Wall clock time and date at job start Sun Mar 29 2020 23:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 112.84886 * 2 1 4 4 C 1.53790 * 113.61566 * 228.69532 * 2 1 3 5 5 C 1.53775 * 87.07946 * 220.01618 * 4 2 1 6 6 C 1.53773 * 113.61817 * 131.19813 * 2 1 3 7 7 H 1.09003 * 113.61658 * 25.43333 * 6 2 1 8 8 N 1.46505 * 113.61768 * 254.61431 * 6 2 1 9 9 C 1.34778 * 120.00329 * 154.99492 * 8 6 2 10 10 O 1.21286 * 119.99806 * 0.02562 * 9 8 6 11 11 C 1.50697 * 119.99919 * 180.02562 * 9 8 6 12 12 C 1.52996 * 109.46886 * 180.02562 * 11 9 8 13 13 C 1.53009 * 109.47247 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47247 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.46886 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00604 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99905 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99843 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99816 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47597 * 59.99837 * 19 17 15 21 21 H 1.48507 * 109.46857 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47195 * 299.99439 * 19 17 15 23 23 H 1.09002 * 109.47153 * 288.80152 * 1 2 3 24 24 H 1.09001 * 109.46832 * 168.80343 * 1 2 3 25 25 H 1.09004 * 109.47261 * 48.80324 * 1 2 3 26 26 H 1.08995 * 109.46975 * 69.66849 * 3 2 1 27 27 H 1.09005 * 109.46841 * 189.66742 * 3 2 1 28 28 H 1.09002 * 109.47267 * 309.66699 * 3 2 1 29 29 H 1.08995 * 113.61021 * 334.56688 * 4 2 1 30 30 H 1.08997 * 113.61084 * 105.46520 * 4 2 1 31 31 H 1.08998 * 113.61939 * 270.88180 * 5 4 2 32 32 H 1.08999 * 113.68872 * 139.98916 * 5 4 2 33 33 H 0.97000 * 119.99469 * 334.99855 * 8 6 2 34 34 H 1.09000 * 109.47049 * 300.00038 * 11 9 8 35 35 H 1.09004 * 109.46915 * 60.00491 * 11 9 8 36 36 H 1.09000 * 109.47268 * 299.99856 * 12 11 9 37 37 H 1.08998 * 109.47385 * 60.00597 * 12 11 9 38 38 H 1.09000 * 109.46895 * 300.00117 * 13 12 11 39 39 H 1.09002 * 109.46614 * 59.99573 * 13 12 11 40 40 H 1.09000 * 109.47268 * 299.99888 * 14 13 12 41 41 H 1.08997 * 109.46789 * 60.00160 * 14 13 12 42 42 H 0.97002 * 119.99761 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9301 -1.0585 5 6 3.1923 -1.3135 0.0012 6 6 2.1461 -0.9280 1.0601 7 1 1.4946 -1.7523 1.3506 8 7 2.7075 -0.2144 2.2099 9 6 2.8152 -0.8352 3.4013 10 8 2.4478 -1.9848 3.5216 11 6 3.3922 -0.1009 4.5841 12 6 3.4023 -1.0256 5.8029 13 6 3.9888 -0.2803 7.0037 14 6 3.9995 -1.2052 8.2224 15 6 4.5765 -0.4709 9.4051 16 1 4.9025 0.5531 9.2984 17 6 4.6881 -1.1065 10.6236 18 7 4.2906 -2.3533 10.7538 19 14 5.4027 -0.1961 12.0899 20 1 4.5717 0.9991 12.3835 21 1 5.4144 -1.0942 13.2725 22 1 6.7909 0.2304 11.7792 23 1 -0.3633 0.3312 0.9728 24 1 -0.3633 -1.0081 -0.1996 25 1 -0.3634 0.6769 -0.7733 26 1 1.9361 1.8834 0.9636 27 1 3.1988 1.3514 -0.1726 28 1 1.6607 1.9996 -0.7911 29 1 1.4945 -1.7548 -1.3473 30 1 2.5649 -0.4006 -1.9142 31 1 4.0711 -0.6686 0.0006 32 1 3.4454 -2.3737 0.0032 33 1 3.0017 0.7049 2.1136 34 1 4.4117 0.2106 4.3563 35 1 2.7833 0.7773 4.7988 36 1 2.3831 -1.3374 6.0309 37 1 4.0115 -1.9035 5.5880 38 1 5.0081 0.0312 6.7755 39 1 3.3800 0.5979 7.2188 40 1 2.9803 -1.5171 8.4508 41 1 4.6085 -2.0831 8.0069 42 1 4.3689 -2.8003 11.6111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805243622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:02 Heat of formation + Delta-G solvation = -77.441805 kcal Electronic energy + Delta-G solvation = -18358.677159 eV Core-core repulsion = 15529.986064 eV Total energy + Delta-G solvation = -2828.691095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.48634 -39.78715 -36.62661 -34.66967 -34.49537 -31.68829 -31.31921 -28.38076 -27.79085 -25.83212 -23.90392 -23.33584 -21.77931 -21.26154 -19.49187 -18.41932 -17.76220 -17.38409 -16.86550 -16.50497 -15.88491 -15.53799 -15.22871 -14.90504 -14.52009 -14.12890 -13.88352 -13.71370 -13.57487 -13.31800 -13.14663 -13.00296 -12.81079 -12.67183 -12.37335 -12.36628 -12.15840 -12.12542 -11.75139 -11.38031 -11.35438 -11.23743 -11.20278 -11.16515 -10.67126 -10.54509 -9.92646 -8.18563 -6.31075 1.40255 1.44566 1.52410 1.65363 2.26963 2.42445 3.13956 3.40662 3.62070 3.82626 3.86098 3.92845 4.06513 4.15163 4.28750 4.53183 4.60775 4.67399 4.69378 4.74347 4.81656 4.84030 4.88717 4.90064 4.99877 5.00962 5.12061 5.16052 5.19090 5.23747 5.33334 5.36676 5.43012 5.46495 5.56734 5.66314 5.77945 5.87906 6.25223 6.59889 6.87333 7.30975 7.38568 8.93632 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.055097 B = 0.002924 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.071673 B = 9572.969022 C = 9720.872383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 C -0.134 4.134 4 C -0.121 4.121 5 C -0.153 4.153 6 C 0.114 3.886 7 H 0.083 0.917 8 N -0.707 5.707 9 C 0.509 3.491 10 O -0.591 6.591 11 C -0.129 4.129 12 C -0.096 4.096 13 C -0.095 4.095 14 C 0.019 3.981 15 C -0.544 4.544 16 H 0.067 0.933 17 C -0.007 4.007 18 N -0.939 5.939 19 Si 0.970 3.030 20 H -0.264 1.264 21 H -0.285 1.285 22 H -0.264 1.264 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.415 0.585 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.061 0.939 39 H 0.061 0.939 40 H -0.016 1.016 41 H -0.016 1.016 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.976 10.464 -26.433 28.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.086 4.086 3 C -0.191 4.191 4 C -0.159 4.159 5 C -0.192 4.192 6 C 0.008 3.992 7 H 0.102 0.898 8 N -0.360 5.360 9 C 0.297 3.703 10 O -0.472 6.472 11 C -0.169 4.169 12 C -0.134 4.134 13 C -0.133 4.133 14 C -0.018 4.018 15 C -0.581 4.581 16 H 0.085 0.915 17 C -0.204 4.204 18 N -0.579 5.579 19 Si 0.794 3.206 20 H -0.189 1.189 21 H -0.211 1.211 22 H -0.189 1.189 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.254 0.746 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.254 9.532 -26.233 28.234 hybrid contribution 0.255 -0.112 1.113 1.148 sum -4.000 9.420 -25.120 27.125 Atomic orbital electron populations 1.21762 0.93738 1.02141 1.01913 1.22263 0.95823 0.95927 0.94577 1.21635 1.01325 0.93261 1.02924 1.22876 0.97421 0.99112 0.96515 1.23396 0.98176 1.01597 0.95988 1.22743 0.96411 0.96018 0.83991 0.89845 1.45967 1.63709 1.17423 1.08885 1.21262 0.77174 0.86610 0.85217 1.90684 1.51046 1.20154 1.85275 1.21685 1.04332 0.99636 0.91219 1.21243 1.00232 0.97888 0.94055 1.21452 1.00293 0.98145 0.93406 1.19049 0.94452 0.94676 0.93637 1.21739 1.41162 0.99491 0.95754 0.91510 1.26112 0.95968 0.95769 1.02579 1.70130 1.48889 1.13036 1.25844 0.85424 0.79301 0.78316 0.77534 1.18859 1.21058 1.18864 0.93398 0.92778 0.90853 0.91781 0.91256 0.90601 0.89775 0.89130 0.88728 0.92395 0.74593 0.86357 0.86390 0.93997 0.93990 0.92021 0.92027 0.99796 0.99782 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.19 71.98 0.66 -1.13 16 2 C -0.09 -1.07 1.37 -51.65 -0.07 -1.14 16 3 C -0.13 -1.16 8.00 71.98 0.58 -0.58 16 4 C -0.12 -1.41 7.21 31.12 0.22 -1.19 16 5 C -0.15 -2.41 7.53 31.12 0.23 -2.18 16 6 C 0.11 2.18 3.69 45.51 0.17 2.34 16 7 H 0.08 2.13 7.42 -2.39 -0.02 2.11 16 8 N -0.71 -13.82 5.23 -440.04 -2.30 -16.12 16 9 C 0.51 14.40 7.83 87.66 0.69 15.08 16 10 O -0.59 -23.04 15.58 -3.05 -0.05 -23.09 16 11 C -0.13 -3.29 5.70 29.85 0.17 -3.12 16 12 C -0.10 -3.58 4.50 30.60 0.14 -3.44 16 13 C -0.10 -3.97 5.15 30.60 0.16 -3.82 16 14 C 0.02 1.06 4.97 29.85 0.15 1.21 16 15 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 16 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 17 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 18 N -0.94 -59.76 13.29 21.45 0.28 -59.48 16 19 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 23 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 0.74 7.94 -2.39 -0.02 0.72 16 25 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.06 0.54 7.20 -2.39 -0.02 0.52 16 27 H 0.07 0.51 7.34 -2.38 -0.02 0.49 16 28 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 0.98 7.96 -2.39 -0.02 0.96 16 30 H 0.09 0.77 8.10 -2.39 -0.02 0.75 16 31 H 0.09 1.28 7.64 -2.39 -0.02 1.27 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.42 5.32 6.70 -92.71 -0.62 4.70 16 34 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.12 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 37 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 39 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 40 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 41 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 42 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -75.58 338.64 4.10 -71.49 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.35 Total: 9.66 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 3.79 Total: -29.60 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -2.02 Total: -75.60 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.05 Total: -23.09 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -75.58 4.10 -71.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805243622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.956 kcal (2) G-P(sol) polarization free energy of solvation -75.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds