Wall clock time and date at job start Sun Mar 29 2020 23:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46904 * 109.47195 * 180.27796 * 9 7 2 11 11 C 1.46842 * 110.99891 * 66.04853 * 10 9 7 12 12 C 1.53034 * 109.52377 * 174.16075 * 11 10 9 13 13 C 1.53113 * 109.27876 * 59.18210 * 12 11 10 14 14 C 1.53122 * 109.16196 * 302.34455 * 13 12 11 15 15 H 1.09002 * 109.50125 * 297.67327 * 14 13 12 16 16 C 1.52996 * 109.50792 * 177.59478 * 14 13 12 17 17 H 1.08993 * 109.48283 * 185.02537 * 16 14 13 18 18 C 1.53093 * 109.47939 * 64.99911 * 16 14 13 19 19 C 1.53177 * 109.16382 * 182.40958 * 18 16 14 20 20 C 1.53177 * 109.03446 * 56.98184 * 19 18 16 21 21 C 1.53091 * 109.16497 * 303.01745 * 20 19 18 22 22 O 1.42905 * 109.47904 * 305.05821 * 16 14 13 23 23 C 1.46846 * 110.99976 * 301.83847 * 10 9 7 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 26 26 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 27 27 H 1.08998 * 109.46755 * 294.17847 * 11 10 9 28 28 H 1.09001 * 109.46542 * 54.14239 * 11 10 9 29 29 H 1.09003 * 109.50197 * 179.11896 * 12 11 10 30 30 H 1.09001 * 109.50556 * 299.23565 * 12 11 10 31 31 H 1.09003 * 109.52552 * 62.24739 * 13 12 11 32 32 H 1.09002 * 109.52526 * 182.43712 * 13 12 11 33 33 H 1.09000 * 109.52718 * 302.31517 * 18 16 14 34 34 H 1.08995 * 109.52146 * 62.50359 * 18 16 14 35 35 H 1.08997 * 109.54494 * 176.84552 * 19 18 16 36 36 H 1.08997 * 109.54186 * 297.02733 * 19 18 16 37 37 H 1.08994 * 109.52356 * 62.92901 * 20 19 18 38 38 H 1.09007 * 109.52198 * 183.11767 * 20 19 18 39 39 H 1.09004 * 109.48110 * 177.59166 * 21 20 19 40 40 H 1.09004 * 109.48249 * 297.61662 * 21 20 19 41 41 H 1.09001 * 109.46535 * 305.85838 * 23 10 9 42 42 H 1.09009 * 109.45967 * 65.82527 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2058 -3.6156 0.0103 11 6 2.9709 -3.6483 1.2632 12 6 3.8473 -4.9025 1.2947 13 6 4.7981 -4.8851 0.0947 14 6 3.9776 -4.8021 -1.1955 15 1 3.3483 -5.6877 -1.2841 16 6 4.9214 -4.7238 -2.3971 17 1 4.3400 -4.5750 -3.3069 18 6 5.7172 -6.0270 -2.5069 19 6 6.7021 -5.9178 -3.6750 20 6 7.6064 -4.7014 -3.4539 21 6 6.7377 -3.4494 -3.3074 22 8 5.8238 -3.6294 -2.2236 23 6 3.0973 -3.5508 -1.1548 24 1 -0.4850 0.8400 0.0004 25 1 0.6245 -2.5529 0.8956 26 1 0.6244 -2.5609 -0.8844 27 1 3.6025 -2.7622 1.3263 28 1 2.2830 -3.6646 2.1085 29 1 4.4267 -4.9184 2.2178 30 1 3.2154 -5.7893 1.2457 31 1 5.4564 -4.0191 0.1640 32 1 5.3943 -5.7975 0.0891 33 1 6.2672 -6.1972 -1.5814 34 1 5.0336 -6.8574 -2.6833 35 1 7.3109 -6.8206 -3.7242 36 1 6.1502 -5.7989 -4.6073 37 1 8.1946 -4.8448 -2.5475 38 1 8.2739 -4.5838 -4.3076 39 1 7.3737 -2.5870 -3.1072 40 1 6.1804 -3.2837 -4.2294 41 1 2.5012 -3.4963 -2.0657 42 1 3.7284 -2.6651 -1.0803 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595788313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:05 Heat of formation + Delta-G solvation = -69.528936 kcal Electronic energy + Delta-G solvation = -20006.232303 eV Core-core repulsion = 17177.884336 eV Total energy + Delta-G solvation = -2828.347967 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.71184 -37.72647 -33.91247 -33.56878 -32.26771 -31.22616 -28.98785 -26.62814 -24.89460 -24.03467 -23.31744 -21.63779 -20.83031 -19.80639 -18.94861 -16.32036 -16.02308 -15.88131 -14.99220 -14.66767 -14.56384 -14.31617 -13.98777 -13.47868 -13.31677 -13.04364 -12.65251 -12.57983 -12.27078 -11.88224 -11.60006 -11.32364 -11.14915 -11.04310 -10.87744 -10.78495 -10.46075 -10.36897 -10.28500 -10.23304 -9.93188 -9.66862 -9.53824 -9.41130 -9.11692 -8.37013 -7.04543 -5.95869 -4.04479 3.30534 3.38417 3.43708 3.96688 4.46613 4.67476 4.75788 4.84152 4.95708 5.11515 5.23267 5.33698 5.36721 5.40455 5.50049 5.58184 5.65971 5.73230 5.78503 5.83617 5.89466 5.97218 6.00224 6.13933 6.17982 6.21526 6.35314 6.40049 6.50104 6.64900 6.68626 6.84353 6.94113 7.10487 7.37583 7.47315 7.60481 7.97517 8.17808 8.38643 8.43382 9.07153 9.62202 11.08868 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.023020 B = 0.006239 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.029981 B = 4486.948587 C = 5199.558283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.187 3.813 10 N -0.543 5.543 11 C 0.063 3.937 12 C -0.117 4.117 13 C -0.106 4.106 14 C -0.077 4.077 15 H 0.081 0.919 16 C 0.097 3.903 17 H 0.055 0.945 18 C -0.150 4.150 19 C -0.122 4.122 20 C -0.155 4.155 21 C 0.059 3.941 22 O -0.367 6.367 23 C 0.074 3.926 24 H 0.260 0.740 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.036 0.964 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.948 -11.522 -5.399 18.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.061 3.939 10 N -0.267 5.267 11 C -0.065 4.065 12 C -0.155 4.155 13 C -0.144 4.144 14 C -0.095 4.095 15 H 0.099 0.901 16 C 0.039 3.961 17 H 0.073 0.927 18 C -0.188 4.188 19 C -0.160 4.160 20 C -0.193 4.193 21 C -0.018 4.018 22 O -0.286 6.286 23 C -0.055 4.055 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.503 -11.720 -5.259 17.926 hybrid contribution 0.919 1.655 -0.272 1.913 sum 13.423 -10.065 -5.531 17.665 Atomic orbital electron populations 1.69958 1.05991 1.26570 1.50705 1.24958 0.94735 0.99084 0.95081 0.86618 0.80283 0.84066 0.77569 1.19786 1.21007 1.21018 1.21839 0.93495 0.92080 1.50918 0.92314 1.19735 0.90810 0.85588 0.97747 1.62420 1.17122 1.46281 1.00877 1.21841 0.95702 0.95600 0.93400 1.21634 0.97531 0.99245 0.97101 1.21513 0.97488 1.01180 0.94206 1.21303 0.95085 1.00210 0.92948 0.90103 1.22128 0.89883 0.85563 0.98554 0.92667 1.22249 0.98837 0.98556 0.99151 1.21586 0.97766 0.98030 0.98574 1.22186 0.98675 0.96157 1.02272 1.22516 0.91566 0.97058 0.90649 1.88028 1.47793 1.50211 1.42591 1.21802 0.94174 0.95263 0.94256 0.92984 0.95260 0.95229 0.94610 0.92083 0.92735 0.92113 0.91552 0.93048 0.90827 0.91091 0.91895 0.92026 0.91235 0.91392 0.89249 0.93497 0.92309 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.54 -15.42 7.74 -34.44 -0.27 -15.68 16 8 H 0.06 1.68 5.84 -52.49 -0.31 1.37 16 9 C 0.19 4.97 5.13 -4.97 -0.03 4.95 16 10 N -0.54 -12.12 4.86 -236.11 -1.15 -13.26 16 11 C 0.06 1.29 5.13 -3.84 -0.02 1.27 16 12 C -0.12 -1.90 6.09 -26.66 -0.16 -2.06 16 13 C -0.11 -1.65 4.82 -26.61 -0.13 -1.78 16 14 C -0.08 -1.23 2.19 -90.54 -0.20 -1.43 16 15 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 16 C 0.10 1.37 2.33 -26.69 -0.06 1.31 16 17 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 18 C -0.15 -1.70 5.22 -26.59 -0.14 -1.83 16 19 C -0.12 -1.19 6.03 -26.55 -0.16 -1.35 16 20 C -0.16 -1.54 6.14 -26.59 -0.16 -1.70 16 21 C 0.06 0.71 6.84 37.20 0.25 0.97 16 22 O -0.37 -5.73 9.01 -35.23 -0.32 -6.05 16 23 C 0.07 1.51 4.20 -3.83 -0.02 1.49 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.03 0.83 8.06 -51.93 -0.42 0.41 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.04 0.80 7.03 -51.93 -0.37 0.44 16 28 H 0.06 1.25 8.06 -51.93 -0.42 0.83 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.14 7.49 -51.93 -0.39 0.75 16 32 H 0.05 0.69 6.65 -51.93 -0.35 0.34 16 33 H 0.07 0.85 6.52 -51.93 -0.34 0.51 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 42 H 0.05 1.12 6.23 -51.92 -0.32 0.79 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -30.03 315.34 -9.71 -39.74 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -7.53 Total: -1.98 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -1.18 Total: -14.12 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: -0.41 Total: -39.35 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.32 Total: -6.05 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.03 -9.71 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595788313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.786 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds