Wall clock time and date at job start Sun Mar 29 2020 23:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 115.54979 * 2 1 4 4 C 1.52996 * 109.47301 * 34.32873 * 3 2 1 5 5 N 1.46498 * 109.47059 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 3 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47353 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47600 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47646 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99463 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00445 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00126 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99943 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47483 * 89.99798 * 16 14 12 18 18 H 1.48499 * 109.47134 * 210.00313 * 16 14 12 19 19 H 1.48507 * 109.46904 * 330.00135 * 16 14 12 20 20 C 1.52995 * 117.52006 * 145.70111 * 2 1 3 21 21 C 1.52999 * 60.00297 * 107.48049 * 20 2 1 22 22 H 1.09008 * 109.47214 * 85.58175 * 1 2 3 23 23 H 1.09000 * 109.47436 * 205.58203 * 1 2 3 24 24 H 1.09004 * 109.47181 * 325.58556 * 1 2 3 25 25 H 1.09004 * 109.47038 * 274.32883 * 3 2 1 26 26 H 1.09000 * 109.46939 * 154.33536 * 3 2 1 27 27 H 1.09004 * 109.47066 * 60.00027 * 4 3 2 28 28 H 1.08994 * 109.46974 * 300.00175 * 4 3 2 29 29 H 0.97001 * 120.00384 * 0.02562 * 5 4 3 30 30 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 31 31 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 32 32 H 1.08998 * 109.47508 * 300.00200 * 9 8 6 33 33 H 1.09011 * 109.47182 * 60.00188 * 9 8 6 34 34 H 1.08999 * 109.47616 * 300.00389 * 10 9 8 35 35 H 1.09003 * 109.47280 * 60.00024 * 10 9 8 36 36 H 1.08998 * 109.47382 * 300.00476 * 11 10 9 37 37 H 1.09005 * 109.46800 * 60.00677 * 11 10 9 38 38 H 0.97005 * 120.00032 * 179.97438 * 15 14 12 39 39 H 1.08991 * 117.50056 * 214.97323 * 20 2 1 40 40 H 1.09007 * 117.49857 * 359.97438 * 20 2 1 41 41 H 1.08994 * 117.50120 * 252.51479 * 21 20 2 42 42 H 1.08996 * 117.50185 * 107.48658 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.3351 2.3543 0.8135 5 7 1.9673 3.6759 0.8139 6 6 1.3856 4.7009 1.4676 7 8 0.3413 4.5281 2.0597 8 6 2.0326 6.0620 1.4629 9 6 1.1754 7.0370 2.2722 10 6 1.8326 8.4186 2.2680 11 6 0.9757 9.3936 3.0779 12 6 1.6228 10.7547 3.0732 13 1 2.5525 10.9087 2.5457 14 6 1.0285 11.8029 3.7432 15 7 1.5929 12.9907 3.7387 16 14 -0.5785 11.5359 4.6574 17 1 -0.2906 11.1304 6.0567 18 1 -1.3626 12.7971 4.6589 19 1 -1.3599 10.4680 3.9834 20 6 2.2369 -1.1209 0.7646 21 6 2.2365 -1.1208 -0.7654 22 1 -0.3634 0.0792 -1.0247 23 1 -0.3634 -0.9269 0.4437 24 1 -0.3634 0.8478 0.5808 25 1 2.2766 1.7417 -1.0248 26 1 3.1823 1.3087 0.4451 27 1 1.2484 1.9931 1.8382 28 1 0.3428 2.4260 0.3683 29 1 2.8024 3.8143 0.3402 30 1 3.0247 5.9941 1.9092 31 1 2.1196 6.4194 0.4368 32 1 0.1831 7.1050 1.8263 33 1 1.0889 6.6794 3.2984 34 1 2.8248 8.3505 2.7142 35 1 1.9195 8.7765 1.2421 36 1 -0.0166 9.4620 2.6321 37 1 0.8893 9.0356 4.1038 38 1 1.1746 13.7283 4.2097 39 1 3.1720 -0.8750 1.2676 40 1 1.6120 -1.8585 1.2682 41 1 1.6112 -1.8582 -1.2686 42 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588165690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:36 Heat of formation + Delta-G solvation = -49.132118 kcal Electronic energy + Delta-G solvation = -17795.911366 eV Core-core repulsion = 14968.447871 eV Total energy + Delta-G solvation = -2827.463495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.82636 -38.74037 -35.32296 -34.78295 -32.57559 -31.12236 -29.85424 -28.40295 -26.01779 -23.77418 -22.82419 -21.86230 -20.40073 -19.99474 -19.11349 -16.85926 -16.55748 -16.29330 -16.03510 -15.58120 -15.12519 -14.43242 -14.13941 -13.94135 -13.64795 -13.30145 -12.65925 -12.62930 -12.49433 -12.34146 -12.02044 -11.95697 -11.72409 -11.70998 -11.53526 -11.08328 -10.70992 -10.55872 -10.51052 -10.02787 -9.93939 -9.78795 -9.62245 -9.38733 -9.16741 -9.09587 -8.47491 -5.98718 -3.96056 2.71343 3.07174 3.31794 3.36996 3.43857 3.50239 4.23517 4.29517 4.47171 4.51926 4.58058 4.80798 4.90431 5.00418 5.15646 5.22896 5.26864 5.32366 5.36508 5.39270 5.43611 5.48662 5.61808 5.69137 5.70626 5.73783 5.84012 5.91696 6.06288 6.18665 6.31521 6.45195 6.71388 6.85476 7.01913 7.40602 7.42150 7.53537 7.86845 8.24977 8.60335 9.06286 9.64743 11.14754 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.060814 B = 0.002642 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.309628 B =10594.317835 C =10894.833564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.125 4.125 3 C -0.093 4.093 4 C 0.118 3.882 5 N -0.740 5.740 6 C 0.511 3.489 7 O -0.538 6.538 8 C -0.139 4.139 9 C -0.106 4.106 10 C -0.103 4.103 11 C -0.016 4.016 12 C -0.519 4.519 13 H 0.071 0.929 14 C 0.064 3.936 15 N -0.906 5.906 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.264 1.264 20 C -0.175 4.175 21 C -0.175 4.175 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.399 0.601 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.016 0.984 37 H 0.011 0.989 38 H 0.262 0.738 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 -28.486 -9.749 30.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.125 4.125 3 C -0.131 4.131 4 C -0.005 4.005 5 N -0.393 5.393 6 C 0.299 3.701 7 O -0.414 6.414 8 C -0.179 4.179 9 C -0.144 4.144 10 C -0.140 4.140 11 C -0.053 4.053 12 C -0.557 4.557 13 H 0.089 0.911 14 C -0.137 4.137 15 N -0.546 5.546 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.189 1.189 20 C -0.212 4.212 21 C -0.212 4.212 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.569 -28.431 -9.242 29.936 hybrid contribution -0.298 -0.031 0.255 0.393 sum 1.271 -28.462 -8.987 29.874 Atomic orbital electron populations 1.21514 0.91793 1.02692 1.02285 1.21367 0.95067 0.90399 1.05694 1.21300 0.98636 0.92458 1.00694 1.21416 0.96711 0.81773 1.00624 1.46126 1.27486 1.10117 1.55612 1.21080 0.84942 0.86512 0.77599 1.90698 1.23193 1.84431 1.43086 1.21774 1.01102 0.91630 1.03391 1.21478 0.98635 0.94575 0.99737 1.21476 0.99225 0.92716 1.00600 1.19582 0.95760 0.94999 0.94990 1.21187 1.09357 0.92411 1.32705 0.91117 1.25047 0.97427 0.95093 0.96117 1.69924 1.39813 1.01066 1.43760 0.86768 0.84327 0.77624 0.80542 1.20329 1.21474 1.18888 1.23191 1.02444 1.01175 0.94363 1.23041 1.02420 1.01213 0.94525 0.92078 0.92364 0.91020 0.90839 0.91057 0.91524 0.91098 0.76702 0.89026 0.89009 0.91811 0.91827 0.92882 0.92848 0.96614 0.97055 0.92842 0.88774 0.88765 0.88750 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 9.49 37.16 0.35 -0.49 16 2 C -0.12 -0.81 2.47 -154.51 -0.38 -1.20 16 3 C -0.09 -0.60 5.52 -26.73 -0.15 -0.75 16 4 C 0.12 1.07 4.68 -4.04 -0.02 1.05 16 5 N -0.74 -7.16 5.56 -60.30 -0.33 -7.49 16 6 C 0.51 6.94 7.83 -10.98 -0.09 6.86 16 7 O -0.54 -9.64 15.98 5.55 0.09 -9.55 16 8 C -0.14 -1.78 5.70 -27.89 -0.16 -1.94 16 9 C -0.11 -1.82 4.50 -26.74 -0.12 -1.94 16 10 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 11 C -0.02 -0.40 4.04 -27.88 -0.11 -0.51 16 12 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 15 N -0.91 -28.57 13.96 55.43 0.77 -27.79 16 16 Si 0.88 22.54 27.47 -169.99 -4.67 17.88 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 20 C -0.17 -1.07 9.82 -26.73 -0.26 -1.33 16 21 C -0.18 -1.00 9.97 -26.73 -0.27 -1.27 16 22 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 23 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 24 H 0.07 0.54 5.59 -51.93 -0.29 0.25 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.42 7.90 -51.93 -0.41 0.01 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.71 6.45 -51.93 -0.33 0.37 16 29 H 0.40 2.65 8.47 -40.82 -0.35 2.31 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 33 H 0.06 1.15 8.10 -51.92 -0.42 0.73 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 37 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 38 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 39 H 0.09 0.55 8.05 -51.93 -0.42 0.13 16 40 H 0.09 0.54 8.05 -51.92 -0.42 0.13 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 340.98 15.07 5.14 5.14 Total: -1.00 -34.08 340.98 -8.40 -42.48 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -7.63 Total: -3.24 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -1.77 Total: -17.41 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.44 Total: -35.28 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.08 -8.40 -42.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.657 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds