Wall clock time and date at job start Sun Mar 29 2020 23:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00043 * 2 1 4 4 H 1.48497 * 109.47258 * 270.00258 * 3 2 1 5 5 H 1.48502 * 109.46956 * 30.00523 * 3 2 1 6 6 H 1.48503 * 109.46976 * 149.99700 * 3 2 1 7 7 C 1.37873 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00267 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00319 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47502 * 176.13438 * 9 7 2 11 11 C 1.46897 * 110.99903 * 288.69488 * 10 9 7 12 12 C 1.52999 * 109.47364 * 169.99671 * 11 10 9 13 13 C 1.52997 * 109.47330 * 179.97438 * 12 11 10 14 14 H 1.09001 * 110.45471 * 52.40269 * 13 12 11 15 15 C 1.54509 * 110.50921 * 174.99989 * 13 12 11 16 16 C 1.54481 * 104.06232 * 118.64967 * 15 13 12 17 17 O 1.44425 * 104.80148 * 23.97645 * 16 15 13 18 18 C 1.44419 * 105.27917 * 319.49036 * 17 16 15 19 19 C 1.46893 * 111.00180 * 164.73912 * 10 9 7 20 20 C 1.52997 * 109.47267 * 288.51868 * 19 10 9 21 21 C 1.53005 * 117.50052 * 115.49468 * 20 19 10 22 22 C 1.53002 * 117.50565 * 184.15702 * 20 19 10 23 23 H 0.97001 * 120.00042 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46916 * 56.13703 * 9 7 2 25 25 H 1.08999 * 109.47111 * 296.13372 * 9 7 2 26 26 H 1.09004 * 109.47226 * 289.99668 * 11 10 9 27 27 H 1.09000 * 109.47722 * 49.99966 * 11 10 9 28 28 H 1.08996 * 109.47564 * 300.00304 * 12 11 10 29 29 H 1.09010 * 109.46753 * 59.99984 * 12 11 10 30 30 H 1.09004 * 110.51317 * 237.29220 * 15 13 12 31 31 H 1.09001 * 110.51616 * 359.86700 * 15 13 12 32 32 H 1.09003 * 110.37523 * 142.81033 * 16 15 13 33 33 H 1.09000 * 110.37030 * 265.15017 * 16 15 13 34 34 H 1.09002 * 110.37286 * 281.67962 * 18 17 16 35 35 H 1.08994 * 110.37415 * 159.34182 * 18 17 16 36 36 H 1.09005 * 109.47416 * 168.51777 * 19 10 9 37 37 H 1.09002 * 109.47311 * 48.52042 * 19 10 9 38 38 H 1.09000 * 115.54895 * 329.83089 * 20 19 10 39 39 H 1.08995 * 117.50061 * 215.00595 * 21 20 19 40 40 H 1.08995 * 117.49807 * 0.03083 * 21 20 19 41 41 H 1.09006 * 117.49065 * 359.97438 * 22 20 19 42 42 H 1.08994 * 117.50075 * 144.96909 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5760 0.0927 11 6 3.7617 -3.1307 1.4317 12 6 4.0508 -4.6331 1.4206 13 6 3.8020 -5.2107 2.8153 14 1 2.8087 -4.9355 3.1699 15 6 3.9658 -6.7470 2.8021 16 6 5.1295 -7.0089 3.7837 17 8 5.1384 -5.8610 4.6601 18 6 4.8862 -4.7261 3.8033 19 6 5.4241 -2.6553 -0.2632 20 6 5.5860 -2.4385 -1.7691 21 6 6.3528 -1.1956 -2.2255 22 6 6.9917 -2.5805 -2.3563 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6221 0.8539 25 1 3.8752 -0.7408 -0.9221 26 1 4.4173 -2.6398 2.1509 27 1 2.7223 -2.9629 1.7140 28 1 3.3953 -5.1240 0.7014 29 1 5.0903 -4.8009 1.1383 30 1 3.0543 -7.2313 3.1525 31 1 4.2217 -7.0953 1.8014 32 1 4.9476 -7.9200 4.3536 33 1 6.0732 -7.0806 3.2429 34 1 5.7925 -4.4477 3.2655 35 1 4.5172 -3.8836 4.3882 36 1 5.8119 -3.6378 0.0062 37 1 5.9770 -1.8862 0.2761 38 1 4.7482 -2.7670 -2.3841 39 1 6.0195 -0.7065 -3.1407 40 1 6.7423 -0.5327 -1.4530 41 1 7.8013 -2.8280 -1.6696 42 1 7.0787 -3.0029 -3.3573 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438124157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:36 Heat of formation + Delta-G solvation = -46.450162 kcal Electronic energy + Delta-G solvation = -19238.180239 eV Core-core repulsion = 16410.833043 eV Total energy + Delta-G solvation = -2827.347196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.52840 -39.30869 -37.16572 -35.06201 -34.18729 -31.19713 -30.07731 -28.76437 -26.48184 -24.46152 -23.40664 -23.10974 -22.06365 -21.23579 -20.90757 -18.97916 -17.41683 -17.06772 -16.69968 -16.37474 -16.29443 -15.89100 -15.35196 -15.25912 -14.85306 -14.44504 -14.27389 -13.97023 -13.52482 -13.36146 -13.15089 -12.73247 -12.58186 -12.34714 -12.32031 -12.22733 -12.11409 -11.91782 -11.62425 -11.50256 -11.47385 -11.34953 -11.06994 -10.77573 -10.73909 -10.62135 -8.98972 -8.28028 -6.29935 1.32547 1.33474 1.43735 2.33252 2.90597 3.04877 3.05805 3.22305 3.65305 3.80442 3.94861 4.01964 4.07166 4.16220 4.21455 4.31760 4.39348 4.48757 4.51416 4.56590 4.67833 4.75934 4.80106 4.83073 4.83972 4.87309 4.94196 4.94999 5.04953 5.07744 5.13890 5.18737 5.29157 5.34919 5.36907 5.44502 5.57811 5.86688 6.03053 6.44001 6.69277 6.76861 7.33645 8.88806 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.015723 B = 0.006225 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.376412 B = 4497.090947 C = 5750.793821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.254 1.254 7 C -0.510 4.510 8 H 0.037 0.963 9 C 0.175 3.825 10 N -0.540 5.540 11 C 0.065 3.935 12 C -0.090 4.090 13 C -0.121 4.121 14 H 0.070 0.930 15 C -0.146 4.146 16 C 0.041 3.959 17 O -0.402 6.402 18 C 0.050 3.950 19 C 0.084 3.916 20 C -0.159 4.159 21 C -0.195 4.195 22 C -0.152 4.152 23 H 0.266 0.734 24 H -0.018 1.018 25 H 0.030 0.970 26 H 0.026 0.974 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.024 0.976 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.465 -10.536 2.298 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.188 4.188 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.178 1.178 7 C -0.548 4.548 8 H 0.055 0.945 9 C 0.048 3.952 10 N -0.264 5.264 11 C -0.063 4.063 12 C -0.127 4.127 13 C -0.140 4.140 14 H 0.089 0.911 15 C -0.184 4.184 16 C -0.035 4.035 17 O -0.322 6.322 18 C -0.027 4.027 19 C -0.043 4.043 20 C -0.177 4.177 21 C -0.232 4.232 22 C -0.189 4.189 23 H 0.075 0.925 24 H 0.000 1.000 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.042 0.958 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.125 0.875 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.091 -10.703 2.195 18.631 hybrid contribution -0.198 1.604 0.295 1.643 sum 14.893 -9.099 2.491 17.630 Atomic orbital electron populations 1.70049 1.08023 1.27935 1.52958 1.25789 0.95525 1.02879 0.94616 0.85803 0.79323 0.79095 0.79283 1.18957 1.20776 1.17775 1.21272 0.91238 0.93041 1.49258 0.94498 1.19897 0.93970 0.86407 0.94927 1.61813 1.16297 1.20958 1.27301 1.21992 1.00201 0.95402 0.88742 1.21550 1.02151 0.93455 0.95566 1.22494 0.99784 0.96192 0.95530 0.91132 1.22991 0.99803 0.94268 1.01318 1.23598 0.98149 0.89717 0.92038 1.89075 1.93245 1.17120 1.32716 1.23545 0.97462 0.89595 0.92074 1.21752 0.88156 1.00985 0.93425 1.22224 0.95997 1.03395 0.96130 1.23091 1.05235 0.91672 1.03246 1.23022 0.94685 0.98402 1.02786 0.92539 1.00049 0.95235 0.95633 0.93181 0.91700 0.90383 0.90359 0.89026 0.87749 0.91107 0.91404 0.89701 0.88939 0.95817 0.89033 0.89054 0.89300 0.87497 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 2 C 0.01 0.53 5.47 84.65 0.46 0.99 16 3 Si 0.94 44.67 27.55 68.60 1.89 46.56 16 4 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.25 -11.36 6.43 99.48 0.64 -10.72 16 7 C -0.51 -29.72 8.94 25.60 0.23 -29.49 16 8 H 0.04 2.41 7.90 -2.91 -0.02 2.38 16 9 C 0.18 8.44 3.66 85.56 0.31 8.76 16 10 N -0.54 -21.77 4.42 -900.82 -3.98 -25.75 16 11 C 0.06 2.35 4.69 86.30 0.40 2.76 16 12 C -0.09 -2.47 4.39 30.59 0.13 -2.34 16 13 C -0.12 -2.98 3.11 -9.78 -0.03 -3.02 16 14 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 15 C -0.15 -2.84 6.74 31.61 0.21 -2.63 16 16 C 0.04 0.76 7.63 72.49 0.55 1.32 16 17 O -0.40 -10.27 11.65 -148.98 -1.74 -12.00 16 18 C 0.05 1.21 6.51 72.48 0.47 1.69 16 19 C 0.08 2.67 5.12 86.30 0.44 3.11 16 20 C -0.16 -4.76 4.95 -10.79 -0.05 -4.82 16 21 C -0.20 -5.28 10.03 30.62 0.31 -4.97 16 22 C -0.15 -3.33 10.26 30.62 0.31 -3.01 16 23 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 24 H -0.02 -0.89 6.85 -2.39 -0.02 -0.90 16 25 H 0.03 1.42 6.65 -2.39 -0.02 1.40 16 26 H 0.03 0.88 7.61 -2.39 -0.02 0.86 16 27 H 0.05 2.20 7.13 -2.39 -0.02 2.18 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.08 1.85 6.11 -2.38 -0.01 1.84 16 30 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.09 1.55 7.73 -2.39 -0.02 1.54 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.52 7.74 -2.39 -0.02 1.50 16 35 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.09 2.45 5.95 -2.38 -0.01 2.43 16 37 H 0.02 0.75 7.80 -2.39 -0.02 0.73 16 38 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 39 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.09 2.38 8.03 -2.39 -0.02 2.36 16 41 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -67.27 328.95 1.13 -66.13 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.90 Total: 16.26 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: 3.76 Total: -31.65 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -3.68 Total: -85.31 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -1.74 Total: -12.00 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.89 Total: 46.56 kcal Total: -67.27 1.13 -66.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438124157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.684 kcal (2) G-P(sol) polarization free energy of solvation -67.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds