Wall clock time and date at job start Mon Mar 30 2020 00:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47254 * 2 1 4 4 C 1.53007 * 115.54788 * 325.66528 * 3 2 1 5 5 C 1.53070 * 117.49633 * 111.39375 * 3 2 1 6 6 C 1.52996 * 117.49969 * 179.97438 * 3 2 1 7 7 H 1.09002 * 117.50011 * 0.02562 * 6 3 2 8 8 C 1.50703 * 117.50109 * 145.01655 * 6 3 2 9 9 O 1.21279 * 119.99620 * 359.91515 * 8 6 3 10 10 N 1.34771 * 120.00343 * 179.90987 * 8 6 3 11 11 C 1.46499 * 120.00531 * 179.97438 * 10 8 6 12 12 C 1.50701 * 109.47260 * 270.00758 * 11 10 8 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27562 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 C 1.46505 * 119.99877 * 0.02562 * 10 8 6 21 21 C 1.52997 * 109.47374 * 119.99746 * 20 10 8 22 22 C 1.52997 * 109.46958 * 239.99856 * 20 10 8 23 23 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47529 * 300.00589 * 1 2 3 25 25 H 1.08997 * 109.46622 * 60.00368 * 1 2 3 26 26 H 1.08996 * 109.47529 * 239.99411 * 2 1 3 27 27 H 1.09004 * 109.47017 * 119.99680 * 2 1 3 28 28 H 1.09006 * 109.47063 * 274.33259 * 4 3 2 29 29 H 1.09000 * 109.47014 * 34.33039 * 4 3 2 30 30 H 1.08993 * 109.47055 * 154.33252 * 4 3 2 31 31 H 1.08997 * 117.49627 * 0.02562 * 5 3 2 32 32 H 1.08997 * 117.51382 * 214.96243 * 5 3 2 33 33 H 1.09000 * 109.47197 * 149.99763 * 11 10 8 34 34 H 1.09007 * 109.46342 * 30.00336 * 11 10 8 35 35 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47153 * 359.97438 * 20 10 8 37 37 H 1.09002 * 109.47157 * 59.99786 * 21 20 10 38 38 H 1.09002 * 109.47063 * 179.97438 * 21 20 10 39 39 H 1.09003 * 109.46939 * 300.00109 * 21 20 10 40 40 H 1.08999 * 109.47356 * 60.00003 * 22 20 10 41 41 H 1.09002 * 109.47186 * 179.97438 * 22 20 10 42 42 H 1.09002 * 109.46922 * 299.99816 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.1853 2.4446 -0.7786 5 6 2.7426 1.9436 1.2642 6 6 3.5550 1.6561 0.0006 7 1 4.1884 0.7690 0.0006 8 6 4.0915 2.8376 -0.7657 9 8 3.3295 3.5755 -1.3539 10 7 5.4179 3.0744 -0.7975 11 6 5.9394 4.2227 -1.5429 12 6 6.2346 3.8086 -2.9615 13 1 6.0522 2.7917 -3.2762 14 6 6.7431 4.7264 -3.8558 15 7 6.9654 5.9647 -3.4725 16 14 7.1163 4.2112 -5.6122 17 1 6.7809 2.7755 -5.7887 18 1 6.3057 5.0283 -6.5506 19 1 8.5593 4.4202 -5.8935 20 6 6.3383 2.1829 -0.0873 21 6 7.3189 1.5627 -1.0847 22 6 7.1145 2.9817 0.9615 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.4778 2.4330 -1.8286 29 1 0.1340 2.1704 -0.6913 30 1 1.3352 3.4441 -0.3707 31 1 2.8416 1.2454 2.0953 32 1 2.5959 2.9875 1.5416 33 1 6.8551 4.5774 -1.0698 34 1 5.1981 5.0219 -1.5444 35 1 7.3236 6.6103 -4.1016 36 1 5.7714 1.3924 0.4046 37 1 7.8857 2.3534 -1.5764 38 1 8.0040 0.8997 -0.5562 39 1 6.7658 0.9936 -1.8320 40 1 6.4160 3.4234 1.6721 41 1 7.7990 2.3182 1.4902 42 1 7.6814 3.7723 0.4699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576878216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:17 Heat of formation + Delta-G solvation = -42.230303 kcal Electronic energy + Delta-G solvation = -19853.710905 eV Core-core repulsion = 17026.546696 eV Total energy + Delta-G solvation = -2827.164210 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.29486 -38.82018 -37.28216 -34.93734 -33.05730 -32.40387 -29.77977 -28.83625 -27.99768 -25.96643 -24.64452 -23.81199 -22.44383 -20.08631 -19.00872 -18.61610 -18.28958 -16.86672 -16.22384 -16.13290 -15.62074 -15.42680 -14.84428 -14.81338 -14.39936 -14.13459 -13.79568 -13.56646 -13.43926 -13.24301 -13.18281 -12.97826 -12.84195 -12.75461 -12.58837 -12.52741 -12.22778 -12.09782 -11.99883 -11.68581 -11.55725 -11.50355 -10.96580 -10.64117 -10.58904 -10.20797 -9.37155 -8.20374 -6.32510 1.33390 1.35748 1.47207 1.75878 2.30502 2.43958 2.88109 3.08808 3.59985 3.71382 3.89499 4.00946 4.14143 4.22033 4.32224 4.40799 4.50404 4.59961 4.78513 4.83287 4.86179 4.87733 4.94843 4.97431 5.01695 5.04732 5.08653 5.12218 5.17026 5.23964 5.24653 5.37383 5.43035 5.46973 5.56694 5.63210 5.66175 5.92853 6.11320 6.74436 6.89336 7.31800 7.57869 8.86965 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.006414 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.138775 B = 4364.267831 C = 4948.824887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 C -0.096 4.096 4 C -0.101 4.101 5 C -0.126 4.126 6 C -0.195 4.195 7 H 0.143 0.857 8 C 0.519 3.481 9 O -0.589 6.589 10 N -0.596 5.596 11 C 0.265 3.735 12 C -0.523 4.523 13 H 0.051 0.949 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.961 3.039 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.269 1.269 20 C 0.126 3.874 21 C -0.152 4.152 22 C -0.154 4.154 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.032 0.968 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.140 0.860 32 H 0.079 0.921 33 H 0.024 0.976 34 H -0.011 1.011 35 H 0.265 0.735 36 H 0.114 0.886 37 H 0.042 0.958 38 H 0.090 0.910 39 H 0.041 0.959 40 H 0.054 0.946 41 H 0.097 0.903 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.680 -14.656 11.778 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.096 4.096 4 C -0.158 4.158 5 C -0.164 4.164 6 C -0.216 4.216 7 H 0.161 0.839 8 C 0.308 3.692 9 O -0.471 6.471 10 N -0.327 5.327 11 C 0.144 3.856 12 C -0.562 4.562 13 H 0.069 0.931 14 C -0.193 4.193 15 N -0.572 5.572 16 Si 0.786 3.214 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.195 1.195 20 C 0.023 3.977 21 C -0.210 4.210 22 C -0.212 4.212 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.158 0.842 32 H 0.098 0.902 33 H 0.042 0.958 34 H 0.007 0.993 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.061 0.939 38 H 0.109 0.891 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.967 -14.096 11.416 19.095 hybrid contribution 0.542 0.800 -1.454 1.746 sum -5.424 -13.296 9.961 17.477 Atomic orbital electron populations 1.21814 0.94619 1.02261 1.01998 1.21100 0.96786 0.90980 1.02895 1.21709 0.90099 0.98019 0.99820 1.21317 0.98856 0.96805 0.98793 1.23263 0.99768 1.02616 0.90712 1.22406 0.96604 0.98442 1.04111 0.83930 1.20449 0.82022 0.86037 0.80643 1.90633 1.57592 1.51185 1.47661 1.48327 1.05956 1.28595 1.49798 1.18615 0.92599 0.83919 0.90474 1.21666 1.41644 0.96411 0.96431 0.93062 1.25805 0.95656 0.94782 1.03029 1.70061 1.46091 1.04095 1.36918 0.85456 0.78126 0.78383 0.79400 1.19235 1.20956 1.19466 1.21406 0.91240 0.92361 0.92661 1.22087 0.99283 1.00610 0.98983 1.22101 1.00449 1.00695 0.97973 0.91195 0.92035 0.93152 0.91979 0.89305 0.94889 0.90483 0.94640 0.84213 0.90201 0.95847 0.99268 0.92623 0.86801 0.93897 0.89107 0.94022 0.92651 0.88437 0.94504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.92 71.98 0.64 -1.84 16 2 C -0.08 -1.52 6.12 30.59 0.19 -1.33 16 3 C -0.10 -2.54 2.47 -52.16 -0.13 -2.67 16 4 C -0.10 -3.29 7.74 71.98 0.56 -2.73 16 5 C -0.13 -2.98 9.53 30.60 0.29 -2.69 16 6 C -0.19 -5.83 4.72 -11.56 -0.05 -5.88 16 7 H 0.14 3.46 6.65 -2.39 -0.02 3.44 16 8 C 0.52 22.62 7.44 87.66 0.65 23.27 16 9 O -0.59 -31.33 12.69 -3.03 -0.04 -31.37 16 10 N -0.60 -26.23 2.39 -802.13 -1.91 -28.15 16 11 C 0.27 14.71 4.59 85.63 0.39 15.10 16 12 C -0.52 -30.62 7.83 25.60 0.20 -30.42 16 13 H 0.05 3.00 7.62 -2.91 -0.02 2.98 16 14 C 0.01 0.32 5.46 84.65 0.46 0.78 16 15 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 16 Si 0.96 46.13 29.54 68.60 2.03 48.16 16 17 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 20 C 0.13 4.05 3.16 44.99 0.14 4.20 16 21 C -0.15 -4.95 8.47 71.98 0.61 -4.34 16 22 C -0.15 -4.44 9.17 71.98 0.66 -3.78 16 23 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 0.95 6.45 -2.39 -0.02 0.93 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 1.25 7.90 -2.39 -0.02 1.23 16 28 H 0.03 1.28 7.26 -2.38 -0.02 1.27 16 29 H 0.08 2.01 5.58 -2.39 -0.01 2.00 16 30 H 0.03 1.32 7.02 -2.39 -0.02 1.30 16 31 H 0.14 2.15 8.05 -2.39 -0.02 2.13 16 32 H 0.08 2.18 8.05 -2.39 -0.02 2.16 16 33 H 0.02 1.33 6.43 -2.39 -0.02 1.31 16 34 H -0.01 -0.70 7.42 -2.38 -0.02 -0.72 16 35 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.11 2.84 5.43 -2.39 -0.01 2.83 16 37 H 0.04 1.71 6.92 -2.39 -0.02 1.70 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 1.27 6.66 -2.39 -0.02 1.26 16 Total: -1.00 -74.55 327.58 5.95 -68.60 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.98 Total: 12.43 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 4.61 Total: -12.34 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -1.63 Total: -85.48 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.04 Total: -31.37 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -74.55 5.95 -68.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576878216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.373 kcal (2) G-P(sol) polarization free energy of solvation -74.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds