Wall clock time and date at job start Mon Mar 30 2020 00:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47254 * 2 1 4 4 C 1.53007 * 115.54788 * 325.66528 * 3 2 1 5 5 C 1.53070 * 117.49633 * 111.39375 * 3 2 1 6 6 C 1.52996 * 117.49969 * 179.97438 * 3 2 1 7 7 H 1.09002 * 117.50011 * 0.02562 * 6 3 2 8 8 C 1.50703 * 117.50109 * 145.01655 * 6 3 2 9 9 O 1.21279 * 119.99620 * 359.91515 * 8 6 3 10 10 N 1.34771 * 120.00343 * 179.90987 * 8 6 3 11 11 C 1.46499 * 120.00531 * 179.97438 * 10 8 6 12 12 C 1.50701 * 109.47260 * 270.00758 * 11 10 8 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27562 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 C 1.46505 * 119.99877 * 0.02562 * 10 8 6 21 21 C 1.52997 * 109.47374 * 119.99746 * 20 10 8 22 22 C 1.52997 * 109.46958 * 239.99856 * 20 10 8 23 23 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47529 * 300.00589 * 1 2 3 25 25 H 1.08997 * 109.46622 * 60.00368 * 1 2 3 26 26 H 1.08996 * 109.47529 * 239.99411 * 2 1 3 27 27 H 1.09004 * 109.47017 * 119.99680 * 2 1 3 28 28 H 1.09006 * 109.47063 * 274.33259 * 4 3 2 29 29 H 1.09000 * 109.47014 * 34.33039 * 4 3 2 30 30 H 1.08993 * 109.47055 * 154.33252 * 4 3 2 31 31 H 1.08997 * 117.49627 * 0.02562 * 5 3 2 32 32 H 1.08997 * 117.51382 * 214.96243 * 5 3 2 33 33 H 1.09000 * 109.47197 * 149.99763 * 11 10 8 34 34 H 1.09007 * 109.46342 * 30.00336 * 11 10 8 35 35 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47153 * 359.97438 * 20 10 8 37 37 H 1.09002 * 109.47157 * 59.99786 * 21 20 10 38 38 H 1.09002 * 109.47063 * 179.97438 * 21 20 10 39 39 H 1.09003 * 109.46939 * 300.00109 * 21 20 10 40 40 H 1.08999 * 109.47356 * 60.00003 * 22 20 10 41 41 H 1.09002 * 109.47186 * 179.97438 * 22 20 10 42 42 H 1.09002 * 109.46922 * 299.99816 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.1853 2.4446 -0.7786 5 6 2.7426 1.9436 1.2642 6 6 3.5550 1.6561 0.0006 7 1 4.1884 0.7690 0.0006 8 6 4.0915 2.8376 -0.7657 9 8 3.3295 3.5755 -1.3539 10 7 5.4179 3.0744 -0.7975 11 6 5.9394 4.2227 -1.5429 12 6 6.2346 3.8086 -2.9615 13 1 6.0522 2.7917 -3.2762 14 6 6.7431 4.7264 -3.8558 15 7 6.9654 5.9647 -3.4725 16 14 7.1163 4.2112 -5.6122 17 1 6.7809 2.7755 -5.7887 18 1 6.3057 5.0283 -6.5506 19 1 8.5593 4.4202 -5.8935 20 6 6.3383 2.1829 -0.0873 21 6 7.3189 1.5627 -1.0847 22 6 7.1145 2.9817 0.9615 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.4778 2.4330 -1.8286 29 1 0.1340 2.1704 -0.6913 30 1 1.3352 3.4441 -0.3707 31 1 2.8416 1.2454 2.0953 32 1 2.5959 2.9875 1.5416 33 1 6.8551 4.5774 -1.0698 34 1 5.1981 5.0219 -1.5444 35 1 7.3236 6.6103 -4.1016 36 1 5.7714 1.3924 0.4046 37 1 7.8857 2.3534 -1.5764 38 1 8.0040 0.8997 -0.5562 39 1 6.7658 0.9936 -1.8320 40 1 6.4160 3.4234 1.6721 41 1 7.7990 2.3182 1.4902 42 1 7.6814 3.7723 0.4699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576878216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:18 Heat of formation + Delta-G solvation = -23.933268 kcal Electronic energy + Delta-G solvation = -19852.917486 eV Core-core repulsion = 17026.546696 eV Total energy + Delta-G solvation = -2826.370791 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.81934 -37.45675 -35.66825 -32.81948 -32.06847 -30.76352 -28.08635 -27.28950 -26.68009 -24.27424 -23.67194 -22.11605 -20.98611 -18.87269 -17.54574 -16.83551 -16.39113 -15.09288 -14.92119 -14.53533 -14.32765 -14.03264 -13.48275 -13.30909 -12.99111 -12.55952 -12.34018 -12.16136 -12.13494 -12.04457 -11.61032 -11.53411 -11.44585 -11.17969 -11.03427 -10.89267 -10.79359 -10.70684 -10.56016 -10.30989 -9.94214 -9.82400 -9.47460 -9.40857 -8.57396 -8.38796 -7.55745 -5.99844 -4.02773 3.26288 3.31334 3.39368 3.43582 3.92298 4.13644 4.48051 4.78210 4.87501 5.03677 5.15664 5.29789 5.33625 5.35489 5.45938 5.54933 5.64943 5.70021 5.71769 5.84528 5.92242 6.02077 6.05753 6.11802 6.16622 6.22979 6.29333 6.32837 6.36141 6.41150 6.48613 6.65361 6.90489 7.00455 7.18802 7.52445 7.65894 7.97867 8.30379 8.55145 8.97424 9.22276 9.61553 11.08266 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.006414 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.138775 B = 4364.267831 C = 4948.824887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.094 4.094 4 C -0.106 4.106 5 C -0.151 4.151 6 C -0.183 4.183 7 H 0.115 0.885 8 C 0.534 3.466 9 O -0.537 6.537 10 N -0.590 5.590 11 C 0.246 3.754 12 C -0.515 4.515 13 H 0.058 0.942 14 C 0.059 3.941 15 N -0.896 5.896 16 Si 0.894 3.106 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.133 3.867 21 C -0.157 4.157 22 C -0.161 4.161 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.033 0.967 34 H 0.040 0.960 35 H 0.261 0.739 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.718 -11.338 10.232 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 C -0.095 4.095 4 C -0.162 4.162 5 C -0.189 4.189 6 C -0.204 4.204 7 H 0.133 0.867 8 C 0.320 3.680 9 O -0.415 6.415 10 N -0.321 5.321 11 C 0.127 3.873 12 C -0.554 4.554 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.536 5.536 16 Si 0.722 3.278 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.211 1.211 20 C 0.029 3.971 21 C -0.215 4.215 22 C -0.219 4.219 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.025 -10.744 9.840 15.766 hybrid contribution 0.587 -0.274 -1.005 1.196 sum -5.438 -11.018 8.835 15.134 Atomic orbital electron populations 1.21819 0.95540 1.01058 1.02289 1.21069 0.96022 0.93497 1.01753 1.21545 0.91775 0.96521 0.99618 1.21428 0.96621 0.97323 1.00856 1.23131 1.02769 1.02380 0.90607 1.22477 0.95196 1.00176 1.02570 0.86689 1.19390 0.82589 0.85022 0.80979 1.90656 1.56396 1.48984 1.45448 1.48268 1.04727 1.29188 1.49933 1.19222 0.94671 0.83142 0.90263 1.21484 1.41864 0.96757 0.95333 0.92388 1.24922 0.95849 0.94816 0.98624 1.69942 1.45317 1.03005 1.35324 0.86508 0.77705 0.78692 0.84919 1.19858 1.20978 1.21071 1.20997 0.91430 0.92097 0.92590 1.22151 0.99102 1.01308 0.98981 1.22146 1.00232 1.00979 0.98502 0.93110 0.92658 0.91923 0.91611 0.92018 0.91297 0.93209 0.91803 0.88591 0.88583 0.94890 0.94163 0.92911 0.90593 0.90138 0.93385 0.92825 0.92961 0.92422 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.92 37.16 0.33 -1.15 16 2 C -0.09 -0.97 6.12 -26.73 -0.16 -1.14 16 3 C -0.09 -1.34 2.47 -154.47 -0.38 -1.72 16 4 C -0.11 -1.68 7.74 37.16 0.29 -1.39 16 5 C -0.15 -2.02 9.53 -26.72 -0.25 -2.28 16 6 C -0.18 -2.91 4.72 -91.80 -0.43 -3.35 16 7 H 0.12 1.63 6.65 -51.93 -0.35 1.28 16 8 C 0.53 11.33 7.44 -10.99 -0.08 11.24 16 9 O -0.54 -13.38 12.69 5.56 0.07 -13.31 16 10 N -0.59 -12.64 2.39 -167.47 -0.40 -13.04 16 11 C 0.25 6.43 4.59 -5.19 -0.02 6.40 16 12 C -0.52 -14.48 7.83 -34.44 -0.27 -14.75 16 13 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 16 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.13 2.25 3.16 -67.93 -0.21 2.04 16 21 C -0.16 -2.68 8.47 37.16 0.31 -2.36 16 22 C -0.16 -2.44 9.17 37.16 0.34 -2.10 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.65 6.45 -51.93 -0.33 0.32 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.61 7.90 -51.93 -0.41 0.20 16 28 H 0.07 1.28 7.26 -51.93 -0.38 0.90 16 29 H 0.05 0.66 5.58 -51.93 -0.29 0.37 16 30 H 0.06 1.13 7.02 -51.93 -0.36 0.76 16 31 H 0.10 1.02 8.05 -51.93 -0.42 0.61 16 32 H 0.10 1.38 8.05 -51.93 -0.42 0.96 16 33 H 0.03 0.87 6.43 -51.93 -0.33 0.54 16 34 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.08 1.10 5.43 -51.93 -0.28 0.82 16 37 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.16 6.66 -51.93 -0.35 0.82 16 LS Contribution 327.58 15.07 4.94 4.94 Total: -1.00 -31.45 327.58 -7.48 -38.93 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.16 Total: 0.40 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -0.65 Total: -8.95 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.34 Total: -39.02 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.07 Total: -13.31 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.45 -7.48 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576878216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.001 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds