Wall clock time and date at job start Sun Mar 29 2020 23:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00043 * 2 1 4 4 H 1.48497 * 109.47258 * 270.00258 * 3 2 1 5 5 H 1.48502 * 109.46956 * 30.00523 * 3 2 1 6 6 H 1.48503 * 109.46976 * 149.99700 * 3 2 1 7 7 C 1.37873 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00267 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00319 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47502 * 176.13438 * 9 7 2 11 11 C 1.46897 * 110.99903 * 288.69488 * 10 9 7 12 12 C 1.52999 * 109.47364 * 169.99671 * 11 10 9 13 13 C 1.52997 * 109.47330 * 179.97438 * 12 11 10 14 14 H 1.09001 * 110.45471 * 52.40269 * 13 12 11 15 15 C 1.54509 * 110.50921 * 174.99989 * 13 12 11 16 16 C 1.54481 * 104.06232 * 118.64967 * 15 13 12 17 17 O 1.44425 * 104.80148 * 23.97645 * 16 15 13 18 18 C 1.44419 * 105.27917 * 319.49036 * 17 16 15 19 19 C 1.46893 * 111.00180 * 164.73912 * 10 9 7 20 20 C 1.52997 * 109.47267 * 288.51868 * 19 10 9 21 21 C 1.53005 * 117.50052 * 115.49468 * 20 19 10 22 22 C 1.53002 * 117.50565 * 184.15702 * 20 19 10 23 23 H 0.97001 * 120.00042 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46916 * 56.13703 * 9 7 2 25 25 H 1.08999 * 109.47111 * 296.13372 * 9 7 2 26 26 H 1.09004 * 109.47226 * 289.99668 * 11 10 9 27 27 H 1.09000 * 109.47722 * 49.99966 * 11 10 9 28 28 H 1.08996 * 109.47564 * 300.00304 * 12 11 10 29 29 H 1.09010 * 109.46753 * 59.99984 * 12 11 10 30 30 H 1.09004 * 110.51317 * 237.29220 * 15 13 12 31 31 H 1.09001 * 110.51616 * 359.86700 * 15 13 12 32 32 H 1.09003 * 110.37523 * 142.81033 * 16 15 13 33 33 H 1.09000 * 110.37030 * 265.15017 * 16 15 13 34 34 H 1.09002 * 110.37286 * 281.67962 * 18 17 16 35 35 H 1.08994 * 110.37415 * 159.34182 * 18 17 16 36 36 H 1.09005 * 109.47416 * 168.51777 * 19 10 9 37 37 H 1.09002 * 109.47311 * 48.52042 * 19 10 9 38 38 H 1.09000 * 115.54895 * 329.83089 * 20 19 10 39 39 H 1.08995 * 117.50061 * 215.00595 * 21 20 19 40 40 H 1.08995 * 117.49807 * 0.03083 * 21 20 19 41 41 H 1.09006 * 117.49065 * 359.97438 * 22 20 19 42 42 H 1.08994 * 117.50075 * 144.96909 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5760 0.0927 11 6 3.7617 -3.1307 1.4317 12 6 4.0508 -4.6331 1.4206 13 6 3.8020 -5.2107 2.8153 14 1 2.8087 -4.9355 3.1699 15 6 3.9658 -6.7470 2.8021 16 6 5.1295 -7.0089 3.7837 17 8 5.1384 -5.8610 4.6601 18 6 4.8862 -4.7261 3.8033 19 6 5.4241 -2.6553 -0.2632 20 6 5.5860 -2.4385 -1.7691 21 6 6.3528 -1.1956 -2.2255 22 6 6.9917 -2.5805 -2.3563 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6221 0.8539 25 1 3.8752 -0.7408 -0.9221 26 1 4.4173 -2.6398 2.1509 27 1 2.7223 -2.9629 1.7140 28 1 3.3953 -5.1240 0.7014 29 1 5.0903 -4.8009 1.1383 30 1 3.0543 -7.2313 3.1525 31 1 4.2217 -7.0953 1.8014 32 1 4.9476 -7.9200 4.3536 33 1 6.0732 -7.0806 3.2429 34 1 5.7925 -4.4477 3.2655 35 1 4.5172 -3.8836 4.3882 36 1 5.8119 -3.6378 0.0062 37 1 5.9770 -1.8862 0.2761 38 1 4.7482 -2.7670 -2.3841 39 1 6.0195 -0.7065 -3.1407 40 1 6.7423 -0.5327 -1.4530 41 1 7.8013 -2.8280 -1.6696 42 1 7.0787 -3.0029 -3.3573 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438124157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:36 Heat of formation + Delta-G solvation = -27.325472 kcal Electronic energy + Delta-G solvation = -19237.350930 eV Core-core repulsion = 16410.833043 eV Total energy + Delta-G solvation = -2826.517888 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.50894 -37.97696 -35.86580 -33.56676 -32.32196 -30.09668 -28.31690 -27.58014 -24.97773 -23.18404 -22.23920 -21.85625 -20.67103 -20.11335 -19.52898 -16.83721 -16.43666 -15.82472 -15.50509 -15.25759 -14.75074 -14.50204 -13.99260 -13.73837 -13.54349 -12.96639 -12.75896 -12.50164 -12.20558 -11.92520 -11.86221 -11.43944 -11.34042 -11.25208 -10.90630 -10.78570 -10.56520 -10.48855 -10.27494 -10.16958 -10.01972 -9.84085 -9.78735 -9.42649 -9.24556 -8.55054 -7.37468 -6.04099 -4.00644 3.28480 3.35916 3.37905 3.97351 4.07229 4.42703 4.53749 4.66567 4.81180 4.95612 5.08934 5.14852 5.19661 5.27916 5.28481 5.39486 5.52261 5.62282 5.66046 5.76925 5.78880 5.80447 5.83987 5.85743 5.96103 6.04128 6.08448 6.09136 6.16063 6.31917 6.34528 6.55704 6.61822 6.74027 6.78697 6.92260 7.00654 7.65011 7.91968 8.07649 8.68115 9.05747 9.58526 11.09173 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.015723 B = 0.006225 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.376412 B = 4497.090947 C = 5750.793821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.871 3.129 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.506 4.506 8 H 0.080 0.920 9 C 0.161 3.839 10 N -0.525 5.525 11 C 0.062 3.938 12 C -0.106 4.106 13 C -0.120 4.120 14 H 0.087 0.913 15 C -0.151 4.151 16 C 0.044 3.956 17 O -0.381 6.381 18 C 0.049 3.951 19 C 0.080 3.920 20 C -0.131 4.131 21 C -0.185 4.185 22 C -0.186 4.186 23 H 0.263 0.737 24 H -0.013 1.013 25 H 0.029 0.971 26 H 0.018 0.982 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.022 0.978 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.473 -10.097 2.516 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.699 3.301 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.544 4.544 8 H 0.098 0.902 9 C 0.035 3.965 10 N -0.248 5.248 11 C -0.066 4.066 12 C -0.144 4.144 13 C -0.140 4.140 14 H 0.105 0.895 15 C -0.189 4.189 16 C -0.032 4.032 17 O -0.300 6.300 18 C -0.028 4.028 19 C -0.048 4.048 20 C -0.150 4.150 21 C -0.222 4.222 22 C -0.224 4.224 23 H 0.073 0.927 24 H 0.005 0.995 25 H 0.047 0.953 26 H 0.036 0.964 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.132 0.868 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.079 -10.240 2.415 16.018 hybrid contribution 0.782 1.569 0.234 1.769 sum 12.861 -8.671 2.649 15.736 Atomic orbital electron populations 1.69894 1.06085 1.26731 1.51368 1.24886 0.94689 0.98736 0.94995 0.86916 0.80325 0.84248 0.78613 1.20154 1.21271 1.19312 1.21050 0.88843 0.94605 1.49904 0.90170 1.20206 0.96923 0.83983 0.95380 1.61898 1.13491 1.23377 1.26059 1.22029 1.02394 0.92677 0.89496 1.21708 1.01350 0.96582 0.94745 1.22553 1.00453 0.94383 0.96588 0.89496 1.23005 0.99241 0.96275 1.00340 1.23391 0.97680 0.90064 0.92112 1.89094 1.93156 1.16186 1.31599 1.23567 0.97300 0.89679 0.92224 1.21688 0.90724 0.99646 0.92751 1.22314 0.94502 1.01230 0.96932 1.23010 1.04965 0.91043 1.03193 1.22934 0.96745 1.00784 1.01928 0.92739 0.99504 0.95348 0.96400 0.89246 0.90711 0.92415 0.90787 0.90329 0.89500 0.92585 0.92337 0.89072 0.91315 0.95950 0.86831 0.89100 0.89355 0.89424 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 21.54 27.55 -169.99 -4.68 16.85 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.43 6.43 56.52 0.36 -6.06 16 7 C -0.51 -14.19 8.94 -34.44 -0.31 -14.50 16 8 H 0.08 2.45 7.90 -52.48 -0.41 2.04 16 9 C 0.16 3.86 3.66 -4.98 -0.02 3.84 16 10 N -0.52 -10.56 4.42 -236.08 -1.04 -11.60 16 11 C 0.06 1.12 4.69 -3.83 -0.02 1.10 16 12 C -0.11 -1.51 4.39 -26.73 -0.12 -1.63 16 13 C -0.12 -1.53 3.11 -89.05 -0.28 -1.81 16 14 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 15 C -0.15 -1.61 6.74 -25.16 -0.17 -1.78 16 16 C 0.04 0.47 7.63 37.93 0.29 0.76 16 17 O -0.38 -5.19 11.65 -35.23 -0.41 -5.60 16 18 C 0.05 0.62 6.51 37.93 0.25 0.87 16 19 C 0.08 1.34 5.12 -3.83 -0.02 1.32 16 20 C -0.13 -2.08 4.95 -90.62 -0.45 -2.53 16 21 C -0.19 -2.71 10.03 -26.69 -0.27 -2.98 16 22 C -0.19 -2.38 10.26 -26.69 -0.27 -2.65 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H -0.01 -0.31 6.85 -51.93 -0.36 -0.67 16 25 H 0.03 0.69 6.65 -51.93 -0.35 0.34 16 26 H 0.02 0.31 7.61 -51.93 -0.40 -0.08 16 27 H 0.09 1.85 7.13 -51.93 -0.37 1.48 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.76 6.11 -51.92 -0.32 0.45 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.77 7.73 -51.93 -0.40 0.37 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.72 7.74 -51.93 -0.40 0.32 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.02 5.95 -51.93 -0.31 0.71 16 37 H 0.02 0.38 7.80 -51.93 -0.40 -0.02 16 38 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.09 1.29 8.03 -51.93 -0.42 0.87 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 328.95 15.07 4.96 4.96 Total: -1.00 -30.26 328.95 -9.42 -39.68 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.53 Total: 0.58 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -1.48 Total: -18.12 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.27 Total: -38.35 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.41 Total: -5.60 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.68 Total: 16.85 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.26 -9.42 -39.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438124157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.353 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds