Wall clock time and date at job start Sun Mar 29 2020 23:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46904 * 109.47195 * 180.27796 * 9 7 2 11 11 C 1.46842 * 110.99891 * 66.04853 * 10 9 7 12 12 C 1.53034 * 109.52377 * 174.16075 * 11 10 9 13 13 C 1.53113 * 109.27876 * 59.18210 * 12 11 10 14 14 C 1.53122 * 109.16196 * 302.34455 * 13 12 11 15 15 H 1.09002 * 109.50125 * 297.67327 * 14 13 12 16 16 C 1.52996 * 109.50792 * 177.59478 * 14 13 12 17 17 H 1.08993 * 109.48283 * 185.02537 * 16 14 13 18 18 C 1.53093 * 109.47939 * 64.99911 * 16 14 13 19 19 C 1.53177 * 109.16382 * 182.40958 * 18 16 14 20 20 C 1.53177 * 109.03446 * 56.98184 * 19 18 16 21 21 C 1.53091 * 109.16497 * 303.01745 * 20 19 18 22 22 O 1.42905 * 109.47904 * 305.05821 * 16 14 13 23 23 C 1.46846 * 110.99976 * 301.83847 * 10 9 7 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 26 26 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 27 27 H 1.08998 * 109.46755 * 294.17847 * 11 10 9 28 28 H 1.09001 * 109.46542 * 54.14239 * 11 10 9 29 29 H 1.09003 * 109.50197 * 179.11896 * 12 11 10 30 30 H 1.09001 * 109.50556 * 299.23565 * 12 11 10 31 31 H 1.09003 * 109.52552 * 62.24739 * 13 12 11 32 32 H 1.09002 * 109.52526 * 182.43712 * 13 12 11 33 33 H 1.09000 * 109.52718 * 302.31517 * 18 16 14 34 34 H 1.08995 * 109.52146 * 62.50359 * 18 16 14 35 35 H 1.08997 * 109.54494 * 176.84552 * 19 18 16 36 36 H 1.08997 * 109.54186 * 297.02733 * 19 18 16 37 37 H 1.08994 * 109.52356 * 62.92901 * 20 19 18 38 38 H 1.09007 * 109.52198 * 183.11767 * 20 19 18 39 39 H 1.09004 * 109.48110 * 177.59166 * 21 20 19 40 40 H 1.09004 * 109.48249 * 297.61662 * 21 20 19 41 41 H 1.09001 * 109.46535 * 305.85838 * 23 10 9 42 42 H 1.09009 * 109.45967 * 65.82527 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2058 -3.6156 0.0103 11 6 2.9709 -3.6483 1.2632 12 6 3.8473 -4.9025 1.2947 13 6 4.7981 -4.8851 0.0947 14 6 3.9776 -4.8021 -1.1955 15 1 3.3483 -5.6877 -1.2841 16 6 4.9214 -4.7238 -2.3971 17 1 4.3400 -4.5750 -3.3069 18 6 5.7172 -6.0270 -2.5069 19 6 6.7021 -5.9178 -3.6750 20 6 7.6064 -4.7014 -3.4539 21 6 6.7377 -3.4494 -3.3074 22 8 5.8238 -3.6294 -2.2236 23 6 3.0973 -3.5508 -1.1548 24 1 -0.4850 0.8400 0.0004 25 1 0.6245 -2.5529 0.8956 26 1 0.6244 -2.5609 -0.8844 27 1 3.6025 -2.7622 1.3263 28 1 2.2830 -3.6646 2.1085 29 1 4.4267 -4.9184 2.2178 30 1 3.2154 -5.7893 1.2457 31 1 5.4564 -4.0191 0.1640 32 1 5.3943 -5.7975 0.0891 33 1 6.2672 -6.1972 -1.5814 34 1 5.0336 -6.8574 -2.6833 35 1 7.3109 -6.8206 -3.7242 36 1 6.1502 -5.7989 -4.6073 37 1 8.1946 -4.8448 -2.5475 38 1 8.2739 -4.5838 -4.3076 39 1 7.3737 -2.5870 -3.1072 40 1 6.1804 -3.2837 -4.2294 41 1 2.5012 -3.4963 -2.0657 42 1 3.7284 -2.6651 -1.0803 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595788313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:04 Heat of formation + Delta-G solvation = -88.433571 kcal Electronic energy + Delta-G solvation = -20007.052070 eV Core-core repulsion = 17177.884336 eV Total energy + Delta-G solvation = -2829.167734 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.88330 -39.20849 -35.66476 -34.48313 -34.07565 -32.74411 -30.22189 -28.65924 -25.98850 -25.80656 -24.48773 -23.27236 -22.16632 -20.94521 -20.44501 -18.46651 -17.20284 -17.08377 -16.59485 -16.00872 -15.87240 -15.63654 -15.29993 -15.05839 -14.74874 -14.45142 -14.26630 -13.84724 -13.50887 -13.25693 -13.21984 -12.90437 -12.85302 -12.38092 -12.25555 -12.17633 -12.08831 -11.92915 -11.81778 -11.69591 -11.41385 -11.30011 -10.95639 -10.86120 -10.62474 -10.22242 -9.01114 -8.16942 -6.36979 1.32327 1.33189 1.46095 2.35030 2.94274 3.06477 3.33014 3.81015 3.86828 3.99907 4.02102 4.14462 4.16330 4.23039 4.38169 4.48520 4.53762 4.63802 4.69373 4.74233 4.76809 4.91881 4.97986 5.00224 5.00851 5.10590 5.13896 5.16874 5.18335 5.23568 5.27478 5.31639 5.34295 5.36518 5.49660 5.61813 5.73780 6.05928 6.27262 6.43581 6.58585 6.84759 7.34343 8.85093 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.023020 B = 0.006239 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.029981 B = 4486.948587 C = 5199.558283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.554 4.554 8 H 0.051 0.949 9 C 0.199 3.801 10 N -0.540 5.540 11 C 0.062 3.938 12 C -0.107 4.107 13 C -0.100 4.100 14 C -0.070 4.070 15 H 0.094 0.906 16 C 0.097 3.903 17 H 0.049 0.951 18 C -0.144 4.144 19 C -0.121 4.121 20 C -0.149 4.149 21 C 0.050 3.950 22 O -0.399 6.399 23 C 0.080 3.920 24 H 0.266 0.734 25 H 0.005 0.995 26 H 0.003 0.997 27 H 0.009 0.991 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.088 -12.882 -5.765 20.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.593 4.593 8 H 0.069 0.931 9 C 0.072 3.928 10 N -0.263 5.263 11 C -0.067 4.067 12 C -0.145 4.145 13 C -0.137 4.137 14 C -0.088 4.088 15 H 0.112 0.888 16 C 0.039 3.961 17 H 0.067 0.933 18 C -0.181 4.181 19 C -0.158 4.158 20 C -0.186 4.186 21 C -0.027 4.027 22 O -0.319 6.319 23 C -0.048 4.048 24 H 0.075 0.925 25 H 0.023 0.977 26 H 0.021 0.979 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 14.655 -13.096 -5.627 20.444 hybrid contribution 0.219 2.097 -0.168 2.115 sum 14.874 -10.998 -5.795 19.385 Atomic orbital electron populations 1.70066 1.07455 1.27813 1.51248 1.25802 0.95644 1.02770 0.94530 0.85537 0.78753 0.79501 0.78104 1.19651 1.20047 1.19935 1.21985 0.93151 0.93138 1.51024 0.93130 1.19410 0.91266 0.86930 0.95190 1.62394 1.17558 1.43806 1.02581 1.21926 0.95556 0.97116 0.92059 1.21594 0.97222 0.96947 0.98747 1.21472 0.97098 1.01956 0.93194 1.21256 0.95006 0.97799 0.94757 0.88777 1.22109 0.89926 0.87106 0.96989 0.93328 1.22193 0.99042 0.96823 1.00049 1.21608 0.97587 0.98715 0.97917 1.22140 0.98465 0.94950 1.03093 1.22725 0.91497 0.98693 0.89741 1.87982 1.48632 1.51090 1.44172 1.21767 0.93600 0.96732 0.92744 0.92538 0.97654 0.97882 0.97286 0.92725 0.90282 0.90714 0.93494 0.89625 0.90649 0.89658 0.89845 0.91735 0.91384 0.89342 0.88932 0.93447 0.93814 0.96672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 2 C 0.01 0.69 5.46 84.65 0.46 1.15 16 3 Si 0.96 45.93 29.54 68.60 2.03 47.96 16 4 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.55 -32.62 7.74 25.60 0.20 -32.42 16 8 H 0.05 3.02 5.84 -2.91 -0.02 3.00 16 9 C 0.20 11.14 5.13 85.56 0.44 11.58 16 10 N -0.54 -24.88 4.86 -900.91 -4.38 -29.26 16 11 C 0.06 2.56 5.13 86.33 0.44 3.01 16 12 C -0.11 -3.27 6.09 30.64 0.19 -3.09 16 13 C -0.10 -2.90 4.82 30.67 0.15 -2.75 16 14 C -0.07 -2.17 2.19 -10.74 -0.02 -2.19 16 15 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 16 C 0.10 2.62 2.33 30.62 0.07 2.70 16 17 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 18 C -0.14 -2.80 5.22 30.68 0.16 -2.64 16 19 C -0.12 -1.96 6.03 30.71 0.19 -1.77 16 20 C -0.15 -2.55 6.14 30.68 0.19 -2.37 16 21 C 0.05 1.15 6.84 72.01 0.49 1.65 16 22 O -0.40 -12.30 9.01 -148.98 -1.34 -13.64 16 23 C 0.08 3.39 4.20 86.33 0.36 3.75 16 24 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 25 H 0.01 0.32 8.06 -2.39 -0.02 0.30 16 26 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 27 H 0.01 0.41 7.03 -2.39 -0.02 0.39 16 28 H 0.05 2.28 8.06 -2.39 -0.02 2.26 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.05 1.56 7.49 -2.39 -0.02 1.55 16 32 H 0.09 1.96 6.65 -2.39 -0.02 1.95 16 33 H 0.07 1.46 6.52 -2.39 -0.02 1.45 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.09 2.00 8.14 -2.38 -0.02 1.99 16 40 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.04 1.93 8.12 -2.39 -0.02 1.91 16 42 H 0.01 0.73 6.23 -2.38 -0.01 0.72 16 Total: -1.00 -66.89 315.34 0.87 -66.02 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.96 Total: 8.95 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 3.31 Total: -23.40 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -4.09 Total: -85.89 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -1.34 Total: -13.64 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -66.89 0.87 -66.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595788313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.413 kcal (2) G-P(sol) polarization free energy of solvation -66.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds