Wall clock time and date at job start Sun Mar 29 2020 23:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 115.54979 * 2 1 4 4 C 1.52996 * 109.47301 * 34.32873 * 3 2 1 5 5 N 1.46498 * 109.47059 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 3 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47353 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47600 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47646 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99463 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00445 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00126 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99943 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47483 * 89.99798 * 16 14 12 18 18 H 1.48499 * 109.47134 * 210.00313 * 16 14 12 19 19 H 1.48507 * 109.46904 * 330.00135 * 16 14 12 20 20 C 1.52995 * 117.52006 * 145.70111 * 2 1 3 21 21 C 1.52999 * 60.00297 * 107.48049 * 20 2 1 22 22 H 1.09008 * 109.47214 * 85.58175 * 1 2 3 23 23 H 1.09000 * 109.47436 * 205.58203 * 1 2 3 24 24 H 1.09004 * 109.47181 * 325.58556 * 1 2 3 25 25 H 1.09004 * 109.47038 * 274.32883 * 3 2 1 26 26 H 1.09000 * 109.46939 * 154.33536 * 3 2 1 27 27 H 1.09004 * 109.47066 * 60.00027 * 4 3 2 28 28 H 1.08994 * 109.46974 * 300.00175 * 4 3 2 29 29 H 0.97001 * 120.00384 * 0.02562 * 5 4 3 30 30 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 31 31 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 32 32 H 1.08998 * 109.47508 * 300.00200 * 9 8 6 33 33 H 1.09011 * 109.47182 * 60.00188 * 9 8 6 34 34 H 1.08999 * 109.47616 * 300.00389 * 10 9 8 35 35 H 1.09003 * 109.47280 * 60.00024 * 10 9 8 36 36 H 1.08998 * 109.47382 * 300.00476 * 11 10 9 37 37 H 1.09005 * 109.46800 * 60.00677 * 11 10 9 38 38 H 0.97005 * 120.00032 * 179.97438 * 15 14 12 39 39 H 1.08991 * 117.50056 * 214.97323 * 20 2 1 40 40 H 1.09007 * 117.49857 * 359.97438 * 20 2 1 41 41 H 1.08994 * 117.50120 * 252.51479 * 21 20 2 42 42 H 1.08996 * 117.50185 * 107.48658 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.3351 2.3543 0.8135 5 7 1.9673 3.6759 0.8139 6 6 1.3856 4.7009 1.4676 7 8 0.3413 4.5281 2.0597 8 6 2.0326 6.0620 1.4629 9 6 1.1754 7.0370 2.2722 10 6 1.8326 8.4186 2.2680 11 6 0.9757 9.3936 3.0779 12 6 1.6228 10.7547 3.0732 13 1 2.5525 10.9087 2.5457 14 6 1.0285 11.8029 3.7432 15 7 1.5929 12.9907 3.7387 16 14 -0.5785 11.5359 4.6574 17 1 -0.2906 11.1304 6.0567 18 1 -1.3626 12.7971 4.6589 19 1 -1.3599 10.4680 3.9834 20 6 2.2369 -1.1209 0.7646 21 6 2.2365 -1.1208 -0.7654 22 1 -0.3634 0.0792 -1.0247 23 1 -0.3634 -0.9269 0.4437 24 1 -0.3634 0.8478 0.5808 25 1 2.2766 1.7417 -1.0248 26 1 3.1823 1.3087 0.4451 27 1 1.2484 1.9931 1.8382 28 1 0.3428 2.4260 0.3683 29 1 2.8024 3.8143 0.3402 30 1 3.0247 5.9941 1.9092 31 1 2.1196 6.4194 0.4368 32 1 0.1831 7.1050 1.8263 33 1 1.0889 6.6794 3.2984 34 1 2.8248 8.3505 2.7142 35 1 1.9195 8.7765 1.2421 36 1 -0.0166 9.4620 2.6321 37 1 0.8893 9.0356 4.1038 38 1 1.1746 13.7283 4.2097 39 1 3.1720 -0.8750 1.2676 40 1 1.6120 -1.8585 1.2682 41 1 1.6112 -1.8582 -1.2686 42 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588165690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:35 Heat of formation + Delta-G solvation = -70.569755 kcal Electronic energy + Delta-G solvation = -17796.840972 eV Core-core repulsion = 14968.447871 eV Total energy + Delta-G solvation = -2828.393100 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81057 -39.32286 -36.74349 -35.88999 -34.59517 -32.28339 -31.13449 -29.01164 -27.59997 -24.79773 -23.43373 -23.14015 -21.75361 -21.37259 -19.68753 -18.84992 -17.78381 -17.13965 -17.03319 -16.31237 -16.19584 -16.04845 -15.28108 -15.07735 -14.73220 -14.50583 -13.98902 -13.79579 -13.65515 -13.51216 -13.13270 -12.98358 -12.85955 -12.57571 -12.32975 -12.22659 -12.07414 -12.04168 -11.75178 -11.50996 -11.33916 -11.25878 -11.08684 -10.75892 -10.75011 -10.49086 -10.06475 -8.29430 -6.32385 1.34978 1.36410 1.49437 1.67481 2.22483 2.36176 2.84609 3.05861 3.70935 3.76862 3.89855 4.00878 4.03941 4.13149 4.16435 4.23623 4.42772 4.55939 4.65236 4.66438 4.78536 4.80869 4.85185 4.86793 4.90018 5.03975 5.06562 5.12727 5.15799 5.19256 5.21638 5.28602 5.28837 5.38090 5.51048 5.61624 5.66460 5.69182 6.29873 6.58709 6.75495 7.30205 7.32408 8.87067 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.060814 B = 0.002642 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.309628 B =10594.317835 C =10894.833564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.136 4.136 3 C -0.083 4.083 4 C 0.119 3.881 5 N -0.721 5.721 6 C 0.510 3.490 7 O -0.589 6.589 8 C -0.131 4.131 9 C -0.098 4.098 10 C -0.094 4.094 11 C -0.018 4.018 12 C -0.530 4.530 13 H 0.037 0.963 14 C 0.003 3.997 15 N -0.950 5.950 16 Si 0.948 3.052 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.253 1.253 20 C -0.180 4.180 21 C -0.167 4.167 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.417 0.583 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.013 0.987 37 H 0.012 0.988 38 H 0.266 0.734 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.587 -30.327 -10.401 32.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.137 4.137 3 C -0.120 4.120 4 C -0.004 4.004 5 N -0.374 5.374 6 C 0.298 3.702 7 O -0.470 6.470 8 C -0.171 4.171 9 C -0.136 4.136 10 C -0.131 4.131 11 C -0.055 4.055 12 C -0.568 4.568 13 H 0.056 0.944 14 C -0.194 4.194 15 N -0.591 5.591 16 Si 0.772 3.228 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.176 1.176 20 C -0.217 4.217 21 C -0.204 4.204 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.254 0.746 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.835 -30.303 -9.931 31.941 hybrid contribution -0.290 0.537 0.412 0.736 sum 1.545 -29.766 -9.519 31.289 Atomic orbital electron populations 1.21499 0.92279 1.02266 1.02261 1.21400 0.94854 0.90712 1.06734 1.21230 0.98406 0.91589 1.00795 1.21431 0.96931 0.81831 1.00212 1.45963 1.27687 1.09539 1.54197 1.21193 0.84328 0.87405 0.77299 1.90685 1.25481 1.85231 1.45563 1.21681 1.01023 0.90133 1.04231 1.21283 0.98601 0.93889 0.99867 1.21339 0.98689 0.93188 0.99907 1.19586 0.96126 0.93835 0.95976 1.21542 1.08460 0.94784 1.31980 0.94433 1.26002 1.01424 0.94740 0.97240 1.70062 1.41817 1.02146 1.45093 0.85688 0.79662 0.78064 0.79428 1.19231 1.20706 1.17642 1.23258 1.02545 1.00984 0.94865 1.23102 1.02581 1.00481 0.94264 0.91757 0.92087 0.92321 0.89723 0.89954 0.93041 0.92189 0.74561 0.86555 0.86525 0.93105 0.93069 0.92402 0.92404 0.96827 0.96934 0.92524 0.88406 0.88764 0.88358 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.49 71.98 0.68 -0.91 16 2 C -0.14 -1.56 2.47 -52.18 -0.13 -1.69 16 3 C -0.08 -0.88 5.52 30.59 0.17 -0.71 16 4 C 0.12 2.02 4.68 86.38 0.40 2.42 16 5 N -0.72 -12.34 5.56 -463.07 -2.57 -14.92 16 6 C 0.51 13.00 7.83 87.66 0.69 13.69 16 7 O -0.59 -20.96 15.98 -3.04 -0.05 -21.00 16 8 C -0.13 -3.01 5.70 29.85 0.17 -2.84 16 9 C -0.10 -3.23 4.50 30.59 0.14 -3.09 16 10 C -0.09 -3.62 5.15 30.59 0.16 -3.46 16 11 C -0.02 -0.87 4.04 29.85 0.12 -0.75 16 12 C -0.53 -31.42 9.66 25.60 0.25 -31.17 16 13 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 14 C 0.00 0.15 5.47 84.65 0.46 0.62 16 15 N -0.95 -60.80 13.96 21.44 0.30 -60.50 16 16 Si 0.95 46.31 27.47 68.60 1.88 48.20 16 17 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 19 H -0.25 -11.77 6.54 99.48 0.65 -11.11 16 20 C -0.18 -1.90 9.82 30.59 0.30 -1.59 16 21 C -0.17 -1.56 9.97 30.60 0.31 -1.25 16 22 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 23 H 0.06 0.71 7.90 -2.39 -0.02 0.69 16 24 H 0.06 0.89 5.59 -2.38 -0.01 0.87 16 25 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.08 0.72 7.90 -2.39 -0.02 0.70 16 27 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.06 1.17 6.45 -2.39 -0.02 1.16 16 29 H 0.42 4.15 8.47 -92.71 -0.79 3.37 16 30 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 33 H 0.05 1.80 8.10 -2.38 -0.02 1.78 16 34 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.01 0.66 7.20 -2.39 -0.02 0.65 16 37 H 0.01 0.60 7.57 -2.38 -0.02 0.58 16 38 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 39 H 0.10 0.95 8.05 -2.39 -0.02 0.93 16 40 H 0.09 0.98 8.05 -2.38 -0.02 0.96 16 41 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -74.46 340.98 3.41 -71.05 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.13 Total: 7.92 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: 3.72 Total: -30.75 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -2.27 Total: -75.41 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.05 Total: -21.00 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.88 Total: 48.20 kcal Total: -74.46 3.41 -71.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.483 kcal (2) G-P(sol) polarization free energy of solvation -74.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds