2323 2.9594 12 1 -1.5587 4.0530 4.3287 13 1 0.4296 4.9996 5.3442 14 6 3.9855 0.2826 1.0599 15 6 5.0543 0.6826 0.0408 16 1 5.4368 1.6797 0.2589 17 6 6.2074 -0.3528 0.0243 18 6 6.7914 -0.1655 -1.3971 19 6 5.6497 0.5004 -2.1896 20 6 6.0866 1.8874 -2.6652 21 6 5.2736 -0.3699 -3.3905 22 8 4.5259 0.6197 -1.3013 23 1 -0.5400 -0.9352 0.0004 24 1 -0.5400 0.9354 -0.0004 25 1 1.8499 -0.9353 0.0004 26 1 1.3572 2.1325 0.0670 27 1 2.6390 1.3922 -0.9217 28 1 1.5163 0.4333 2.3586 29 1 2.9260 1.0761 3.2348 30 1 0.2989 1.9236 5.5752 31 1 3.5099 -0.6453 0.7424 32 1 4.4498 0.1377 2.0354 33 1 6.9521 -0.1179 0.7849 34 1 5.8238 -1.3644 0.1571 35 1 7.6654 0.4852 -1.3678 36 1 7.0495 -1.1302 -1.8338 37 1 6.9622 1.7923 -3.3072 38 1 5.2745 2.3523 -3.2242 39 1 6.3340 2.5061 -1.8026 40 1 4.9456 -1.3489 -3.0411 41 1 4.4663 0.1072 -3.9462 42 1 6.1411 -0.4877 -4.0398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428843094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:31 Heat of formation + Delta-G solvation = -49.246093 kcal Electronic energy + Delta-G solvation = -19756.990785 eV Core-core repulsion = 16929.522348 eV Total energy + Delta-G solvation = -2827.468437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.89432 -38.74355 -34.87423 -34.41804 -33.47718 -32.73293 -29.79320 -28.30797 -28.17311 -26.29299 -24.32319 -22.52400 -22.10261 -20.91478 -20.21444 -18.35584 -17.59867 -16.93036 -16.31240 -16.11048 -15.89547 -15.71265 -15.26165 -14.64755 -14.51148 -14.26903 -14.02714 -13.69068 -13.29146 -13.13696 -12.92592 -12.84431 -12.65428 -12.56867 -12.50896 -12.37357 -12.28138 -12.10455 -11.98538 -11.72785 -11.47409 -11.41602 -11.07848 -10.58480 -10.44841 -10.15291 -8.92094 -8.16495 -6.24927 1.40207 1.40921 1.46442 1.54523 2.42070 2.92944 3.15327 3.34968 3.71169 3.94481 3.98347 4.09759 4.18651 4.22206 4.29793 4.37689 4.53973 4.62335 4.64115 4.71213 4.78471 4.84407 4.90151 4.97101 5.00003 5.02807 5.08634 5.14962 5.23547 5.25215 5.31064 5.34927 5.40060 5.47845 5.68613 5.73939 5.92121 6.12269 6.24843 6.46113 6.68893 6.90476 7.43631 8.94337 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.028422 B = 0.005309 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.909974 B = 5272.972068 C = 5473.975273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.180 4.180 3 C 0.095 3.905 4 N -0.535 5.535 5 C 0.207 3.793 6 C -0.514 4.514 7 H 0.055 0.945 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.278 1.278 14 C 0.057 3.943 15 C 0.092 3.908 16 H 0.062 0.938 17 C -0.146 4.146 18 C -0.137 4.137 19 C 0.081 3.919 20 C -0.159 4.159 21 C -0.137 4.137 22 O -0.378 6.378 23 H 0.106 0.894 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.052 0.948 27 H 0.095 0.905 28 H -0.026 1.026 29 H 0.001 0.999 30 H 0.263 0.737 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.434 -4.972 -14.639 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.200 4.200 3 C -0.032 4.032 4 N -0.258 5.258 5 C 0.081 3.919 6 C -0.552 4.552 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.789 3.211 11 H -0.191 1.191 12 H -0.205 1.205 13 H -0.204 1.204 14 C -0.072 4.072 15 C 0.034 3.966 16 H 0.080 0.920 17 C -0.184 4.184 18 C -0.174 4.174 19 C 0.042 3.958 20 C -0.216 4.216 21 C -0.195 4.195 22 O -0.299 6.299 23 H 0.124 0.876 24 H 0.107 0.893 25 H 0.121 0.879 26 H 0.071 0.929 27 H 0.113 0.887 28 H -0.008 1.008 29 H 0.019 0.981 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.415 -4.528 -14.537 19.030 hybrid contribution -1.024 -0.076 0.830 1.320 sum 10.391 -4.604 -13.708 17.806 Atomic orbital electron populations 1.23840 0.95997 1.01724 1.00960 1.23532 0.96808 0.99785 0.99835 1.21239 0.94298 0.93502 0.94203 1.62289 1.15368 1.45227 1.02885 1.19419 0.91247 0.95225 0.86038 1.21437 1.29902 1.01676 1.02190 0.92644 1.25820 0.97616 1.00257 0.95728 1.70089 1.43957 1.35039 1.08441 0.85414 0.78078 0.79415 0.78194 1.19054 1.20451 1.20354 1.22210 0.93492 0.93248 0.98206 1.23038 0.92669 0.98344 0.82586 0.92026 1.23114 0.97385 0.99486 0.98389 1.22994 0.97959 1.02336 0.94122 1.22364 0.86473 0.95543 0.91418 1.22226 1.01881 0.96072 1.01435 1.21876 1.02477 0.98924 0.96188 1.88932 1.30404 1.94526 1.16029 0.87572 0.89347 0.87866 0.92917 0.88749 1.00828 0.98127 0.92844 0.94406 0.90938 0.89158 0.90603 0.89465 0.89026 0.89676 0.92952 0.93280 0.92525 0.92882 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.98 14.32 67.78 0.97 -6.01 16 2 C -0.18 -7.04 7.46 25.65 0.19 -6.85 16 3 C 0.10 4.00 5.46 85.56 0.47 4.46 16 4 N -0.54 -24.26 4.58 -905.34 -4.15 -28.41 16 5 C 0.21 11.30 4.59 85.56 0.39 11.69 16 6 C -0.51 -29.98 8.65 25.60 0.22 -29.76 16 7 H 0.06 3.24 7.33 -2.91 -0.02 3.21 16 8 C 0.00 0.20 5.46 84.65 0.46 0.66 16 9 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 10 Si 0.96 45.48 29.54 68.60 2.03 47.50 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 14 C 0.06 2.11 4.73 86.30 0.41 2.52 16 15 C 0.09 2.78 3.45 31.28 0.11 2.89 16 16 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 17 C -0.15 -3.24 6.59 31.89 0.21 -3.03 16 18 C -0.14 -2.46 6.27 31.59 0.20 -2.26 16 19 C 0.08 1.78 1.19 -10.42 -0.01 1.77 16 20 C -0.16 -3.22 8.61 71.98 0.62 -2.60 16 21 C -0.14 -2.55 8.68 71.98 0.62 -1.92 16 22 O -0.38 -11.48 8.08 -148.98 -1.20 -12.69 16 23 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16 24 H 0.09 3.40 7.84 -2.91 -0.02 3.38 16 25 H 0.10 3.83 6.64 -2.91 -0.02 3.82 16 26 H 0.05 2.42 6.79 -2.38 -0.02 2.41 16 27 H 0.09 3.73 5.66 -2.38 -0.01 3.72 16 28 H -0.03 -1.52 6.76 -2.39 -0.02 -1.53 16 29 H 0.00 0.04 7.68 -2.38 -0.02 0.02 16 30 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 31 H 0.04 1.40 5.98 -2.39 -0.01 1.38 16 32 H 0.07 2.72 7.63 -2.39 -0.02 2.70 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 1.67 8.06 -2.39 -0.02 1.65 16 35 H 0.09 1.34 7.70 -2.39 -0.02 1.32 16 36 H 0.09 1.34 7.70 -2.39 -0.02 1.32 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.05 1.09 8.12 -2.39 -0.02 1.07 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -65.69 329.49 2.78 -62.91 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.96 Total: 15.97 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 4.86 Total: -28.44 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -3.86 Total: -85.25 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -1.20 Total: -12.69 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -65.69 2.78 -62.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428843094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.665 kcal (2) G-P(sol) polarization free energy of solvation -65.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds