Wall clock time and date at job start Sun Mar 29 2020 23:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.82197 * 2 1 4 4 C 1.54382 * 109.83359 * 239.11562 * 2 1 3 5 5 C 1.55454 * 102.18577 * 219.18130 * 4 2 1 6 6 H 1.09001 * 111.05950 * 276.12315 * 5 4 2 7 7 N 1.46896 * 111.18254 * 152.00298 * 5 4 2 8 8 C 1.46846 * 111.00149 * 186.16252 * 7 5 4 9 9 C 1.53038 * 109.52479 * 174.16593 * 8 7 5 10 10 C 1.53114 * 109.27942 * 59.17710 * 9 8 7 11 11 C 1.50704 * 109.57640 * 182.40983 * 10 9 8 12 12 H 1.08002 * 119.99852 * 119.71629 * 11 10 9 13 13 C 1.37877 * 119.99859 * 299.71852 * 11 10 9 14 14 N 1.31515 * 120.00137 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99821 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47294 * 60.00072 * 15 13 11 17 17 H 1.48500 * 109.47015 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47410 * 299.99962 * 15 13 11 19 19 C 1.53119 * 109.16281 * 302.34700 * 10 9 8 20 20 C 1.46854 * 110.99771 * 61.95545 * 7 5 4 21 21 C 1.54951 * 100.98918 * 34.03773 * 5 4 2 22 22 O 1.43234 * 109.82959 * 120.88305 * 2 1 3 23 23 H 1.09000 * 109.47058 * 60.69868 * 1 2 3 24 24 H 1.09001 * 109.46954 * 180.69856 * 1 2 3 25 25 H 1.08998 * 109.47090 * 300.69985 * 1 2 3 26 26 H 1.09006 * 109.47503 * 59.30141 * 3 2 1 27 27 H 1.09005 * 109.47046 * 179.29712 * 3 2 1 28 28 H 1.08997 * 109.47787 * 299.29853 * 3 2 1 29 29 H 1.08997 * 110.84309 * 337.31916 * 4 2 1 30 30 H 1.09000 * 110.85007 * 100.93982 * 4 2 1 31 31 H 1.09002 * 109.46148 * 294.18219 * 8 7 5 32 32 H 1.09000 * 109.46133 * 54.14389 * 8 7 5 33 33 H 1.09005 * 109.50051 * 299.24068 * 9 8 7 34 34 H 1.08995 * 109.53518 * 179.14040 * 9 8 7 35 35 H 1.09007 * 109.52470 * 62.25400 * 10 9 8 36 36 H 0.97001 * 120.00068 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.50503 * 297.71119 * 19 10 9 38 38 H 1.09003 * 109.53793 * 177.61081 * 19 10 9 39 39 H 1.08998 * 109.46168 * 305.85266 * 20 7 5 40 40 H 1.09001 * 109.46233 * 65.83135 * 20 7 5 41 41 H 1.08998 * 110.30847 * 204.69288 * 21 5 4 42 42 H 1.08996 * 110.30679 * 82.51705 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4394 0.0000 4 6 2.0538 -0.7454 -1.2463 5 6 3.2731 -1.5226 -0.6755 6 1 4.1621 -0.8924 -0.6498 7 7 3.5223 -2.7533 -1.4378 8 6 4.5790 -3.5566 -0.8097 9 6 4.7105 -4.8928 -1.5441 10 6 5.0485 -4.6306 -3.0142 11 6 5.1214 -5.9399 -3.7569 12 1 4.4562 -6.1277 -4.5868 13 6 6.0372 -6.8980 -3.3769 14 7 6.8475 -6.6691 -2.3666 15 14 6.1270 -8.5211 -4.2970 16 1 6.4478 -8.2642 -5.7240 17 1 7.1862 -9.3720 -3.6975 18 1 4.8189 -9.2175 -4.2014 19 6 3.9572 -3.7520 -3.6319 20 6 3.8476 -2.4488 -2.8371 21 6 2.7748 -1.8438 0.7561 22 8 2.0159 -0.6916 1.1564 23 1 -0.3633 0.5029 -0.8962 24 1 -0.3633 -1.0276 0.0125 25 1 -0.3633 0.5247 0.8836 26 1 1.6785 1.9592 0.8837 27 1 3.1388 1.4327 0.0126 28 1 1.6990 1.9518 -0.8961 29 1 1.3013 -1.4335 -1.6315 30 1 2.3673 -0.0408 -2.0166 31 1 5.5251 -3.0180 -0.8635 32 1 4.3242 -3.7393 0.2342 33 1 3.7689 -5.4381 -1.4789 34 1 5.5051 -5.4829 -1.0876 35 1 6.0091 -4.1197 -3.0816 36 1 7.4921 -7.3429 -2.0995 37 1 3.0037 -4.2793 -3.5996 38 1 4.2133 -3.5264 -4.6671 39 1 3.0616 -1.8271 -3.2657 40 1 4.7972 -1.9156 -2.8814 41 1 3.6210 -1.9912 1.4271 42 1 2.1401 -2.7299 0.7458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595425996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:40 Heat of formation + Delta-G solvation = -60.237597 kcal Electronic energy + Delta-G solvation = -19775.505044 eV Core-core repulsion = 16947.559980 eV Total energy + Delta-G solvation = -2827.945064 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.04704 -37.78526 -34.03406 -33.20915 -31.73818 -29.97673 -29.07062 -27.43699 -25.86029 -25.31935 -22.28879 -21.95671 -20.38064 -19.78225 -18.65838 -16.70037 -16.23089 -15.85338 -14.96257 -14.61976 -14.18718 -14.12308 -13.67607 -13.46002 -13.12115 -12.96170 -12.59408 -12.52522 -12.23348 -12.21968 -11.94329 -11.66141 -11.38545 -11.07022 -10.90075 -10.82337 -10.76800 -10.48504 -10.38649 -10.22638 -9.93546 -9.49289 -9.43177 -8.95729 -8.71601 -8.28917 -7.83607 -5.96844 -4.02246 3.33258 3.37873 3.40659 3.73791 4.30580 4.45694 4.54500 4.81583 4.84073 5.09395 5.24584 5.29239 5.33540 5.49290 5.56597 5.63719 5.73336 5.78064 5.79500 5.83913 5.85537 5.96759 6.03872 6.08534 6.11942 6.19406 6.28389 6.29978 6.57355 6.61135 6.84017 7.05641 7.10829 7.15118 7.42727 7.58392 7.65647 7.81832 8.04430 8.15255 8.48418 9.01141 9.62176 11.09360 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.049775 B = 0.004516 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.401381 B = 6199.221933 C = 6388.294351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.100 3.900 3 C -0.151 4.151 4 C -0.136 4.136 5 C 0.048 3.952 6 H 0.050 0.950 7 N -0.522 5.522 8 C 0.055 3.945 9 C -0.104 4.104 10 C 0.048 3.952 11 C -0.511 4.511 12 H 0.054 0.946 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.890 3.110 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.106 4.106 20 C 0.060 3.940 21 C 0.061 3.939 22 O -0.377 6.377 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.023 0.977 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.093 0.907 35 H 0.020 0.980 36 H 0.260 0.740 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.023 0.977 41 H 0.081 0.919 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.791 12.962 4.230 16.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.061 3.939 3 C -0.209 4.209 4 C -0.174 4.174 5 C -0.061 4.061 6 H 0.068 0.932 7 N -0.249 5.249 8 C -0.072 4.072 9 C -0.142 4.142 10 C 0.029 3.971 11 C -0.549 4.549 12 H 0.072 0.928 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.718 3.282 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.144 4.144 20 C -0.067 4.067 21 C -0.016 4.016 22 O -0.296 6.296 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.042 0.958 41 H 0.099 0.901 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.107 12.663 4.549 16.247 hybrid contribution 0.979 -0.500 -0.673 1.289 sum -8.128 12.163 3.876 15.134 Atomic orbital electron populations 1.22084 0.94278 1.02624 1.01967 1.22028 0.93960 0.92447 0.85472 1.22078 1.01627 0.95144 1.02042 1.23240 0.98112 0.98957 0.97091 1.23278 0.96861 0.91953 0.94012 0.93184 1.62069 1.44941 1.15691 1.02149 1.22326 0.90722 0.96541 0.97632 1.21664 1.01523 0.92831 0.98171 1.18680 0.92577 0.93984 0.91829 1.21170 1.18288 1.00287 1.15197 0.92810 1.24963 0.95509 0.98374 0.95115 1.69863 1.21545 1.34710 1.27044 0.86693 0.77633 0.83815 0.80044 1.20393 1.21372 1.20300 1.21682 1.01180 0.94280 0.97252 1.22135 0.97845 0.98592 0.88139 1.23363 0.95075 0.88902 0.94257 1.88408 1.70772 1.40503 1.29896 0.91700 0.91986 0.92191 0.92109 0.92260 0.91673 0.89341 0.90493 0.95857 0.92495 0.93760 0.88880 0.96189 0.93041 0.92456 0.93160 0.92302 0.95835 0.90103 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.74 37.16 0.32 -1.24 16 2 C 0.10 1.19 1.27 -89.90 -0.11 1.08 16 3 C -0.15 -1.54 8.73 37.16 0.32 -1.21 16 4 C -0.14 -1.70 4.48 -24.70 -0.11 -1.82 16 5 C 0.05 0.71 2.75 -65.38 -0.18 0.53 16 6 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 7 N -0.52 -9.11 4.56 -223.90 -1.02 -10.14 16 8 C 0.05 1.06 5.32 -3.83 -0.02 1.04 16 9 C -0.10 -2.42 5.12 -26.65 -0.14 -2.56 16 10 C 0.05 1.18 2.16 -91.65 -0.20 0.98 16 11 C -0.51 -13.99 8.56 -34.44 -0.29 -14.29 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 14 N -0.89 -25.34 11.37 55.43 0.63 -24.71 16 15 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.11 -2.20 5.32 -26.65 -0.14 -2.35 16 20 C 0.06 1.07 5.32 -3.83 -0.02 1.05 16 21 C 0.06 0.87 6.22 38.19 0.24 1.11 16 22 O -0.38 -5.37 10.68 -35.23 -0.38 -5.74 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.16 7.85 -51.93 -0.41 0.75 16 30 H 0.08 0.87 7.72 -51.93 -0.40 0.47 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 1.01 6.90 -51.93 -0.36 0.65 16 33 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.91 6.98 -51.93 -0.36 0.55 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.08 1.10 7.91 -51.93 -0.41 0.69 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 320.33 15.07 4.83 4.83 Total: -1.00 -28.06 320.33 -9.11 -37.17 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.72 Total: -1.57 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -0.42 Total: -16.08 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.39 Total: -34.84 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.38 Total: -5.74 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.06 -9.11 -37.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595425996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.071 kcal (2) G-P(sol) polarization free energy of solvation -28.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds