Wall clock time and date at job start Sun Mar 29 2020 23:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 120.00255 * 2 1 4 4 H 1.48494 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46494 * 299.99826 * 3 2 1 6 6 H 1.48500 * 109.46916 * 59.99434 * 3 2 1 7 7 C 1.37874 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00665 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99875 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47163 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47080 * 180.02562 * 10 9 7 12 12 C 1.46897 * 111.00153 * 174.76068 * 11 10 9 13 13 H 1.09002 * 109.47120 * 329.65800 * 12 11 10 14 14 C 1.53004 * 109.47008 * 89.65379 * 12 11 10 15 15 C 1.53784 * 113.61273 * 283.01147 * 14 12 11 16 16 C 1.53961 * 87.01895 * 220.04677 * 15 14 12 17 17 C 1.53781 * 113.61522 * 185.40427 * 14 12 11 18 18 C 1.52996 * 109.47633 * 209.65434 * 12 11 10 19 19 H 1.09004 * 109.87122 * 298.99407 * 18 12 11 20 20 C 1.54103 * 109.87961 * 59.99829 * 18 12 11 21 21 C 1.54812 * 104.18888 * 121.45407 * 20 18 12 22 22 C 1.54999 * 102.08938 * 20.88585 * 21 20 18 23 23 O 1.43747 * 109.88313 * 177.83045 * 18 12 11 24 24 H 0.97003 * 120.00054 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46994 * 59.99677 * 9 7 2 26 26 H 1.09000 * 109.47120 * 300.00044 * 9 7 2 27 27 H 1.08996 * 109.47550 * 59.99869 * 10 9 7 28 28 H 1.09000 * 109.47017 * 299.99959 * 10 9 7 29 29 H 1.00892 * 111.00319 * 298.71570 * 11 10 9 30 30 H 1.08996 * 112.85077 * 54.20865 * 14 12 11 31 31 H 1.09002 * 113.61555 * 334.56536 * 15 14 12 32 32 H 1.08997 * 113.61284 * 105.46987 * 15 14 12 33 33 H 1.08994 * 113.53890 * 270.81359 * 16 15 14 34 34 H 1.09002 * 113.66566 * 139.92771 * 16 15 14 35 35 H 1.08999 * 113.61201 * 254.53294 * 17 14 12 36 36 H 1.09005 * 113.61433 * 25.42770 * 17 14 12 37 37 H 1.08997 * 110.49255 * 240.13430 * 20 18 12 38 38 H 1.09001 * 110.48410 * 2.78111 * 20 18 12 39 39 H 1.08999 * 110.90504 * 139.07974 * 21 20 18 40 40 H 1.08994 * 110.90857 * 262.65010 * 21 20 18 41 41 H 1.08995 * 110.62102 * 81.47417 * 22 21 20 42 42 H 1.09000 * 110.61577 * 204.47329 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5107 -4.9342 0.0012 12 6 2.4303 -6.0730 -0.1228 13 1 3.3055 -5.7723 -0.6989 14 6 2.8688 -6.5285 1.2705 15 6 3.9314 -5.6191 1.9098 16 6 4.6038 -6.9039 2.4273 17 6 3.9376 -7.6341 1.2492 18 6 1.7214 -7.2258 -0.8366 19 1 0.8549 -7.5437 -0.2567 20 6 1.2755 -6.7770 -2.2417 21 6 1.9820 -7.7678 -3.1986 22 6 2.2907 -8.9617 -2.2596 23 8 2.6294 -8.3269 -1.0079 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8712 -3.6040 0.8922 28 1 2.8726 -3.6047 -0.8877 29 1 0.9371 -5.0210 0.8266 30 1 2.0278 -6.7469 1.9286 31 1 4.5335 -5.0734 1.1833 32 1 3.5402 -4.9805 2.7018 33 1 4.2377 -7.2242 3.4027 34 1 5.6920 -6.8824 2.3685 35 1 3.5513 -8.6198 1.5086 36 1 4.5413 -7.6404 0.3416 37 1 0.1930 -6.8560 -2.3419 38 1 1.6042 -5.7565 -2.4385 39 1 1.3158 -8.0705 -4.0064 40 1 2.9010 -7.3368 -3.5957 41 1 1.4117 -9.5956 -2.1430 42 1 3.1343 -9.5392 -2.6377 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866337202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:37 Heat of formation + Delta-G solvation = -43.925424 kcal Electronic energy + Delta-G solvation = -19482.373634 eV Core-core repulsion = 16655.135918 eV Total energy + Delta-G solvation = -2827.237715 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.91649 -38.27351 -35.42039 -33.02353 -31.84803 -30.77966 -28.27426 -26.26686 -25.30021 -24.00701 -22.82605 -21.50515 -20.73876 -20.23288 -19.08715 -16.43220 -16.22873 -16.03762 -15.39795 -15.18903 -14.97586 -14.42622 -13.59096 -13.48464 -13.33664 -13.17418 -12.46871 -12.21782 -12.11967 -11.91205 -11.57491 -11.29483 -11.25909 -11.08173 -11.05560 -10.92548 -10.56159 -10.50076 -10.42255 -10.25422 -10.04789 -9.80245 -9.61045 -9.24569 -9.09586 -8.33883 -7.67587 -5.98484 -4.00679 3.31735 3.39201 3.43187 3.85361 4.46265 4.66606 4.75707 4.77388 4.86850 4.97039 5.02502 5.05366 5.21085 5.34583 5.37777 5.40852 5.56729 5.71084 5.72407 5.77980 5.87273 5.91629 5.96010 6.01112 6.09732 6.13396 6.18148 6.24138 6.35828 6.45622 6.48566 6.51623 6.68804 7.02489 7.06310 7.52843 7.76555 7.84207 7.99624 8.11512 8.45960 9.07145 9.63156 11.12982 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.022454 B = 0.005108 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.715040 B = 5479.887453 C = 6354.585837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.068 3.932 11 N -0.682 5.682 12 C 0.100 3.900 13 H 0.077 0.923 14 C -0.135 4.135 15 C -0.134 4.134 16 C -0.149 4.149 17 C -0.111 4.111 18 C 0.091 3.909 19 H 0.062 0.938 20 C -0.137 4.137 21 C -0.159 4.159 22 C 0.046 3.954 23 O -0.370 6.370 24 H 0.259 0.741 25 H 0.023 0.977 26 H 0.013 0.987 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.337 0.663 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.186 -17.554 -1.255 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.060 4.060 11 N -0.312 5.312 12 C -0.011 4.011 13 H 0.095 0.905 14 C -0.154 4.154 15 C -0.172 4.172 16 C -0.186 4.186 17 C -0.150 4.150 18 C 0.033 3.967 19 H 0.080 0.920 20 C -0.175 4.175 21 C -0.196 4.196 22 C -0.031 4.031 23 O -0.289 6.289 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.031 0.969 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.155 0.845 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.063 -17.457 -1.795 18.265 hybrid contribution 0.549 1.040 0.755 1.398 sum 5.612 -16.417 -1.039 17.381 Atomic orbital electron populations 1.69983 1.06018 1.26408 1.50875 1.24990 0.94809 0.99156 0.95365 0.86563 0.80112 0.83917 0.77567 1.19782 1.21005 1.21054 1.21219 0.92981 0.91054 1.50569 0.92791 1.19053 0.94044 0.90389 0.97627 1.22213 0.96850 0.88150 0.98792 1.60471 1.23424 1.01610 1.45712 1.21614 0.94967 0.90520 0.93964 0.90455 1.23200 0.97208 0.97515 0.97522 1.22970 0.97858 0.96054 1.00306 1.22928 0.99609 0.97598 0.98474 1.22672 0.97249 0.97126 0.97908 1.22610 0.91519 0.86404 0.96191 0.92021 1.22815 1.00628 1.00855 0.93203 1.23171 1.01305 0.96561 0.98604 1.23490 1.00124 0.95177 0.84345 1.88886 1.56612 1.44455 1.38940 0.93096 0.95814 0.96865 0.95937 0.92746 0.84550 0.89809 0.90149 0.91675 0.90837 0.92030 0.92050 0.89908 0.91083 0.89260 0.90792 0.90876 0.92720 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.68 5.28 -27.88 -0.15 0.53 16 10 C 0.07 1.40 5.33 -3.82 -0.02 1.38 16 11 N -0.68 -11.72 5.65 -106.73 -0.60 -12.32 16 12 C 0.10 1.47 1.54 -67.71 -0.10 1.37 16 13 H 0.08 1.24 7.56 -51.93 -0.39 0.85 16 14 C -0.13 -1.82 3.08 -89.80 -0.28 -2.10 16 15 C -0.13 -1.86 5.97 -25.82 -0.15 -2.01 16 16 C -0.15 -1.77 8.09 -25.82 -0.21 -1.98 16 17 C -0.11 -1.39 5.86 -25.92 -0.15 -1.54 16 18 C 0.09 1.23 3.17 -26.16 -0.08 1.14 16 19 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 20 C -0.14 -1.79 6.35 -25.20 -0.16 -1.95 16 21 C -0.16 -1.69 7.15 -24.72 -0.18 -1.87 16 22 C 0.05 0.47 7.72 38.21 0.29 0.77 16 23 O -0.37 -4.82 8.80 -35.23 -0.31 -5.13 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.02 0.46 6.35 -51.93 -0.33 0.13 16 28 H 0.05 1.14 7.92 -51.93 -0.41 0.73 16 29 H 0.34 5.68 8.44 -39.30 -0.33 5.35 16 30 H 0.08 1.13 8.11 -51.93 -0.42 0.71 16 31 H 0.08 1.18 7.84 -51.93 -0.41 0.77 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.09 7.61 -51.93 -0.40 0.69 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.35 7.46 -51.93 -0.39 0.97 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 327.73 15.07 4.94 4.94 Total: -1.00 -29.33 327.73 -9.55 -38.88 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.69 Total: 2.87 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -1.60 Total: -19.71 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.13 Total: -38.56 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.31 Total: -5.13 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.33 -9.55 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866337202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.049 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds