Wall clock time and date at job start Sun Mar 29 2020 23:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99892 * 2 1 4 4 H 1.48504 * 109.47011 * 269.99998 * 3 2 1 5 5 H 1.48501 * 109.47363 * 29.99515 * 3 2 1 6 6 H 1.48500 * 109.47358 * 149.99946 * 3 2 1 7 7 C 1.37871 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00075 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00179 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47383 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.46878 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99673 * 183.00772 * 11 10 9 13 13 H 1.08995 * 109.46881 * 4.60003 * 12 11 10 14 14 C 1.53009 * 109.47111 * 244.60177 * 12 11 10 15 15 C 1.53778 * 113.61080 * 162.23715 * 14 12 11 16 16 C 1.53958 * 87.01747 * 220.04799 * 15 14 12 17 17 C 1.53780 * 113.61104 * 64.63182 * 14 12 11 18 18 C 1.52997 * 109.47060 * 124.60200 * 12 11 10 19 19 H 1.09000 * 110.27530 * 184.29912 * 18 12 11 20 20 C 1.54939 * 110.31024 * 306.39102 * 18 12 11 21 21 C 1.55415 * 100.89744 * 155.28922 * 20 18 12 22 22 C 1.54389 * 102.30461 * 325.99000 * 21 20 18 23 23 O 1.43232 * 107.58770 * 21.28384 * 22 21 20 24 24 H 0.97000 * 119.99859 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47246 * 59.99285 * 9 7 2 26 26 H 1.09000 * 109.47211 * 299.99723 * 9 7 2 27 27 H 1.09002 * 109.47046 * 59.99987 * 10 9 7 28 28 H 1.09002 * 109.46607 * 299.99654 * 10 9 7 29 29 H 1.00900 * 111.00269 * 59.05785 * 11 10 9 30 30 H 1.09001 * 112.84844 * 293.43440 * 14 12 11 31 31 H 1.08997 * 113.61717 * 334.56837 * 15 14 12 32 32 H 1.09007 * 113.61308 * 105.47160 * 15 14 12 33 33 H 1.09007 * 113.53616 * 270.81134 * 16 15 14 34 34 H 1.08997 * 113.74011 * 139.95044 * 16 15 14 35 35 H 1.09001 * 113.60990 * 254.52853 * 17 14 12 36 36 H 1.08992 * 113.61953 * 25.34785 * 17 14 12 37 37 H 1.09001 * 111.12540 * 273.27897 * 20 18 12 38 38 H 1.08997 * 111.12797 * 37.44182 * 20 18 12 39 39 H 1.08992 * 110.88610 * 207.75287 * 21 20 18 40 40 H 1.08995 * 110.93629 * 84.24830 * 21 20 18 41 41 H 1.08997 * 109.82928 * 261.77107 * 22 21 20 42 42 H 1.09005 * 109.90091 * 140.84275 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 2.4338 -6.0749 0.0731 13 1 3.4539 -5.7099 0.1920 14 6 2.3324 -6.8950 -1.2146 15 6 3.5271 -7.8364 -1.4409 16 6 3.4511 -7.4445 -2.9279 17 6 2.7931 -6.1328 -2.4682 18 6 2.0644 -6.9551 1.2688 19 1 2.7866 -7.7638 1.3799 20 6 2.0043 -6.1061 2.5634 21 6 1.0376 -6.9601 3.4303 22 6 0.0754 -7.5429 2.3729 23 8 0.7404 -7.4879 1.1055 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.9103 -5.0055 -0.8065 30 1 1.3643 -7.3823 -1.3310 31 1 4.4421 -7.5069 -0.9487 32 1 3.2982 -8.8854 -1.2527 33 1 2.7896 -8.0832 -3.5131 34 1 4.4259 -7.3038 -3.3949 35 1 1.9725 -5.8083 -3.1081 36 1 3.5059 -5.3357 -2.2572 37 1 2.9871 -6.0289 3.0286 38 1 1.5863 -5.1188 2.3668 39 1 0.4989 -6.3348 4.1422 40 1 1.5760 -7.7556 3.9452 41 1 -0.8381 -6.9493 2.3372 42 1 -0.1651 -8.5770 2.6199 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866337201.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:34 Heat of formation + Delta-G solvation = -43.702034 kcal Electronic energy + Delta-G solvation = -19526.814218 eV Core-core repulsion = 16699.586189 eV Total energy + Delta-G solvation = -2827.228029 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.80119 -38.27794 -35.34041 -32.95836 -31.75052 -30.74188 -28.30808 -26.39441 -25.44627 -23.85518 -22.88728 -21.40356 -20.57811 -20.12245 -19.06500 -16.67311 -16.25370 -15.81503 -15.55885 -15.12222 -14.60089 -14.40409 -13.74612 -13.64168 -13.02924 -12.89105 -12.60057 -12.34252 -12.18667 -11.92784 -11.60335 -11.36665 -11.23589 -11.10144 -11.01642 -10.89583 -10.58967 -10.49467 -10.34739 -10.26052 -10.05914 -9.81083 -9.43709 -9.14144 -9.02496 -8.32977 -7.61283 -5.97583 -4.00057 3.32640 3.38953 3.42003 4.09342 4.43513 4.59160 4.64598 4.79171 4.80750 4.92341 5.05512 5.12454 5.21942 5.38288 5.39871 5.51524 5.57694 5.65173 5.78532 5.81276 5.88011 5.90908 5.92926 5.96487 6.02812 6.09369 6.12420 6.22971 6.34121 6.37252 6.50253 6.63164 6.67824 7.03800 7.33228 7.60139 7.80449 7.87477 8.05490 8.15348 8.47102 9.07661 9.63606 11.13746 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.018577 B = 0.005638 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.879624 B = 4965.016569 C = 6021.543144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.066 3.934 11 N -0.676 5.676 12 C 0.097 3.903 13 H 0.070 0.930 14 C -0.120 4.120 15 C -0.134 4.134 16 C -0.141 4.141 17 C -0.140 4.140 18 C 0.098 3.902 19 H 0.058 0.942 20 C -0.148 4.148 21 C -0.155 4.155 22 C 0.057 3.943 23 O -0.370 6.370 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.024 0.976 27 H 0.054 0.946 28 H 0.014 0.986 29 H 0.340 0.660 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.950 -16.704 1.202 17.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.062 4.062 11 N -0.306 5.306 12 C -0.014 4.014 13 H 0.088 0.912 14 C -0.140 4.140 15 C -0.172 4.172 16 C -0.178 4.178 17 C -0.178 4.178 18 C 0.039 3.961 19 H 0.075 0.925 20 C -0.185 4.185 21 C -0.193 4.193 22 C -0.020 4.020 23 O -0.289 6.289 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.158 0.842 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.587 -16.619 1.697 17.324 hybrid contribution 0.879 1.031 -0.627 1.493 sum 5.466 -15.588 1.070 16.553 Atomic orbital electron populations 1.69978 1.06006 1.26507 1.50727 1.24993 0.94814 0.99141 0.95380 0.86618 0.79839 0.83615 0.78046 1.20730 1.21220 1.19935 1.21187 0.92910 0.91116 1.50738 0.92889 1.19036 0.94000 0.90344 0.97646 1.22255 0.96823 0.88874 0.98247 1.60518 1.21208 1.01060 1.47786 1.21675 0.95835 0.91264 0.92612 0.91187 1.23009 0.99195 0.97247 0.94512 1.22924 0.98493 0.99388 0.96416 1.22805 1.00688 0.97882 0.96440 1.22955 1.00652 0.96704 0.97484 1.22954 0.84598 0.93445 0.95067 0.92462 1.23285 0.99360 1.01621 0.94250 1.23084 0.98069 0.99570 0.98542 1.22974 0.96064 0.99360 0.83602 1.88363 1.27282 1.84577 1.28723 0.93040 0.96870 0.95800 0.92717 0.96782 0.84177 0.88332 0.90469 0.91771 0.90497 0.91854 0.91504 0.90137 0.91303 0.87743 0.90434 0.91602 0.91553 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.71 5.26 -27.88 -0.15 0.56 16 10 C 0.07 1.37 5.22 -3.82 -0.02 1.35 16 11 N -0.68 -11.94 5.05 -106.72 -0.54 -12.48 16 12 C 0.10 1.42 1.88 -67.71 -0.13 1.29 16 13 H 0.07 1.04 7.44 -51.93 -0.39 0.65 16 14 C -0.12 -1.57 2.71 -89.80 -0.24 -1.82 16 15 C -0.13 -1.49 7.59 -25.83 -0.20 -1.69 16 16 C -0.14 -1.53 8.09 -25.83 -0.21 -1.74 16 17 C -0.14 -1.82 7.31 -25.92 -0.19 -2.01 16 18 C 0.10 1.36 3.24 -25.71 -0.08 1.28 16 19 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 20 C -0.15 -2.05 6.51 -24.43 -0.16 -2.21 16 21 C -0.15 -1.84 7.02 -24.72 -0.17 -2.02 16 22 C 0.06 0.73 7.80 37.89 0.30 1.03 16 23 O -0.37 -5.60 10.26 -35.23 -0.36 -5.96 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 1.13 8.13 -51.93 -0.42 0.71 16 28 H 0.01 0.29 7.75 -51.93 -0.40 -0.12 16 29 H 0.34 6.15 7.96 -39.29 -0.31 5.84 16 30 H 0.10 1.39 7.67 -51.93 -0.40 1.00 16 31 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16 32 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.13 7.71 -51.93 -0.40 0.73 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.77 7.01 -51.93 -0.36 1.40 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -29.66 332.09 -9.56 -39.22 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.72 Total: 3.31 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -1.66 Total: -19.49 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.20 Total: -38.81 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.36 Total: -5.96 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.66 -9.56 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866337201.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.477 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds