Wall clock time and date at job start Sun Mar 29 2020 23:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 112.95046 * 2 1 4 4 C 1.54321 * 113.65574 * 228.60196 * 2 1 3 5 5 H 1.09002 * 114.80470 * 104.26823 * 4 2 1 6 6 C 1.52615 * 86.44788 * 219.01351 * 4 2 1 7 7 H 1.08999 * 111.15857 * 274.26766 * 6 4 2 8 8 C 1.50815 * 117.62547 * 144.14511 * 6 4 2 9 9 C 1.51832 * 113.74256 * 329.88100 * 8 6 4 10 10 C 1.52638 * 110.79909 * 44.72777 * 9 8 6 11 11 N 1.46803 * 108.93100 * 297.11703 * 10 9 8 12 12 C 1.46906 * 111.00104 * 189.19594 * 11 10 9 13 13 C 1.52997 * 109.46848 * 66.04538 * 12 11 10 14 14 C 1.50706 * 109.47203 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99617 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00090 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00061 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99728 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47167 * 90.00414 * 18 16 14 20 20 H 1.48504 * 109.47273 * 210.00001 * 18 16 14 21 21 H 1.48501 * 109.47513 * 330.00244 * 18 16 14 22 22 C 1.53279 * 87.63856 * 26.61443 * 6 4 2 23 23 H 1.09000 * 113.73538 * 218.95090 * 22 6 4 24 24 O 1.42903 * 113.73375 * 87.67140 * 22 6 4 25 25 H 1.09005 * 109.46828 * 308.10676 * 1 2 3 26 26 H 1.09005 * 109.46872 * 68.10388 * 1 2 3 27 27 H 1.08999 * 109.47578 * 188.10980 * 1 2 3 28 28 H 1.08997 * 109.47268 * 171.89557 * 3 2 1 29 29 H 1.09005 * 109.47032 * 291.89441 * 3 2 1 30 30 H 1.09000 * 109.46902 * 51.89358 * 3 2 1 31 31 H 1.09000 * 108.63412 * 208.77652 * 8 6 4 32 32 H 1.08998 * 108.51922 * 90.90333 * 8 6 4 33 33 H 1.09000 * 109.21163 * 284.38764 * 9 8 6 34 34 H 1.08997 * 109.17246 * 165.04482 * 9 8 6 35 35 H 1.08999 * 109.56044 * 177.28601 * 10 9 8 36 36 H 1.08998 * 109.56145 * 56.95245 * 10 9 8 37 37 H 1.08998 * 109.47121 * 186.04372 * 12 11 10 38 38 H 1.09000 * 109.47141 * 306.04570 * 12 11 10 39 39 H 1.08998 * 109.47584 * 300.00097 * 13 12 11 40 40 H 1.09005 * 109.46901 * 60.00396 * 13 12 11 41 41 H 0.97010 * 119.99768 * 180.02562 * 17 16 14 42 42 H 0.96704 * 113.99770 * 79.50777 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1266 1.4088 0.0000 4 6 2.1492 -0.9348 -1.0603 5 1 2.5561 -0.4277 -1.9353 6 6 3.1954 -1.2827 -0.0051 7 1 4.0159 -0.5653 -0.0130 8 6 3.7049 -2.7017 0.0333 9 6 2.6864 -3.7296 -0.4264 10 6 1.9809 -3.2629 -1.6970 11 7 1.2363 -2.0322 -1.4036 12 6 0.3674 -1.6617 -2.5287 13 6 -0.7268 -2.7177 -2.6972 14 6 -1.6187 -2.3374 -3.8509 15 1 -1.4241 -1.4331 -4.4085 16 6 -2.6822 -3.1443 -4.1953 17 7 -2.9188 -4.2456 -3.5166 18 14 -3.7872 -2.6732 -5.6259 19 1 -3.2536 -3.2646 -6.8791 20 1 -5.1592 -3.1862 -5.3815 21 1 -3.8272 -1.1943 -5.7543 22 6 2.1478 -0.9325 1.0576 23 1 2.5569 -0.4069 1.9205 24 8 1.3062 -2.0294 1.4191 25 1 -0.3633 0.6342 0.8087 26 1 -0.3633 0.3833 -0.9536 27 1 -0.3634 -1.0173 0.1450 28 1 3.2051 1.3467 0.1449 29 1 1.9154 1.8928 -0.9536 30 1 1.6843 1.9906 0.8086 31 1 4.0011 -2.9379 1.0553 32 1 4.5837 -2.7714 -0.6078 33 1 1.9469 -3.8785 0.3604 34 1 3.1945 -4.6733 -0.6243 35 1 1.2902 -4.0352 -2.0355 36 1 2.7200 -3.0660 -2.4735 37 1 -0.0904 -0.6926 -2.3304 38 1 0.9600 -1.6037 -3.4417 39 1 -0.2691 -3.6869 -2.8954 40 1 -1.3195 -2.7756 -1.7841 41 1 -3.6669 -4.8136 -3.7592 42 1 1.7129 -2.6491 2.0402 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872255167.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:26 Heat of formation + Delta-G solvation = -48.412862 kcal Electronic energy + Delta-G solvation = -20457.304173 eV Core-core repulsion = 17629.871868 eV Total energy + Delta-G solvation = -2827.432305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.04190 -37.57150 -35.80111 -35.54960 -34.29221 -31.06224 -30.86255 -28.25595 -27.14990 -26.16374 -24.34676 -23.54163 -21.85158 -20.14423 -19.21729 -18.44661 -17.82345 -16.56855 -16.52809 -16.32858 -16.04241 -15.55092 -15.08245 -14.62356 -14.40612 -14.22075 -13.78192 -13.72500 -13.42879 -13.13928 -13.04054 -12.94691 -12.78751 -12.59807 -12.45740 -12.09874 -11.98610 -11.81513 -11.66280 -11.62059 -11.30015 -11.29457 -10.82437 -10.56469 -10.46159 -10.13262 -8.92380 -8.20331 -6.31988 1.37451 1.39665 1.50798 2.39036 3.03875 3.12359 3.29490 3.61809 3.68477 3.94019 4.03508 4.22060 4.28759 4.36092 4.44317 4.48483 4.58601 4.62193 4.73015 4.76812 4.85904 4.89644 4.95585 5.00790 5.08295 5.10008 5.17340 5.21375 5.25193 5.27192 5.36962 5.45068 5.49624 5.65289 5.75292 5.76639 5.87125 6.16250 6.42638 6.52926 6.85237 7.18784 7.36789 8.91823 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.028125 B = 0.006067 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.317270 B = 4613.935043 C = 5055.335353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.079 4.079 3 C -0.121 4.121 4 C 0.059 3.941 5 H 0.035 0.965 6 C -0.126 4.126 7 H 0.113 0.887 8 C -0.095 4.095 9 C -0.106 4.106 10 C 0.056 3.944 11 N -0.502 5.502 12 C 0.079 3.921 13 C 0.046 3.954 14 C -0.546 4.546 15 H 0.056 0.944 16 C 0.002 3.998 17 N -0.930 5.930 18 Si 0.966 3.034 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.264 1.264 22 C 0.110 3.890 23 H 0.084 0.916 24 O -0.542 6.542 25 H 0.050 0.950 26 H 0.030 0.970 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.063 0.937 38 H 0.004 0.996 39 H -0.010 1.010 40 H -0.011 1.011 41 H 0.264 0.736 42 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.396 7.568 10.573 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.079 4.079 3 C -0.178 4.178 4 C -0.050 4.050 5 H 0.053 0.947 6 C -0.145 4.145 7 H 0.131 0.869 8 C -0.133 4.133 9 C -0.143 4.143 10 C -0.072 4.072 11 N -0.225 5.225 12 C -0.049 4.049 13 C 0.009 3.991 14 C -0.585 4.585 15 H 0.074 0.926 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.188 1.188 22 C 0.051 3.949 23 H 0.102 0.898 24 O -0.348 6.348 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.081 0.919 38 H 0.022 0.978 39 H 0.008 0.992 40 H 0.007 0.993 41 H 0.072 0.928 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 14.582 7.633 10.595 19.575 hybrid contribution -0.181 -0.336 -1.498 1.546 sum 14.401 7.297 9.097 18.531 Atomic orbital electron populations 1.21401 0.95076 1.01652 0.99243 1.22246 0.95476 0.94695 0.95509 1.21555 1.01279 0.92622 1.02372 1.22778 0.93754 0.92874 0.95619 0.94671 1.22564 0.96746 0.98580 0.96617 0.86940 1.20520 0.97516 0.92828 1.02404 1.21223 0.98175 0.98181 0.96742 1.21919 0.95293 0.92658 0.97372 1.61924 1.19920 1.02901 1.37763 1.22057 0.93980 0.99240 0.89619 1.18810 0.92490 0.93195 0.94605 1.21624 1.12818 1.08261 1.15754 0.92606 1.25957 0.99120 0.94798 0.99677 1.70122 1.30546 1.14450 1.41919 0.85440 0.77760 0.78875 0.78917 1.19657 1.20478 1.18818 1.22559 0.89868 0.88056 0.94423 0.89842 1.86687 1.42703 1.38158 1.67260 0.93070 0.95067 0.92875 0.90443 0.92662 0.91049 0.89603 0.92234 0.90884 0.91297 0.93485 0.96555 0.91866 0.97813 0.99191 0.99251 0.92752 0.77148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.96 7.62 71.98 0.55 -3.41 16 2 C -0.08 -2.11 1.35 -51.44 -0.07 -2.18 16 3 C -0.12 -2.39 9.10 71.98 0.66 -1.73 16 4 C 0.06 1.79 3.04 45.25 0.14 1.93 16 5 H 0.04 1.13 8.07 -2.39 -0.02 1.11 16 6 C -0.13 -2.76 3.47 -11.56 -0.04 -2.80 16 7 H 0.11 1.90 7.25 -2.39 -0.02 1.89 16 8 C -0.10 -1.95 5.30 29.50 0.16 -1.79 16 9 C -0.11 -2.87 5.58 30.09 0.17 -2.70 16 10 C 0.06 2.04 5.30 86.20 0.46 2.50 16 11 N -0.50 -19.37 2.62 -870.29 -2.28 -21.65 16 12 C 0.08 3.66 4.39 86.30 0.38 4.04 16 13 C 0.05 2.65 4.92 29.85 0.15 2.80 16 14 C -0.55 -32.91 9.11 25.60 0.23 -32.67 16 15 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 16 C 0.00 0.15 5.46 84.65 0.46 0.61 16 17 N -0.93 -58.91 13.29 21.44 0.28 -58.62 16 18 Si 0.97 45.91 29.54 68.60 2.03 47.94 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 22 C 0.11 2.50 4.58 31.00 0.14 2.64 16 23 H 0.08 1.43 8.11 -2.39 -0.02 1.41 16 24 O -0.54 -14.59 9.24 -148.98 -1.38 -15.97 16 25 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.03 1.14 6.34 -2.38 -0.02 1.13 16 27 H 0.05 2.19 6.44 -2.39 -0.02 2.18 16 28 H 0.08 1.17 7.05 -2.39 -0.02 1.15 16 29 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.07 2.10 6.18 -2.39 -0.01 2.09 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 2.05 6.12 -2.39 -0.01 2.04 16 36 H 0.02 0.59 8.13 -2.39 -0.02 0.57 16 37 H 0.06 2.94 5.54 -2.39 -0.01 2.93 16 38 H 0.00 0.18 8.12 -2.39 -0.02 0.16 16 39 H -0.01 -0.62 6.38 -2.39 -0.02 -0.64 16 40 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 41 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 42 H 0.38 6.96 8.56 -74.05 -0.63 6.32 16 Total: -1.00 -71.06 310.55 2.39 -68.67 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.36 Total: 12.41 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 3.38 Total: -32.78 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -1.99 Total: -80.27 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -1.38 Total: -15.97 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -71.06 2.39 -68.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872255167.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.262 kcal (2) G-P(sol) polarization free energy of solvation -71.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds