Wall clock time and date at job start Sun Mar 29 2020 23:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 112.95046 * 2 1 4 4 C 1.54321 * 113.65574 * 228.60196 * 2 1 3 5 5 H 1.09002 * 114.80470 * 104.26823 * 4 2 1 6 6 C 1.52615 * 86.44788 * 219.01351 * 4 2 1 7 7 H 1.08999 * 111.15857 * 274.26766 * 6 4 2 8 8 C 1.50815 * 117.62547 * 144.14511 * 6 4 2 9 9 C 1.51832 * 113.74256 * 329.88100 * 8 6 4 10 10 C 1.52638 * 110.79909 * 44.72777 * 9 8 6 11 11 N 1.46803 * 108.93100 * 297.11703 * 10 9 8 12 12 C 1.46906 * 111.00104 * 189.19594 * 11 10 9 13 13 C 1.52997 * 109.46848 * 66.04538 * 12 11 10 14 14 C 1.50706 * 109.47203 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99617 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00090 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00061 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99728 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47167 * 90.00414 * 18 16 14 20 20 H 1.48504 * 109.47273 * 210.00001 * 18 16 14 21 21 H 1.48501 * 109.47513 * 330.00244 * 18 16 14 22 22 C 1.53279 * 87.63856 * 26.61443 * 6 4 2 23 23 H 1.09000 * 113.73538 * 218.95090 * 22 6 4 24 24 O 1.42903 * 113.73375 * 87.67140 * 22 6 4 25 25 H 1.09005 * 109.46828 * 308.10676 * 1 2 3 26 26 H 1.09005 * 109.46872 * 68.10388 * 1 2 3 27 27 H 1.08999 * 109.47578 * 188.10980 * 1 2 3 28 28 H 1.08997 * 109.47268 * 171.89557 * 3 2 1 29 29 H 1.09005 * 109.47032 * 291.89441 * 3 2 1 30 30 H 1.09000 * 109.46902 * 51.89358 * 3 2 1 31 31 H 1.09000 * 108.63412 * 208.77652 * 8 6 4 32 32 H 1.08998 * 108.51922 * 90.90333 * 8 6 4 33 33 H 1.09000 * 109.21163 * 284.38764 * 9 8 6 34 34 H 1.08997 * 109.17246 * 165.04482 * 9 8 6 35 35 H 1.08999 * 109.56044 * 177.28601 * 10 9 8 36 36 H 1.08998 * 109.56145 * 56.95245 * 10 9 8 37 37 H 1.08998 * 109.47121 * 186.04372 * 12 11 10 38 38 H 1.09000 * 109.47141 * 306.04570 * 12 11 10 39 39 H 1.08998 * 109.47584 * 300.00097 * 13 12 11 40 40 H 1.09005 * 109.46901 * 60.00396 * 13 12 11 41 41 H 0.97010 * 119.99768 * 180.02562 * 17 16 14 42 42 H 0.96704 * 113.99770 * 79.50777 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1266 1.4088 0.0000 4 6 2.1492 -0.9348 -1.0603 5 1 2.5561 -0.4277 -1.9353 6 6 3.1954 -1.2827 -0.0051 7 1 4.0159 -0.5653 -0.0130 8 6 3.7049 -2.7017 0.0333 9 6 2.6864 -3.7296 -0.4264 10 6 1.9809 -3.2629 -1.6970 11 7 1.2363 -2.0322 -1.4036 12 6 0.3674 -1.6617 -2.5287 13 6 -0.7268 -2.7177 -2.6972 14 6 -1.6187 -2.3374 -3.8509 15 1 -1.4241 -1.4331 -4.4085 16 6 -2.6822 -3.1443 -4.1953 17 7 -2.9188 -4.2456 -3.5166 18 14 -3.7872 -2.6732 -5.6259 19 1 -3.2536 -3.2646 -6.8791 20 1 -5.1592 -3.1862 -5.3815 21 1 -3.8272 -1.1943 -5.7543 22 6 2.1478 -0.9325 1.0576 23 1 2.5569 -0.4069 1.9205 24 8 1.3062 -2.0294 1.4191 25 1 -0.3633 0.6342 0.8087 26 1 -0.3633 0.3833 -0.9536 27 1 -0.3634 -1.0173 0.1450 28 1 3.2051 1.3467 0.1449 29 1 1.9154 1.8928 -0.9536 30 1 1.6843 1.9906 0.8086 31 1 4.0011 -2.9379 1.0553 32 1 4.5837 -2.7714 -0.6078 33 1 1.9469 -3.8785 0.3604 34 1 3.1945 -4.6733 -0.6243 35 1 1.2902 -4.0352 -2.0355 36 1 2.7200 -3.0660 -2.4735 37 1 -0.0904 -0.6926 -2.3304 38 1 0.9600 -1.6037 -3.4417 39 1 -0.2691 -3.6869 -2.8954 40 1 -1.3195 -2.7756 -1.7841 41 1 -3.6669 -4.8136 -3.7592 42 1 1.7129 -2.6491 2.0402 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872255167.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:27 Heat of formation + Delta-G solvation = -28.051931 kcal Electronic energy + Delta-G solvation = -20456.421257 eV Core-core repulsion = 17629.871868 eV Total energy + Delta-G solvation = -2826.549389 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89494 -36.13908 -34.71168 -33.90064 -32.44596 -29.72195 -29.10226 -27.09317 -25.73646 -24.52997 -22.92990 -22.15514 -20.05808 -18.99575 -17.98306 -16.75102 -16.31652 -15.36438 -15.00408 -14.66508 -14.50497 -14.35017 -13.63755 -13.35104 -12.89176 -12.75937 -12.47032 -12.20431 -11.96990 -11.92880 -11.76552 -11.51440 -11.12579 -10.96196 -10.84638 -10.74496 -10.55514 -10.46140 -10.32179 -9.90671 -9.73077 -9.52401 -9.15596 -9.03995 -8.99334 -8.25159 -7.42502 -5.92812 -3.94577 3.35706 3.41857 3.45320 4.21132 4.37695 4.53689 4.72941 4.75059 5.05939 5.13916 5.27441 5.36184 5.42923 5.47459 5.55702 5.64055 5.75216 5.83346 5.86844 5.98480 6.06255 6.11354 6.14751 6.20874 6.27496 6.33738 6.37614 6.48550 6.59308 6.61846 6.74068 6.83967 7.13515 7.21368 7.69687 7.76650 7.93000 8.00301 8.05659 8.21167 8.52822 9.13119 9.68467 11.18490 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.028125 B = 0.006067 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.317270 B = 4613.935043 C = 5055.335353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 C -0.127 4.127 4 C 0.079 3.921 5 H 0.043 0.957 6 C -0.139 4.139 7 H 0.083 0.917 8 C -0.098 4.098 9 C -0.113 4.113 10 C 0.058 3.942 11 N -0.498 5.498 12 C 0.060 3.940 13 C 0.032 3.968 14 C -0.520 4.520 15 H 0.052 0.948 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.106 3.894 23 H 0.052 0.948 24 O -0.515 6.515 25 H 0.036 0.964 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.017 0.983 37 H 0.065 0.935 38 H 0.012 0.988 39 H 0.015 0.985 40 H 0.026 0.974 41 H 0.259 0.741 42 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.567 6.136 9.783 17.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.074 4.074 3 C -0.185 4.185 4 C -0.031 4.031 5 H 0.061 0.939 6 C -0.158 4.158 7 H 0.102 0.898 8 C -0.135 4.135 9 C -0.150 4.150 10 C -0.070 4.070 11 N -0.221 5.221 12 C -0.067 4.067 13 C -0.005 4.005 14 C -0.559 4.559 15 H 0.070 0.930 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.046 3.954 23 H 0.070 0.930 24 O -0.318 6.318 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.035 0.965 37 H 0.084 0.916 38 H 0.030 0.970 39 H 0.033 0.967 40 H 0.044 0.956 41 H 0.069 0.931 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 12.728 6.200 9.788 17.212 hybrid contribution 0.417 0.151 -1.269 1.345 sum 13.145 6.350 8.519 16.903 Atomic orbital electron populations 1.21536 0.92532 1.03952 0.99918 1.22088 0.97473 0.92698 0.95190 1.21582 0.99903 0.94844 1.02129 1.22548 0.92498 0.93320 0.94687 0.93950 1.22536 0.96909 0.97365 0.99017 0.89842 1.20526 0.98374 0.94194 1.00448 1.21276 0.97877 0.96629 0.99258 1.21911 0.96084 0.93872 0.95096 1.62002 1.18748 1.01433 1.39942 1.22465 0.94608 1.01209 0.88398 1.19054 0.91828 0.92836 0.96827 1.21216 1.11868 1.07861 1.14931 0.92976 1.24972 0.97557 0.95090 0.96638 1.69979 1.29800 1.13322 1.40114 0.86637 0.80083 0.78691 0.82823 1.20801 1.21234 1.19944 1.22508 0.90565 0.88664 0.93671 0.93016 1.86709 1.41374 1.37195 1.66481 0.94528 0.93009 0.89169 0.92870 0.92018 0.92326 0.92724 0.93209 0.90131 0.92745 0.89600 0.96461 0.91626 0.96997 0.96694 0.95602 0.93102 0.79058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.04 7.62 37.16 0.28 -1.76 16 2 C -0.07 -1.05 1.35 -153.37 -0.21 -1.26 16 3 C -0.13 -1.45 9.10 37.15 0.34 -1.11 16 4 C 0.08 1.24 3.04 -67.26 -0.20 1.04 16 5 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 6 C -0.14 -1.76 3.47 -91.81 -0.32 -2.08 16 7 H 0.08 0.93 7.25 -51.93 -0.38 0.56 16 8 C -0.10 -1.17 5.30 -28.42 -0.15 -1.32 16 9 C -0.11 -1.59 5.58 -27.51 -0.15 -1.74 16 10 C 0.06 1.03 5.30 -4.06 -0.02 1.01 16 11 N -0.50 -9.27 2.62 -226.43 -0.59 -9.86 16 12 C 0.06 1.31 4.39 -3.82 -0.02 1.30 16 13 C 0.03 0.85 4.92 -27.88 -0.14 0.71 16 14 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 18 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.11 1.36 4.58 -26.10 -0.12 1.24 16 23 H 0.05 0.58 8.11 -51.93 -0.42 0.16 16 24 O -0.51 -7.27 9.24 -35.23 -0.33 -7.59 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.91 6.34 -51.93 -0.33 0.58 16 27 H 0.09 1.78 6.44 -51.93 -0.33 1.45 16 28 H 0.05 0.53 7.05 -51.93 -0.37 0.16 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.18 6.18 -51.93 -0.32 0.86 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.73 6.12 -51.93 -0.32 1.41 16 36 H 0.02 0.30 8.13 -51.93 -0.42 -0.12 16 37 H 0.07 1.44 5.54 -51.93 -0.29 1.15 16 38 H 0.01 0.26 8.12 -51.93 -0.42 -0.16 16 39 H 0.01 0.42 6.38 -51.93 -0.33 0.09 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.36 3.71 8.56 45.56 0.39 4.10 16 LS Contribution 310.55 15.07 4.68 4.68 Total: -1.00 -31.12 310.55 -8.10 -39.22 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.46 Total: 0.83 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -1.12 Total: -17.73 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.14 Total: -36.45 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.33 Total: -7.59 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.12 -8.10 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872255167.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.164 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds