Wall clock time and date at job start Sun Mar 29 2020 23:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 115.55095 * 2 1 4 4 C 1.53001 * 117.49908 * 214.29497 * 2 1 3 5 5 C 1.53001 * 60.00212 * 252.50822 * 4 2 1 6 6 C 1.52998 * 117.50233 * 252.51185 * 5 4 2 7 7 N 1.46496 * 117.50084 * 107.48695 * 5 4 2 8 8 C 1.34774 * 120.00244 * 225.08642 * 7 5 4 9 9 O 1.21282 * 119.99865 * 4.61477 * 8 7 5 10 10 C 1.50702 * 120.00439 * 184.61362 * 8 7 5 11 11 C 1.52997 * 109.47549 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47296 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47296 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47210 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00150 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00158 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00274 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99712 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47433 * 89.99953 * 18 16 14 20 20 H 1.48500 * 109.47058 * 209.99678 * 18 16 14 21 21 H 1.48502 * 109.47243 * 329.99610 * 18 16 14 22 22 H 1.09003 * 109.46996 * 274.32679 * 1 2 3 23 23 H 1.08994 * 109.47149 * 34.33219 * 1 2 3 24 24 H 1.09001 * 109.47058 * 154.33030 * 1 2 3 25 25 H 1.08997 * 109.46990 * 205.66892 * 3 2 1 26 26 H 1.08993 * 109.46940 * 325.67503 * 3 2 1 27 27 H 1.09004 * 109.46966 * 85.67008 * 3 2 1 28 28 H 1.09002 * 117.50330 * 145.02384 * 4 2 1 29 29 H 1.08995 * 117.49950 * 359.97438 * 4 2 1 30 30 H 1.08992 * 109.47461 * 133.60579 * 6 5 4 31 31 H 1.08999 * 109.46935 * 253.61090 * 6 5 4 32 32 H 1.09009 * 109.46684 * 13.60809 * 6 5 4 33 33 H 0.96998 * 120.00302 * 45.08591 * 7 5 4 34 34 H 1.09001 * 109.46866 * 300.00251 * 10 8 7 35 35 H 1.09001 * 109.46786 * 59.99470 * 10 8 7 36 36 H 1.08999 * 109.46763 * 300.00085 * 11 10 8 37 37 H 1.08998 * 109.46984 * 59.99853 * 11 10 8 38 38 H 1.09001 * 109.46808 * 300.00102 * 12 11 10 39 39 H 1.09001 * 109.47098 * 59.99476 * 12 11 10 40 40 H 1.08999 * 109.46763 * 299.99858 * 13 12 11 41 41 H 1.08998 * 109.46984 * 59.99626 * 13 12 11 42 42 H 0.96994 * 119.99851 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1212 -0.7647 5 6 2.2365 -1.1208 0.7653 6 6 3.5490 -0.7755 1.4717 7 7 1.3962 -2.1118 1.4421 8 6 0.6253 -1.7427 2.4841 9 8 0.5628 -0.5758 2.8088 10 6 -0.1590 -2.7798 3.2459 11 6 -0.9432 -2.1016 4.3710 12 6 -1.7389 -3.1546 5.1448 13 6 -2.5227 -2.4765 6.2703 14 6 -3.3069 -3.5136 7.0320 15 1 -3.2515 -4.5527 6.7426 16 6 -4.0943 -3.1363 8.0990 17 7 -4.7791 -4.0413 8.7635 18 14 -4.1895 -1.3392 8.6000 19 1 -5.2996 -0.6791 7.8672 20 1 -4.4362 -1.2452 10.0613 21 1 -2.9083 -0.6648 8.2699 22 1 -0.3633 0.0775 1.0248 23 1 -0.3633 0.8486 -0.5796 24 1 -0.3633 -0.9263 -0.4452 25 1 3.1823 1.3087 -0.4451 26 1 1.5810 2.0742 -0.5795 27 1 2.2766 1.7417 1.0248 28 1 3.1716 -0.8756 -1.2680 29 1 1.6113 -1.8590 -1.2674 30 1 3.3550 -0.0569 2.2679 31 1 3.9819 -1.6810 1.8969 32 1 4.2453 -0.3426 0.7533 33 1 1.3946 -3.0336 1.1402 34 1 -0.8522 -3.2802 2.5697 35 1 0.5261 -3.5130 3.6717 36 1 -0.2496 -1.6016 5.0470 37 1 -1.6282 -1.3682 3.9455 38 1 -2.4324 -3.6550 4.4689 39 1 -1.0536 -3.8877 5.5702 40 1 -1.8288 -1.9764 6.9460 41 1 -3.2079 -1.7431 5.8451 42 1 -5.3333 -3.7758 9.5139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598386304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:43 Heat of formation + Delta-G solvation = -44.419606 kcal Electronic energy + Delta-G solvation = -18729.188440 eV Core-core repulsion = 15901.929295 eV Total energy + Delta-G solvation = -2827.259145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.41998 -38.17288 -34.97522 -33.55619 -32.51244 -30.51845 -29.80326 -28.19219 -27.04034 -25.89695 -22.54141 -21.13419 -20.38730 -20.00183 -18.55149 -16.83302 -16.54950 -16.14590 -15.78186 -14.91193 -14.32480 -14.14125 -14.04019 -13.76154 -13.39778 -12.91871 -12.65159 -12.62792 -12.46823 -12.28013 -12.10834 -12.03533 -11.97265 -11.72556 -11.29803 -11.07836 -10.71596 -10.52537 -10.40570 -10.00599 -9.87584 -9.73094 -9.62684 -9.35429 -9.10270 -8.95950 -8.48127 -5.99380 -3.96759 2.71993 2.99979 3.36359 3.38161 3.43293 3.49502 4.32930 4.42116 4.51292 4.61714 4.87061 4.90605 5.22015 5.29959 5.33129 5.36096 5.40567 5.42335 5.45934 5.53774 5.59342 5.73030 5.76551 5.79909 5.86724 5.94994 6.05108 6.08437 6.17677 6.25176 6.41672 6.51211 6.70483 6.84502 7.01022 7.39894 7.46765 7.52743 7.86254 8.31042 8.59751 9.05730 9.64099 11.14194 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.039951 B = 0.003539 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.690376 B = 7909.364713 C = 8156.826566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 C -0.113 4.113 4 C -0.173 4.173 5 C 0.103 3.897 6 C -0.120 4.120 7 N -0.709 5.709 8 C 0.515 3.485 9 O -0.525 6.525 10 C -0.139 4.139 11 C -0.105 4.105 12 C -0.103 4.103 13 C -0.015 4.015 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.907 5.907 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 H 0.079 0.921 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.400 0.600 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.514 5.909 -20.708 27.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.107 4.107 3 C -0.170 4.170 4 C -0.210 4.210 5 C 0.015 3.985 6 C -0.178 4.178 7 N -0.361 5.361 8 C 0.303 3.697 9 O -0.400 6.400 10 C -0.179 4.179 11 C -0.143 4.143 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 H 0.098 0.902 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.235 0.765 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.346 6.731 -20.287 26.908 hybrid contribution -0.155 0.244 0.144 0.323 sum 16.191 6.975 -20.144 26.769 Atomic orbital electron populations 1.21463 0.91675 1.01072 1.03643 1.21820 0.95492 0.91345 1.02034 1.21333 0.99431 0.93889 1.02366 1.23687 1.02868 1.01954 0.92511 1.20748 0.93104 0.94636 0.89995 1.21489 0.93697 1.01944 1.00688 1.45468 1.45115 1.11663 1.33862 1.21046 0.78690 0.90450 0.79510 1.90669 1.63506 1.19402 1.66469 1.21783 0.99577 0.97729 0.98845 1.21467 0.98620 0.98661 0.95526 1.21477 0.97959 0.96960 0.97637 1.19572 0.95247 0.96532 0.93908 1.21191 1.25970 0.95208 1.13349 0.91121 1.25044 0.95106 0.97374 0.96100 1.69921 1.29975 1.33464 1.21228 0.86772 0.79072 0.85965 0.77485 1.20309 1.21455 1.18901 0.90201 0.92556 0.93113 0.92588 0.92149 0.91670 0.88086 0.88543 0.91449 0.92045 0.91611 0.76514 0.89184 0.89061 0.91823 0.91844 0.92910 0.92878 0.96632 0.97077 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 8.86 37.16 0.33 -1.02 16 2 C -0.11 -1.05 2.42 -154.50 -0.37 -1.42 16 3 C -0.11 -1.00 8.86 37.16 0.33 -0.67 16 4 C -0.17 -1.34 9.39 -26.73 -0.25 -1.59 16 5 C 0.10 0.99 2.25 -131.82 -0.30 0.70 16 6 C -0.12 -1.09 9.12 37.16 0.34 -0.75 16 7 N -0.71 -7.07 5.07 -47.61 -0.24 -7.31 16 8 C 0.52 6.79 6.88 -10.99 -0.08 6.71 16 9 O -0.53 -8.82 13.66 5.56 0.08 -8.75 16 10 C -0.14 -1.77 5.70 -27.88 -0.16 -1.92 16 11 C -0.10 -1.77 4.50 -26.73 -0.12 -1.89 16 12 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 13 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16 14 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.57 13.96 55.43 0.77 -27.80 16 18 Si 0.88 22.50 27.47 -169.99 -4.67 17.83 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 22 H 0.08 1.12 5.55 -51.93 -0.29 0.83 16 23 H 0.06 0.56 7.92 -51.93 -0.41 0.15 16 24 H 0.05 0.53 7.90 -51.93 -0.41 0.11 16 25 H 0.06 0.40 7.59 -51.93 -0.39 0.01 16 26 H 0.06 0.50 7.92 -51.93 -0.41 0.08 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.10 0.64 7.99 -51.93 -0.41 0.22 16 29 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.47 7.57 -51.92 -0.39 0.08 16 33 H 0.40 2.90 8.83 -40.82 -0.36 2.54 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 37 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 41 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -33.40 336.78 -7.60 -41.00 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.65 Total: -1.81 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -0.96 Total: -18.24 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.53 Total: -35.11 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.08 Total: -8.75 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.67 Total: 17.83 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.40 -7.60 -41.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598386304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.420 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds