Wall clock time and date at job start Sun Mar 29 2020 23:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99892 * 2 1 4 4 H 1.48504 * 109.47011 * 269.99998 * 3 2 1 5 5 H 1.48501 * 109.47363 * 29.99515 * 3 2 1 6 6 H 1.48500 * 109.47358 * 149.99946 * 3 2 1 7 7 C 1.37871 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00075 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00179 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47383 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.46878 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99673 * 183.00772 * 11 10 9 13 13 H 1.08995 * 109.46881 * 4.60003 * 12 11 10 14 14 C 1.53009 * 109.47111 * 244.60177 * 12 11 10 15 15 C 1.53778 * 113.61080 * 162.23715 * 14 12 11 16 16 C 1.53958 * 87.01747 * 220.04799 * 15 14 12 17 17 C 1.53780 * 113.61104 * 64.63182 * 14 12 11 18 18 C 1.52997 * 109.47060 * 124.60200 * 12 11 10 19 19 H 1.09000 * 110.27530 * 184.29912 * 18 12 11 20 20 C 1.54939 * 110.31024 * 306.39102 * 18 12 11 21 21 C 1.55415 * 100.89744 * 155.28922 * 20 18 12 22 22 C 1.54389 * 102.30461 * 325.99000 * 21 20 18 23 23 O 1.43232 * 107.58770 * 21.28384 * 22 21 20 24 24 H 0.97000 * 119.99859 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47246 * 59.99285 * 9 7 2 26 26 H 1.09000 * 109.47211 * 299.99723 * 9 7 2 27 27 H 1.09002 * 109.47046 * 59.99987 * 10 9 7 28 28 H 1.09002 * 109.46607 * 299.99654 * 10 9 7 29 29 H 1.00900 * 111.00269 * 59.05785 * 11 10 9 30 30 H 1.09001 * 112.84844 * 293.43440 * 14 12 11 31 31 H 1.08997 * 113.61717 * 334.56837 * 15 14 12 32 32 H 1.09007 * 113.61308 * 105.47160 * 15 14 12 33 33 H 1.09007 * 113.53616 * 270.81134 * 16 15 14 34 34 H 1.08997 * 113.74011 * 139.95044 * 16 15 14 35 35 H 1.09001 * 113.60990 * 254.52853 * 17 14 12 36 36 H 1.08992 * 113.61953 * 25.34785 * 17 14 12 37 37 H 1.09001 * 111.12540 * 273.27897 * 20 18 12 38 38 H 1.08997 * 111.12797 * 37.44182 * 20 18 12 39 39 H 1.08992 * 110.88610 * 207.75287 * 21 20 18 40 40 H 1.08995 * 110.93629 * 84.24830 * 21 20 18 41 41 H 1.08997 * 109.82928 * 261.77107 * 22 21 20 42 42 H 1.09005 * 109.90091 * 140.84275 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 2.4338 -6.0749 0.0731 13 1 3.4539 -5.7099 0.1920 14 6 2.3324 -6.8950 -1.2146 15 6 3.5271 -7.8364 -1.4409 16 6 3.4511 -7.4445 -2.9279 17 6 2.7931 -6.1328 -2.4682 18 6 2.0644 -6.9551 1.2688 19 1 2.7866 -7.7638 1.3799 20 6 2.0043 -6.1061 2.5634 21 6 1.0376 -6.9601 3.4303 22 6 0.0754 -7.5429 2.3729 23 8 0.7404 -7.4879 1.1055 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.9103 -5.0055 -0.8065 30 1 1.3643 -7.3823 -1.3310 31 1 4.4421 -7.5069 -0.9487 32 1 3.2982 -8.8854 -1.2527 33 1 2.7896 -8.0832 -3.5131 34 1 4.4259 -7.3038 -3.3949 35 1 1.9725 -5.8083 -3.1081 36 1 3.5059 -5.3357 -2.2572 37 1 2.9871 -6.0289 3.0286 38 1 1.5863 -5.1188 2.3668 39 1 0.4989 -6.3348 4.1422 40 1 1.5760 -7.7556 3.9452 41 1 -0.8381 -6.9493 2.3372 42 1 -0.1651 -8.5770 2.6199 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866337201.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:33 Heat of formation + Delta-G solvation = -61.286722 kcal Electronic energy + Delta-G solvation = -19527.576747 eV Core-core repulsion = 16699.586189 eV Total energy + Delta-G solvation = -2827.990558 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.90485 -39.30872 -36.89135 -34.95898 -32.84451 -32.32869 -29.88750 -27.65887 -26.46906 -25.65314 -24.00381 -22.64264 -22.21870 -21.27313 -20.13072 -18.50484 -17.72290 -16.89823 -16.83351 -16.43329 -16.21813 -15.69907 -15.16341 -15.00774 -14.43062 -14.21603 -13.95874 -13.82766 -13.34398 -13.17225 -12.99400 -12.87940 -12.64606 -12.53731 -12.39245 -12.23405 -12.09244 -11.91314 -11.61262 -11.44416 -11.35291 -11.29131 -11.07059 -10.92733 -10.55962 -10.24811 -9.05180 -8.19712 -6.31286 1.39669 1.41255 1.52327 2.40357 3.03131 3.13658 3.30744 3.61402 3.78763 3.81565 3.91156 4.01936 4.12435 4.17759 4.36846 4.41107 4.44749 4.55699 4.62231 4.69900 4.81088 4.87013 4.88522 4.93533 4.98112 5.00224 5.06463 5.07975 5.12193 5.13351 5.18925 5.37245 5.44526 5.53562 5.63076 5.70791 5.81968 6.16431 6.26237 6.42934 6.60376 6.86874 7.38080 8.92446 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.018577 B = 0.005638 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.879624 B = 4965.016569 C = 6021.543144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.090 3.910 11 N -0.679 5.679 12 C 0.097 3.903 13 H 0.072 0.928 14 C -0.120 4.120 15 C -0.124 4.124 16 C -0.131 4.131 17 C -0.148 4.148 18 C 0.099 3.901 19 H 0.081 0.919 20 C -0.152 4.152 21 C -0.147 4.147 22 C 0.050 3.950 23 O -0.390 6.390 24 H 0.263 0.737 25 H -0.014 1.014 26 H -0.009 1.009 27 H 0.056 0.944 28 H 0.016 0.984 29 H 0.335 0.665 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.829 -17.767 1.493 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.002 4.002 10 C -0.039 4.039 11 N -0.308 5.308 12 C -0.013 4.013 13 H 0.090 0.910 14 C -0.139 4.139 15 C -0.162 4.162 16 C -0.168 4.168 17 C -0.186 4.186 18 C 0.041 3.959 19 H 0.098 0.902 20 C -0.189 4.189 21 C -0.185 4.185 22 C -0.026 4.026 23 O -0.310 6.310 24 H 0.072 0.928 25 H 0.004 0.996 26 H 0.010 0.990 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.153 0.847 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.477 -17.705 1.992 18.957 hybrid contribution 0.231 1.334 -0.712 1.529 sum 6.708 -16.371 1.280 17.738 Atomic orbital electron populations 1.70121 1.07871 1.27720 1.51551 1.25974 0.95726 1.03360 0.94683 0.85439 0.78675 0.78383 0.78488 1.19774 1.20760 1.18634 1.21616 0.93472 0.92275 1.50715 0.92182 1.18872 0.94257 0.92380 0.94669 1.21827 0.95250 0.88534 0.98286 1.60442 1.21782 1.00987 1.47620 1.21767 0.95042 0.90315 0.94200 0.90984 1.22933 0.99769 0.97694 0.93498 1.22891 0.97469 0.99451 0.96345 1.22779 1.01158 0.96228 0.96640 1.22965 1.00371 0.97539 0.97686 1.23007 0.84767 0.93801 0.94326 0.90155 1.23239 1.00468 1.00075 0.95149 1.23073 0.97478 0.99852 0.98055 1.23115 0.95672 1.00620 0.83220 1.88337 1.27931 1.84640 1.30099 0.92814 0.99588 0.99048 0.92560 0.96565 0.84715 0.89406 0.89692 0.90566 0.89614 0.90720 0.92538 0.91320 0.89730 0.91423 0.90283 0.89067 0.92920 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 2 C 0.00 0.02 5.46 84.65 0.46 0.49 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.54 -31.35 9.11 25.60 0.23 -31.11 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.04 1.94 5.26 29.85 0.16 2.10 16 10 C 0.09 3.81 5.22 86.31 0.45 4.26 16 11 N -0.68 -24.65 5.05 -491.55 -2.48 -27.14 16 12 C 0.10 2.77 1.88 44.92 0.08 2.86 16 13 H 0.07 2.05 7.44 -2.39 -0.02 2.03 16 14 C -0.12 -3.01 2.71 -10.27 -0.03 -3.04 16 15 C -0.12 -2.43 7.59 31.18 0.24 -2.20 16 16 C -0.13 -2.57 8.09 31.18 0.25 -2.32 16 17 C -0.15 -3.75 7.31 31.12 0.23 -3.52 16 18 C 0.10 2.61 3.24 31.26 0.10 2.72 16 19 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 20 C -0.15 -4.07 6.51 32.09 0.21 -3.86 16 21 C -0.15 -3.25 7.02 31.90 0.22 -3.03 16 22 C 0.05 1.24 7.80 72.45 0.56 1.80 16 23 O -0.39 -11.45 10.26 -148.98 -1.53 -12.98 16 24 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 25 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 26 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H 0.06 2.36 8.13 -2.39 -0.02 2.34 16 28 H 0.02 0.68 7.75 -2.39 -0.02 0.66 16 29 H 0.34 12.65 7.96 -89.69 -0.71 11.94 16 30 H 0.09 2.44 7.67 -2.39 -0.02 2.42 16 31 H 0.08 1.57 8.03 -2.39 -0.02 1.55 16 32 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.90 7.71 -2.39 -0.02 1.88 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.07 2.34 7.01 -2.39 -0.02 2.32 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -64.80 332.09 1.73 -63.07 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.25 Total: 22.79 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 3.17 Total: -34.86 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -2.20 Total: -84.74 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -1.53 Total: -12.98 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -64.80 1.73 -63.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866337201.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.787 kcal (2) G-P(sol) polarization free energy of solvation -64.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds