Wall clock time and date at job start Mon Mar 30 2020 00:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47186 * 2 1 4 4 C 1.52993 * 115.55069 * 39.75310 * 3 2 1 5 5 C 1.53004 * 109.47148 * 91.55040 * 4 3 2 6 6 C 1.53004 * 109.47256 * 211.55117 * 4 3 2 7 7 C 1.53004 * 117.51694 * 254.05442 * 3 2 1 8 8 C 1.52998 * 117.49798 * 185.42496 * 3 2 1 9 9 H 1.09002 * 117.49917 * 0.02562 * 8 3 2 10 10 N 1.46499 * 117.50197 * 215.02266 * 8 3 2 11 11 C 1.34771 * 120.00404 * 155.02471 * 10 8 3 12 12 O 1.21279 * 120.00089 * 0.02562 * 11 10 8 13 13 C 1.50696 * 120.00217 * 180.02562 * 11 10 8 14 14 C 1.52999 * 109.47417 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47499 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99659 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00150 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00225 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00309 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47086 * 89.99701 * 19 17 15 21 21 H 1.48498 * 109.47354 * 210.00143 * 19 17 15 22 22 H 1.48502 * 109.46779 * 330.00151 * 19 17 15 23 23 H 1.09001 * 109.46862 * 172.37110 * 1 2 3 24 24 H 1.09001 * 109.47106 * 292.37077 * 1 2 3 25 25 H 1.08999 * 109.46971 * 52.37529 * 1 2 3 26 26 H 1.09004 * 109.47282 * 239.99521 * 2 1 3 27 27 H 1.09002 * 109.47080 * 119.99861 * 2 1 3 28 28 H 1.09001 * 109.47206 * 331.55380 * 4 3 2 29 29 H 1.09002 * 109.47130 * 56.87861 * 5 4 3 30 30 H 1.08995 * 109.47062 * 176.87594 * 5 4 3 31 31 H 1.08999 * 109.46857 * 296.87974 * 5 4 3 32 32 H 1.08999 * 109.46845 * 308.60599 * 6 4 3 33 33 H 1.08994 * 109.46894 * 68.60530 * 6 4 3 34 34 H 1.08999 * 109.46820 * 188.60685 * 6 4 3 35 35 H 1.08998 * 117.49850 * 145.02810 * 7 3 2 36 36 H 1.09001 * 117.49584 * 0.02562 * 7 3 2 37 37 H 0.97005 * 119.99738 * 335.03747 * 10 8 3 38 38 H 1.09004 * 109.47443 * 300.00688 * 13 11 10 39 39 H 1.08998 * 109.47129 * 60.00652 * 13 11 10 40 40 H 1.09004 * 109.46754 * 300.00348 * 14 13 11 41 41 H 1.08998 * 109.47061 * 59.99848 * 14 13 11 42 42 H 0.97000 * 120.00221 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.2595 2.4183 0.8827 5 6 1.8926 2.4652 2.2748 6 6 1.2982 3.8143 0.2576 7 6 2.6271 1.9847 -1.3047 8 6 3.5493 1.6581 -0.1283 9 1 4.1788 0.7723 -0.2131 10 7 4.1366 2.7830 0.6038 11 6 5.4375 2.7531 0.9547 12 8 6.1221 1.7951 0.6640 13 6 6.0414 3.9099 1.7083 14 6 7.5200 3.6254 1.9801 15 6 8.1238 4.7820 2.7342 16 1 7.5140 5.6349 2.9934 17 6 9.4546 4.7513 3.0933 18 7 9.9817 5.7609 3.7510 19 14 10.5091 3.2759 2.6456 20 1 11.1297 3.4965 1.3147 21 1 11.5741 3.1009 3.6656 22 1 9.6617 2.0572 2.6007 23 1 -0.3633 -1.0186 -0.1364 24 1 -0.3633 0.3911 0.9503 25 1 -0.3633 0.6274 -0.8139 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.2248 2.0857 0.9652 29 1 2.9427 2.7441 2.1872 30 1 1.3710 3.2011 2.8866 31 1 1.8153 1.4835 2.7423 32 1 2.3305 4.0839 0.0344 33 1 0.7149 3.8164 -0.6631 34 1 0.8768 4.5371 0.9563 35 1 2.4573 3.0366 -1.5342 36 1 2.6497 1.3138 -2.1635 37 1 3.5890 3.5492 0.8362 38 1 5.9500 4.8186 1.1134 39 1 5.5165 4.0408 2.6546 40 1 7.6117 2.7166 2.5749 41 1 8.0447 3.4947 1.0337 42 1 10.9179 5.7392 4.0040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457245403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:02 Heat of formation + Delta-G solvation = -46.409187 kcal Electronic energy + Delta-G solvation = -19245.284637 eV Core-core repulsion = 16417.939218 eV Total energy + Delta-G solvation = -2827.345420 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50630 -39.72839 -35.57348 -34.91587 -33.96031 -33.32669 -32.24110 -28.27934 -27.99361 -24.89772 -23.89373 -23.26464 -22.22487 -21.46115 -19.54047 -18.95619 -17.74833 -17.08719 -16.54768 -16.32525 -15.92238 -15.66056 -15.10741 -14.91771 -14.65888 -14.46697 -14.16425 -13.86212 -13.68742 -13.41751 -13.12442 -12.93492 -12.86663 -12.57146 -12.16927 -12.11568 -12.01281 -11.98597 -11.87586 -11.78414 -11.52383 -11.41044 -11.24005 -10.88424 -10.78685 -10.58176 -9.50733 -8.32176 -6.35138 1.32678 1.34526 1.49799 1.59912 2.13114 2.34498 2.86217 3.03446 3.68276 3.77717 3.85573 3.87754 3.96023 4.28519 4.34583 4.36433 4.45838 4.54278 4.58050 4.62642 4.74901 4.78961 4.86126 4.87468 4.99513 5.05436 5.08577 5.10231 5.21334 5.28544 5.31567 5.33271 5.42421 5.42727 5.45811 5.57009 5.59053 5.61887 6.22566 6.52551 6.70969 7.27424 7.30329 8.83468 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.037378 B = 0.004334 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.928605 B = 6458.577095 C = 6785.616868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.108 4.108 4 C -0.063 4.063 5 C -0.166 4.166 6 C -0.158 4.158 7 C -0.176 4.176 8 C 0.059 3.941 9 H 0.109 0.891 10 N -0.689 5.689 11 C 0.514 3.486 12 O -0.584 6.584 13 C -0.118 4.118 14 C 0.006 3.994 15 C -0.529 4.529 16 H 0.051 0.949 17 C 0.014 3.986 18 N -0.943 5.943 19 Si 0.938 3.062 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.263 1.263 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.415 0.585 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.010 0.990 41 H 0.009 0.991 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.694 -8.409 -9.035 26.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 C -0.110 4.110 4 C -0.081 4.081 5 C -0.224 4.224 6 C -0.216 4.216 7 C -0.214 4.214 8 C -0.047 4.047 9 H 0.127 0.873 10 N -0.344 5.344 11 C 0.302 3.698 12 O -0.464 6.464 13 C -0.158 4.158 14 C -0.032 4.032 15 C -0.567 4.567 16 H 0.069 0.931 17 C -0.183 4.183 18 N -0.583 5.583 19 Si 0.763 3.237 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.187 1.187 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.258 0.742 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.045 -8.994 -9.149 26.375 hybrid contribution 0.876 -0.075 0.169 0.895 sum -22.169 -9.069 -8.980 25.580 Atomic orbital electron populations 1.21750 0.94007 1.02106 1.02288 1.21085 0.97130 0.92402 1.01936 1.22159 0.92466 0.97428 0.98901 1.20756 1.00036 0.94001 0.93332 1.22170 1.01611 1.01979 0.96603 1.22152 1.01422 0.96085 1.01899 1.23908 1.01685 1.03545 0.92255 1.21711 0.91674 0.91880 0.99469 0.87314 1.45859 1.09720 1.21777 1.57041 1.21242 0.81895 0.88267 0.78359 1.90622 1.62046 1.37055 1.56694 1.21521 0.97099 0.96161 1.00988 1.19210 0.92768 0.95492 0.95717 1.21416 0.95695 1.04046 1.35563 0.93095 1.25789 0.99416 0.98578 0.94548 1.70020 1.14272 1.32944 1.41105 0.85834 0.78671 0.80735 0.78508 1.19333 1.20240 1.18721 0.92111 0.92112 0.91931 0.91456 0.92395 0.88460 0.92685 0.91486 0.93235 0.93320 0.90989 0.91236 0.86977 0.87386 0.74238 0.87931 0.88013 0.97201 0.97286 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.89 71.98 0.64 -1.01 16 2 C -0.09 -1.34 6.07 30.59 0.19 -1.16 16 3 C -0.11 -1.85 1.90 -52.18 -0.10 -1.95 16 4 C -0.06 -0.93 2.72 -10.79 -0.03 -0.96 16 5 C -0.17 -2.98 8.86 71.98 0.64 -2.34 16 6 C -0.16 -2.07 7.56 71.98 0.54 -1.52 16 7 C -0.18 -3.07 9.13 30.60 0.28 -2.79 16 8 C 0.06 1.42 5.89 44.99 0.26 1.68 16 9 H 0.11 3.20 7.40 -2.39 -0.02 3.18 16 10 N -0.69 -18.51 3.44 -442.54 -1.52 -20.03 16 11 C 0.51 18.92 7.83 87.66 0.69 19.60 16 12 O -0.58 -26.59 15.55 -3.03 -0.05 -26.63 16 13 C -0.12 -4.58 5.64 29.85 0.17 -4.41 16 14 C 0.01 0.31 3.33 29.85 0.10 0.41 16 15 C -0.53 -30.86 9.66 25.60 0.25 -30.61 16 16 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 17 C 0.01 0.87 5.47 84.65 0.46 1.33 16 18 N -0.94 -59.37 13.96 21.45 0.30 -59.07 16 19 Si 0.94 47.27 27.47 68.60 1.88 49.16 16 20 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 22 H -0.26 -13.24 6.54 99.48 0.65 -12.59 16 23 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 0.66 6.73 -2.39 -0.02 0.65 16 25 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 26 H 0.07 0.99 7.95 -2.38 -0.02 0.98 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 1.20 5.60 -2.39 -0.01 1.19 16 29 H 0.05 1.19 4.66 -2.39 -0.01 1.18 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 0.72 4.35 -2.39 -0.01 0.71 16 33 H 0.07 0.79 7.81 -2.39 -0.02 0.77 16 34 H 0.07 0.80 8.13 -2.39 -0.02 0.78 16 35 H 0.11 1.77 5.83 -2.39 -0.01 1.76 16 36 H 0.11 1.68 8.08 -2.39 -0.02 1.66 16 37 H 0.41 9.04 4.23 -92.70 -0.39 8.65 16 38 H 0.10 3.61 8.14 -2.38 -0.02 3.59 16 39 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 40 H 0.01 0.51 7.15 -2.38 -0.02 0.50 16 41 H 0.01 0.46 7.53 -2.39 -0.02 0.44 16 42 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -71.35 322.85 5.25 -66.10 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.55 Total: 14.21 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 4.09 Total: -23.73 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -1.22 Total: -79.10 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.63 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.88 Total: 49.16 kcal Total: -71.35 5.25 -66.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457245403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.688 kcal (2) G-P(sol) polarization free energy of solvation -71.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds