Wall clock time and date at job start Mon Mar 30 2020 00:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47186 * 2 1 4 4 C 1.52993 * 115.55069 * 39.75310 * 3 2 1 5 5 C 1.53004 * 109.47148 * 91.55040 * 4 3 2 6 6 C 1.53004 * 109.47256 * 211.55117 * 4 3 2 7 7 C 1.53004 * 117.51694 * 254.05442 * 3 2 1 8 8 C 1.52998 * 117.49798 * 185.42496 * 3 2 1 9 9 H 1.09002 * 117.49917 * 0.02562 * 8 3 2 10 10 N 1.46499 * 117.50197 * 215.02266 * 8 3 2 11 11 C 1.34771 * 120.00404 * 155.02471 * 10 8 3 12 12 O 1.21279 * 120.00089 * 0.02562 * 11 10 8 13 13 C 1.50696 * 120.00217 * 180.02562 * 11 10 8 14 14 C 1.52999 * 109.47417 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47499 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99659 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00150 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00225 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00309 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47086 * 89.99701 * 19 17 15 21 21 H 1.48498 * 109.47354 * 210.00143 * 19 17 15 22 22 H 1.48502 * 109.46779 * 330.00151 * 19 17 15 23 23 H 1.09001 * 109.46862 * 172.37110 * 1 2 3 24 24 H 1.09001 * 109.47106 * 292.37077 * 1 2 3 25 25 H 1.08999 * 109.46971 * 52.37529 * 1 2 3 26 26 H 1.09004 * 109.47282 * 239.99521 * 2 1 3 27 27 H 1.09002 * 109.47080 * 119.99861 * 2 1 3 28 28 H 1.09001 * 109.47206 * 331.55380 * 4 3 2 29 29 H 1.09002 * 109.47130 * 56.87861 * 5 4 3 30 30 H 1.08995 * 109.47062 * 176.87594 * 5 4 3 31 31 H 1.08999 * 109.46857 * 296.87974 * 5 4 3 32 32 H 1.08999 * 109.46845 * 308.60599 * 6 4 3 33 33 H 1.08994 * 109.46894 * 68.60530 * 6 4 3 34 34 H 1.08999 * 109.46820 * 188.60685 * 6 4 3 35 35 H 1.08998 * 117.49850 * 145.02810 * 7 3 2 36 36 H 1.09001 * 117.49584 * 0.02562 * 7 3 2 37 37 H 0.97005 * 119.99738 * 335.03747 * 10 8 3 38 38 H 1.09004 * 109.47443 * 300.00688 * 13 11 10 39 39 H 1.08998 * 109.47129 * 60.00652 * 13 11 10 40 40 H 1.09004 * 109.46754 * 300.00348 * 14 13 11 41 41 H 1.08998 * 109.47061 * 59.99848 * 14 13 11 42 42 H 0.97000 * 120.00221 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.2595 2.4183 0.8827 5 6 1.8926 2.4652 2.2748 6 6 1.2982 3.8143 0.2576 7 6 2.6271 1.9847 -1.3047 8 6 3.5493 1.6581 -0.1283 9 1 4.1788 0.7723 -0.2131 10 7 4.1366 2.7830 0.6038 11 6 5.4375 2.7531 0.9547 12 8 6.1221 1.7951 0.6640 13 6 6.0414 3.9099 1.7083 14 6 7.5200 3.6254 1.9801 15 6 8.1238 4.7820 2.7342 16 1 7.5140 5.6349 2.9934 17 6 9.4546 4.7513 3.0933 18 7 9.9817 5.7609 3.7510 19 14 10.5091 3.2759 2.6456 20 1 11.1297 3.4965 1.3147 21 1 11.5741 3.1009 3.6656 22 1 9.6617 2.0572 2.6007 23 1 -0.3633 -1.0186 -0.1364 24 1 -0.3633 0.3911 0.9503 25 1 -0.3633 0.6274 -0.8139 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.2248 2.0857 0.9652 29 1 2.9427 2.7441 2.1872 30 1 1.3710 3.2011 2.8866 31 1 1.8153 1.4835 2.7423 32 1 2.3305 4.0839 0.0344 33 1 0.7149 3.8164 -0.6631 34 1 0.8768 4.5371 0.9563 35 1 2.4573 3.0366 -1.5342 36 1 2.6497 1.3138 -2.1635 37 1 3.5890 3.5492 0.8362 38 1 5.9500 4.8186 1.1134 39 1 5.5165 4.0408 2.6546 40 1 7.6117 2.7166 2.5749 41 1 8.0447 3.4947 1.0337 42 1 10.9179 5.7392 4.0040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457245403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:02 Heat of formation + Delta-G solvation = -26.916085 kcal Electronic energy + Delta-G solvation = -19244.439353 eV Core-core repulsion = 16417.939218 eV Total energy + Delta-G solvation = -2826.500135 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.46662 -38.43420 -33.81101 -33.50613 -33.16704 -31.70402 -30.95740 -27.44608 -26.21822 -24.14851 -22.57075 -22.39080 -20.84622 -19.99463 -18.42588 -17.15717 -16.36297 -15.92068 -15.21276 -14.98041 -14.85311 -14.11871 -14.06892 -13.79210 -13.23535 -13.14794 -13.04568 -12.57548 -12.51634 -12.41404 -12.15837 -11.85584 -11.46710 -11.38945 -11.31983 -11.03499 -10.89692 -10.76347 -10.49909 -10.17684 -10.04000 -9.85065 -9.77142 -9.23331 -9.15711 -8.50692 -8.42096 -6.02203 -4.00966 3.00685 3.32338 3.38889 3.45395 3.56497 3.76475 4.50927 4.51885 4.54019 4.60395 4.76502 4.95696 5.06396 5.18000 5.21346 5.27537 5.33334 5.39372 5.46479 5.51005 5.62043 5.70857 5.73585 5.77219 5.85608 5.89979 5.97102 5.97814 6.07781 6.08714 6.13341 6.16918 6.30776 6.68942 6.70812 7.37246 7.44213 7.74871 7.80468 8.50746 8.65328 9.00742 9.60879 11.10610 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.037378 B = 0.004334 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.928605 B = 6458.577095 C = 6785.616868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.128 4.128 4 C -0.064 4.064 5 C -0.165 4.165 6 C -0.158 4.158 7 C -0.193 4.193 8 C 0.095 3.905 9 H 0.133 0.867 10 N -0.712 5.712 11 C 0.510 3.490 12 O -0.538 6.538 13 C -0.123 4.123 14 C 0.002 3.998 15 C -0.525 4.525 16 H 0.072 0.928 17 C 0.069 3.931 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.261 1.261 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.402 0.598 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.024 0.976 41 H 0.019 0.981 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.565 -7.888 -8.018 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 C -0.130 4.130 4 C -0.082 4.082 5 C -0.223 4.223 6 C -0.216 4.216 7 C -0.231 4.231 8 C -0.012 4.012 9 H 0.151 0.849 10 N -0.368 5.368 11 C 0.299 3.701 12 O -0.413 6.413 13 C -0.163 4.163 14 C -0.036 4.036 15 C -0.563 4.563 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.543 5.543 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.185 1.185 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.243 0.757 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.854 -8.491 -8.123 23.937 hybrid contribution 0.318 -0.274 -0.162 0.450 sum -20.536 -8.765 -8.284 23.815 Atomic orbital electron populations 1.21780 0.95596 1.01335 1.01874 1.21031 0.95812 0.93244 1.02150 1.22069 0.95183 0.96462 0.99257 1.20702 0.99560 0.93669 0.94306 1.22174 1.02615 1.01949 0.95546 1.22148 1.01780 0.96540 1.01094 1.23832 1.04300 1.02613 0.92381 1.21633 0.90209 0.92813 0.96527 0.84923 1.46142 1.11318 1.21026 1.58343 1.21596 0.80650 0.89359 0.78456 1.90640 1.60593 1.35613 1.54502 1.21691 1.00291 0.94864 0.99455 1.19366 0.89306 0.97700 0.97224 1.21110 0.95678 1.03701 1.35779 0.90939 1.24968 0.97889 0.95937 0.94438 1.69913 1.13593 1.31030 1.39732 0.86794 0.80218 0.84301 0.78239 1.20241 1.21439 1.18528 0.92894 0.92425 0.92578 0.91719 0.91513 0.90067 0.90804 0.92710 0.92670 0.92370 0.92197 0.92180 0.87993 0.88503 0.75738 0.89613 0.89575 0.95780 0.96237 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.89 37.16 0.33 -0.73 16 2 C -0.08 -0.73 6.07 -26.73 -0.16 -0.89 16 3 C -0.13 -1.23 1.90 -154.51 -0.29 -1.52 16 4 C -0.06 -0.56 2.72 -90.62 -0.25 -0.81 16 5 C -0.17 -1.64 8.86 37.16 0.33 -1.31 16 6 C -0.16 -1.28 7.56 37.16 0.28 -1.00 16 7 C -0.19 -1.91 9.13 -26.73 -0.24 -2.15 16 8 C 0.09 1.19 5.89 -67.93 -0.40 0.79 16 9 H 0.13 1.91 7.40 -51.93 -0.38 1.52 16 10 N -0.71 -9.87 3.44 -53.81 -0.18 -10.06 16 11 C 0.51 9.43 7.83 -10.99 -0.09 9.34 16 12 O -0.54 -12.03 15.55 5.56 0.09 -11.94 16 13 C -0.12 -2.41 5.64 -27.89 -0.16 -2.57 16 14 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 15 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 16 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16 19 Si 0.88 22.74 27.47 -169.99 -4.67 18.07 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.40 6.73 -51.93 -0.35 0.05 16 25 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 26 H 0.06 0.53 7.95 -51.93 -0.41 0.12 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.65 5.60 -51.93 -0.29 0.36 16 29 H 0.07 0.85 4.66 -51.93 -0.24 0.61 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.51 4.35 -51.93 -0.23 0.29 16 33 H 0.06 0.44 7.81 -51.93 -0.41 0.04 16 34 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 35 H 0.10 0.96 5.83 -51.93 -0.30 0.66 16 36 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.40 4.70 4.23 -40.82 -0.17 4.53 16 38 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.02 0.63 7.15 -51.93 -0.37 0.26 16 41 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 322.85 15.07 4.87 4.87 Total: -1.00 -32.86 322.85 -7.24 -40.09 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.94 Total: 0.70 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -1.17 Total: -14.37 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.59 Total: -37.42 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.67 Total: 18.07 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.86 -7.24 -40.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457245403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.177 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds