Wall clock time and date at job start Sun Mar 29 2020 23:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.82197 * 2 1 4 4 C 1.54382 * 109.83359 * 239.11562 * 2 1 3 5 5 C 1.55454 * 102.18577 * 219.18130 * 4 2 1 6 6 H 1.09001 * 111.05950 * 276.12315 * 5 4 2 7 7 N 1.46896 * 111.18254 * 152.00298 * 5 4 2 8 8 C 1.46846 * 111.00149 * 186.16252 * 7 5 4 9 9 C 1.53038 * 109.52479 * 174.16593 * 8 7 5 10 10 C 1.53114 * 109.27942 * 59.17710 * 9 8 7 11 11 C 1.50704 * 109.57640 * 182.40983 * 10 9 8 12 12 H 1.08002 * 119.99852 * 119.71629 * 11 10 9 13 13 C 1.37877 * 119.99859 * 299.71852 * 11 10 9 14 14 N 1.31515 * 120.00137 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99821 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47294 * 60.00072 * 15 13 11 17 17 H 1.48500 * 109.47015 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47410 * 299.99962 * 15 13 11 19 19 C 1.53119 * 109.16281 * 302.34700 * 10 9 8 20 20 C 1.46854 * 110.99771 * 61.95545 * 7 5 4 21 21 C 1.54951 * 100.98918 * 34.03773 * 5 4 2 22 22 O 1.43234 * 109.82959 * 120.88305 * 2 1 3 23 23 H 1.09000 * 109.47058 * 60.69868 * 1 2 3 24 24 H 1.09001 * 109.46954 * 180.69856 * 1 2 3 25 25 H 1.08998 * 109.47090 * 300.69985 * 1 2 3 26 26 H 1.09006 * 109.47503 * 59.30141 * 3 2 1 27 27 H 1.09005 * 109.47046 * 179.29712 * 3 2 1 28 28 H 1.08997 * 109.47787 * 299.29853 * 3 2 1 29 29 H 1.08997 * 110.84309 * 337.31916 * 4 2 1 30 30 H 1.09000 * 110.85007 * 100.93982 * 4 2 1 31 31 H 1.09002 * 109.46148 * 294.18219 * 8 7 5 32 32 H 1.09000 * 109.46133 * 54.14389 * 8 7 5 33 33 H 1.09005 * 109.50051 * 299.24068 * 9 8 7 34 34 H 1.08995 * 109.53518 * 179.14040 * 9 8 7 35 35 H 1.09007 * 109.52470 * 62.25400 * 10 9 8 36 36 H 0.97001 * 120.00068 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.50503 * 297.71119 * 19 10 9 38 38 H 1.09003 * 109.53793 * 177.61081 * 19 10 9 39 39 H 1.08998 * 109.46168 * 305.85266 * 20 7 5 40 40 H 1.09001 * 109.46233 * 65.83135 * 20 7 5 41 41 H 1.08998 * 110.30847 * 204.69288 * 21 5 4 42 42 H 1.08996 * 110.30679 * 82.51705 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4394 0.0000 4 6 2.0538 -0.7454 -1.2463 5 6 3.2731 -1.5226 -0.6755 6 1 4.1621 -0.8924 -0.6498 7 7 3.5223 -2.7533 -1.4378 8 6 4.5790 -3.5566 -0.8097 9 6 4.7105 -4.8928 -1.5441 10 6 5.0485 -4.6306 -3.0142 11 6 5.1214 -5.9399 -3.7569 12 1 4.4562 -6.1277 -4.5868 13 6 6.0372 -6.8980 -3.3769 14 7 6.8475 -6.6691 -2.3666 15 14 6.1270 -8.5211 -4.2970 16 1 6.4478 -8.2642 -5.7240 17 1 7.1862 -9.3720 -3.6975 18 1 4.8189 -9.2175 -4.2014 19 6 3.9572 -3.7520 -3.6319 20 6 3.8476 -2.4488 -2.8371 21 6 2.7748 -1.8438 0.7561 22 8 2.0159 -0.6916 1.1564 23 1 -0.3633 0.5029 -0.8962 24 1 -0.3633 -1.0276 0.0125 25 1 -0.3633 0.5247 0.8836 26 1 1.6785 1.9592 0.8837 27 1 3.1388 1.4327 0.0126 28 1 1.6990 1.9518 -0.8961 29 1 1.3013 -1.4335 -1.6315 30 1 2.3673 -0.0408 -2.0166 31 1 5.5251 -3.0180 -0.8635 32 1 4.3242 -3.7393 0.2342 33 1 3.7689 -5.4381 -1.4789 34 1 5.5051 -5.4829 -1.0876 35 1 6.0091 -4.1197 -3.0816 36 1 7.4921 -7.3429 -2.0995 37 1 3.0037 -4.2793 -3.5996 38 1 4.2133 -3.5264 -4.6671 39 1 3.0616 -1.8271 -3.2657 40 1 4.7972 -1.9156 -2.8814 41 1 3.6210 -1.9912 1.4271 42 1 2.1401 -2.7299 0.7458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595425996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:39 Heat of formation + Delta-G solvation = -76.825982 kcal Electronic energy + Delta-G solvation = -19776.224371 eV Core-core repulsion = 16947.559980 eV Total energy + Delta-G solvation = -2828.664391 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.16547 -39.27742 -35.78300 -34.15128 -33.52941 -31.58326 -30.54557 -28.20983 -27.35432 -26.77577 -23.95116 -23.55554 -21.66144 -20.79256 -20.40612 -18.46756 -17.72344 -16.96999 -16.54407 -16.04691 -15.62338 -15.44491 -14.85926 -14.74439 -14.50983 -14.23547 -14.18419 -14.05416 -13.65202 -13.14564 -13.03776 -12.90888 -12.78552 -12.59809 -12.52027 -12.36133 -12.07784 -11.98387 -11.91518 -11.73354 -11.43288 -11.28830 -10.78950 -10.65105 -10.50764 -10.36670 -9.27062 -8.07462 -6.20814 1.42221 1.43278 1.50838 2.44386 2.64952 3.06403 3.19649 3.47476 3.82487 3.94213 4.10710 4.15263 4.23151 4.25059 4.31418 4.42960 4.53961 4.69943 4.72688 4.76140 4.79095 4.80734 4.88600 4.91760 4.96131 4.98711 5.01088 5.05712 5.11667 5.24717 5.29866 5.33371 5.42342 5.55866 5.63013 5.98821 6.00492 6.10873 6.25992 6.30664 6.41073 6.90629 7.47066 8.96934 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.049775 B = 0.004516 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.401381 B = 6199.221933 C = 6388.294351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.093 3.907 3 C -0.149 4.149 4 C -0.130 4.130 5 C 0.047 3.953 6 H 0.051 0.949 7 N -0.525 5.525 8 C 0.067 3.933 9 C -0.094 4.094 10 C 0.043 3.957 11 C -0.534 4.534 12 H 0.051 0.949 13 C 0.013 3.987 14 N -0.918 5.918 15 Si 0.952 3.048 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.099 4.099 20 C 0.067 3.933 21 C 0.064 3.936 22 O -0.390 6.390 23 H 0.084 0.916 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.015 0.985 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.061 0.939 35 H -0.013 1.013 36 H 0.260 0.740 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.020 0.980 41 H 0.083 0.917 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.116 14.218 3.791 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.054 3.946 3 C -0.206 4.206 4 C -0.167 4.167 5 C -0.062 4.062 6 H 0.069 0.931 7 N -0.251 5.251 8 C -0.061 4.061 9 C -0.133 4.133 10 C 0.025 3.975 11 C -0.572 4.572 12 H 0.069 0.931 13 C -0.185 4.185 14 N -0.558 5.558 15 Si 0.778 3.222 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.137 4.137 20 C -0.060 4.060 21 C -0.013 4.013 22 O -0.310 6.310 23 H 0.103 0.897 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.033 0.967 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.005 0.995 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.038 0.962 41 H 0.101 0.899 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.447 13.935 4.107 17.893 hybrid contribution 1.385 -0.870 -0.530 1.719 sum -9.062 13.064 3.577 16.297 Atomic orbital electron populations 1.22081 0.93022 1.02419 1.03204 1.22274 0.94999 0.93015 0.84287 1.22078 1.01185 0.94076 1.03306 1.23240 0.96748 0.98929 0.97808 1.23321 0.97911 0.90770 0.94173 0.93123 1.62000 1.43620 1.17234 1.02273 1.22074 0.91251 0.94703 0.98054 1.21413 0.99467 0.94647 0.97736 1.18664 0.92443 0.93568 0.92847 1.21564 1.18429 1.01711 1.15516 0.93053 1.25729 0.95225 1.01681 0.95910 1.70006 1.21954 1.35653 1.28145 0.85703 0.77748 0.79788 0.78956 1.19721 1.21019 1.19707 1.21544 0.99191 0.95150 0.97812 1.22064 0.98920 0.97031 0.88013 1.23279 0.95056 0.88884 0.94092 1.88402 1.70872 1.40470 1.31246 0.89669 0.92903 0.91811 0.91777 0.92940 0.89567 0.89685 0.88750 0.96706 0.90847 0.94975 0.92044 0.99462 0.93112 0.92896 0.92708 0.89095 0.96161 0.89854 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.74 71.98 0.63 -2.04 16 2 C 0.09 1.97 1.27 -10.32 -0.01 1.96 16 3 C -0.15 -2.58 8.73 71.98 0.63 -1.95 16 4 C -0.13 -2.87 4.48 31.91 0.14 -2.72 16 5 C 0.05 1.30 2.75 46.43 0.13 1.42 16 6 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 7 N -0.53 -17.66 4.56 -862.30 -3.93 -21.60 16 8 C 0.07 2.58 5.32 86.33 0.46 3.04 16 9 C -0.09 -4.52 5.12 30.65 0.16 -4.37 16 10 C 0.04 2.19 2.16 -11.46 -0.02 2.17 16 11 C -0.53 -29.79 8.56 25.60 0.22 -29.57 16 12 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 13 C 0.01 0.72 5.31 84.65 0.45 1.17 16 14 N -0.92 -53.42 11.37 21.45 0.24 -53.18 16 15 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 C -0.10 -4.08 5.32 30.65 0.16 -3.92 16 20 C 0.07 2.27 5.32 86.32 0.46 2.73 16 21 C 0.06 1.74 6.22 72.65 0.45 2.19 16 22 O -0.39 -10.44 10.68 -148.98 -1.59 -12.03 16 23 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.98 7.85 -2.39 -0.02 1.96 16 30 H 0.09 1.77 7.72 -2.39 -0.02 1.75 16 31 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 2.58 6.90 -2.39 -0.02 2.56 16 33 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.06 3.33 6.17 -2.39 -0.01 3.31 16 35 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 36 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 37 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.09 2.52 6.98 -2.39 -0.02 2.50 16 40 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.08 2.19 7.91 -2.39 -0.02 2.17 16 42 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -60.79 320.33 1.55 -59.24 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.95 Total: 11.49 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 3.85 Total: -29.89 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -3.69 Total: -74.77 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -1.59 Total: -12.03 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -60.79 1.55 -59.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595425996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.586 kcal (2) G-P(sol) polarization free energy of solvation -60.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds