Wall clock time and date at job start Mon Mar 30 2020 00:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47163 * 2 1 4 4 C 1.53003 * 109.47259 * 240.00009 * 2 1 3 5 5 C 1.53009 * 109.47069 * 119.99747 * 2 1 3 6 6 C 1.52998 * 109.46769 * 60.00418 * 5 2 1 7 7 H 1.08999 * 115.55488 * 29.27566 * 6 5 2 8 8 C 1.53006 * 117.49469 * 243.60847 * 6 5 2 9 9 C 1.52997 * 117.51857 * 174.98178 * 6 5 2 10 10 H 1.09002 * 117.49910 * 359.97438 * 9 6 5 11 11 C 1.50699 * 117.50247 * 214.97039 * 9 6 5 12 12 O 1.21287 * 119.99816 * 359.97438 * 11 9 6 13 13 N 1.34774 * 120.00330 * 179.97438 * 11 9 6 14 14 C 1.46505 * 119.99973 * 179.97438 * 13 11 9 15 15 C 1.52994 * 109.46818 * 179.97438 * 14 13 11 16 16 C 1.50707 * 109.47006 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99851 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99949 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00200 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99753 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47268 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47505 * 119.99655 * 20 18 16 23 23 H 1.48498 * 109.46855 * 239.99589 * 20 18 16 24 24 H 1.09002 * 109.47425 * 300.00026 * 1 2 3 25 25 H 1.09002 * 109.47196 * 60.00124 * 1 2 3 26 26 H 1.08999 * 109.46909 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47241 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46964 * 300.00018 * 3 2 1 29 29 H 1.09002 * 109.46971 * 59.99697 * 3 2 1 30 30 H 1.09004 * 109.46800 * 299.99934 * 4 2 1 31 31 H 1.08993 * 109.47378 * 59.99984 * 4 2 1 32 32 H 1.09004 * 109.47001 * 180.02562 * 4 2 1 33 33 H 1.08995 * 109.47010 * 300.00011 * 5 2 1 34 34 H 1.08993 * 109.46891 * 179.97438 * 5 2 1 35 35 H 1.08990 * 117.50086 * 359.97396 * 8 6 5 36 36 H 1.09004 * 117.49623 * 145.00280 * 8 6 5 37 37 H 0.97002 * 119.99859 * 0.02562 * 13 11 9 38 38 H 1.08994 * 109.47052 * 300.00199 * 14 13 11 39 39 H 1.09003 * 109.46943 * 60.00432 * 14 13 11 40 40 H 1.08994 * 109.47543 * 299.99985 * 15 14 13 41 41 H 1.09001 * 109.47449 * 60.00517 * 15 14 13 42 42 H 0.96996 * 120.00085 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2493 6 6 1.5300 -2.1637 1.2493 7 1 1.3617 -2.6029 0.2660 8 6 0.5862 -2.5793 2.3796 9 6 2.0284 -3.0898 2.3605 10 1 2.7202 -2.6715 3.0917 11 6 2.2492 -4.5392 2.0118 12 8 2.0319 -4.9317 0.8850 13 7 2.6880 -5.3992 2.9521 14 6 2.9020 -6.8084 2.6131 15 6 3.3979 -7.5606 3.8497 16 6 3.6186 -9.0101 3.5009 17 1 3.4251 -9.3596 2.4976 18 6 4.0677 -9.8899 4.4628 19 7 4.3039 -9.4642 5.6845 20 14 4.3420 -11.6863 4.0303 21 1 4.0063 -11.9082 2.6009 22 1 5.7647 -12.0405 4.2657 23 1 3.4725 -12.5384 4.8806 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1301 -0.7216 -1.2490 33 1 1.6767 -0.2074 2.1393 34 1 3.1299 -0.7216 1.2491 35 1 0.3290 -1.8253 3.1233 36 1 -0.2030 -3.2920 2.1398 37 1 2.8615 -5.0854 3.8534 38 1 1.9640 -7.2467 2.2726 39 1 3.6466 -6.8824 1.8205 40 1 4.3360 -7.1222 4.1898 41 1 2.6537 -7.4867 4.6427 42 1 4.6202 -10.0831 6.3611 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592618607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:31 Heat of formation + Delta-G solvation = -53.471931 kcal Electronic energy + Delta-G solvation = -18341.547870 eV Core-core repulsion = 15513.896187 eV Total energy + Delta-G solvation = -2827.651683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.82227 -38.20340 -35.70987 -34.69496 -32.81402 -29.75812 -27.84366 -27.46275 -27.39575 -25.28052 -23.28280 -21.30358 -20.81448 -19.65409 -18.87323 -17.03842 -16.37132 -15.45563 -15.00475 -14.81889 -14.69066 -14.46086 -14.41975 -13.73459 -13.49505 -13.00977 -12.89858 -12.41217 -12.30388 -12.25675 -11.89499 -11.86370 -11.65576 -11.19426 -11.12282 -11.04055 -10.92569 -10.63308 -10.58546 -10.34635 -10.18506 -9.99209 -9.77052 -9.42897 -9.14391 -8.53054 -8.33773 -6.09537 -4.12280 2.85071 3.28272 3.35691 3.40681 3.61483 3.92639 4.40586 4.49573 4.58501 4.65964 4.88682 4.92613 5.00108 5.25657 5.27567 5.32295 5.39409 5.42553 5.47011 5.61191 5.63637 5.67458 5.70370 5.74058 5.87190 5.92047 5.95812 6.09611 6.16993 6.20528 6.35729 6.36404 6.39393 6.74733 6.95817 7.52515 7.62137 7.89040 8.06575 8.28383 8.70649 8.94129 9.52613 11.02167 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.055917 B = 0.003043 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.626136 B = 9199.009510 C = 9345.068106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.079 4.079 6 C -0.118 4.118 7 H 0.121 0.879 8 C -0.150 4.150 9 C -0.189 4.189 10 H 0.120 0.880 11 C 0.533 3.467 12 O -0.553 6.553 13 N -0.719 5.719 14 C 0.122 3.878 15 C 0.012 3.988 16 C -0.521 4.521 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.398 0.602 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.908 20.945 -7.160 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 C -0.199 4.199 4 C -0.203 4.203 5 C -0.117 4.117 6 C -0.137 4.137 7 H 0.139 0.861 8 C -0.188 4.188 9 C -0.210 4.210 10 H 0.138 0.862 11 C 0.319 3.681 12 O -0.432 6.432 13 N -0.368 5.368 14 C -0.001 4.001 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.232 0.768 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.990 20.564 -7.793 22.792 hybrid contribution 0.375 -0.949 0.505 1.138 sum -5.616 19.615 -7.288 21.666 Atomic orbital electron populations 1.21880 0.94494 1.02219 1.01220 1.20509 0.95833 0.95033 0.95311 1.21875 1.00953 0.95471 1.01558 1.21962 1.01057 1.00798 0.96508 1.21281 1.00474 0.92431 0.97487 1.22480 1.01506 0.94389 0.95276 0.86133 1.23067 0.91414 1.02874 1.01431 1.22356 1.00175 0.93528 1.04978 0.86246 1.19631 0.76993 0.86433 0.85038 1.90653 1.52341 1.79047 1.21184 1.46268 1.66415 1.10803 1.13270 1.21719 1.00148 0.77698 1.00505 1.19327 0.96703 0.94930 0.91561 1.21100 1.44815 0.93149 0.96888 0.92206 1.25002 0.95271 0.99139 0.94928 1.69964 1.45731 1.35230 1.02409 0.86455 0.77821 0.84626 0.78666 1.19580 1.20918 1.20924 0.92864 0.93088 0.92070 0.92709 0.92746 0.92790 0.91849 0.92962 0.92681 0.91664 0.91398 0.88132 0.88467 0.76846 0.92652 0.92616 0.95940 0.95934 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.23 37.16 0.31 -0.82 16 2 C -0.07 -0.55 0.80 -154.50 -0.12 -0.68 16 3 C -0.14 -1.01 8.47 37.16 0.31 -0.69 16 4 C -0.15 -1.32 8.23 37.16 0.31 -1.01 16 5 C -0.08 -0.71 4.55 -26.73 -0.12 -0.83 16 6 C -0.12 -1.33 3.77 -90.62 -0.34 -1.67 16 7 H 0.12 1.59 5.58 -51.93 -0.29 1.30 16 8 C -0.15 -1.62 9.88 -26.73 -0.26 -1.89 16 9 C -0.19 -2.41 5.91 -91.77 -0.54 -2.95 16 10 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 11 C 0.53 9.34 7.61 -10.99 -0.08 9.25 16 12 O -0.55 -11.69 16.26 5.55 0.09 -11.60 16 13 N -0.72 -12.96 5.56 -60.29 -0.33 -13.29 16 14 C 0.12 2.65 5.61 -4.04 -0.02 2.63 16 15 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 16 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 20 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.54 7.20 -51.93 -0.37 0.16 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.65 6.14 -51.93 -0.32 0.34 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.87 8.03 -51.93 -0.42 0.45 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.40 6.23 8.47 -40.82 -0.35 5.89 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -31.19 342.03 -8.12 -39.30 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.61 Total: 1.38 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -1.13 Total: -11.87 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.40 Total: -38.86 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.19 -8.12 -39.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592618607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.170 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds