Wall clock time and date at job start Sun Mar 29 2020 23:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.50734 * 2 1 4 4 C 1.53115 * 109.50477 * 120.08416 * 2 1 3 5 5 C 1.53127 * 109.16366 * 177.59352 * 4 2 1 6 6 H 1.09000 * 109.53028 * 62.30308 * 5 4 2 7 7 O 1.42896 * 109.50119 * 182.40261 * 5 4 2 8 8 C 1.53033 * 109.27407 * 302.34065 * 5 4 2 9 9 N 1.46851 * 109.52504 * 59.18004 * 8 5 4 10 10 C 1.46898 * 111.00229 * 174.15600 * 9 8 5 11 11 C 1.52995 * 109.46864 * 72.94506 * 10 9 8 12 12 C 1.50701 * 115.54966 * 295.13353 * 11 10 9 13 13 H 1.08002 * 120.00025 * 143.53052 * 12 11 10 14 14 C 1.37874 * 120.00202 * 323.53605 * 12 11 10 15 15 N 1.31520 * 120.00164 * 353.46484 * 14 12 11 16 16 Si 1.86802 * 120.00175 * 173.45814 * 14 12 11 17 17 H 1.48500 * 109.46965 * 94.98260 * 16 14 12 18 18 H 1.48498 * 109.47264 * 214.98273 * 16 14 12 19 19 H 1.48499 * 109.46961 * 334.98215 * 16 14 12 20 20 C 1.53002 * 117.49738 * 149.46996 * 11 10 9 21 21 C 1.52996 * 117.50222 * 80.80879 * 11 10 9 22 22 C 1.46848 * 111.19773 * 298.25857 * 9 8 5 23 23 H 1.09001 * 109.46711 * 304.21994 * 1 2 3 24 24 H 1.09002 * 109.46797 * 64.21391 * 1 2 3 25 25 H 1.08998 * 109.47456 * 184.22110 * 1 2 3 26 26 H 1.08997 * 109.47274 * 180.08324 * 3 2 1 27 27 H 1.08995 * 109.47134 * 300.08266 * 3 2 1 28 28 H 1.09001 * 109.47213 * 60.08043 * 3 2 1 29 29 H 1.08997 * 109.52511 * 57.68286 * 4 2 1 30 30 H 1.08998 * 109.57480 * 297.52665 * 4 2 1 31 31 H 0.96702 * 114.00043 * 179.80315 * 7 5 4 32 32 H 1.08992 * 109.46881 * 299.16484 * 8 5 4 33 33 H 1.08999 * 109.45065 * 179.18824 * 8 5 4 34 34 H 1.09001 * 109.46916 * 192.94597 * 10 9 8 35 35 H 1.09002 * 109.46854 * 312.94452 * 10 9 8 36 36 H 0.96994 * 120.00023 * 185.00007 * 15 14 12 37 37 H 1.08999 * 117.49928 * 359.97438 * 20 11 10 38 38 H 1.09007 * 117.49838 * 145.01516 * 20 11 10 39 39 H 1.08997 * 117.49894 * 214.97873 * 21 11 10 40 40 H 1.08996 * 117.49790 * 359.97438 * 21 11 10 41 41 H 1.09002 * 109.46131 * 181.75408 * 22 9 8 42 42 H 1.08996 * 109.45821 * 301.72063 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0412 -0.7235 1.2489 5 6 3.5713 -0.7717 1.2109 6 1 3.9684 0.2432 1.2300 7 8 4.0540 -1.4944 2.3451 8 6 4.0229 -1.4732 -0.0720 9 7 3.5092 -0.7427 -1.2378 10 6 4.0371 -1.3068 -2.4871 11 6 3.3620 -2.6513 -2.7649 12 6 3.6497 -3.7419 -1.7654 13 1 2.8762 -4.4461 -1.4969 14 6 4.9004 -3.8406 -1.1937 15 7 5.8780 -3.0670 -1.6128 16 14 5.2065 -5.0728 0.1765 17 1 5.7595 -6.3253 -0.3986 18 1 6.1758 -4.5035 1.1468 19 1 3.9276 -5.3692 0.8705 20 6 3.1826 -3.0630 -4.2275 21 6 1.9708 -2.6253 -3.4011 22 6 2.0409 -0.7239 -1.2479 23 1 -0.3633 0.5780 0.8498 24 1 -0.3633 0.4471 -0.9254 25 1 -0.3634 -1.0248 0.0756 26 1 3.1309 1.4415 -0.0015 27 1 1.6767 1.9566 -0.8892 28 1 1.6791 1.9558 0.8907 29 1 1.6452 -1.7387 1.2695 30 1 1.7157 -0.1874 2.1404 31 1 5.0175 -1.5672 2.3842 32 1 3.6374 -2.4926 -0.0836 33 1 5.1120 -1.4963 -0.1089 34 1 3.8338 -0.6212 -3.3098 35 1 5.1132 -1.4530 -2.3936 36 1 6.7746 -3.1856 -1.2623 37 1 3.5453 -2.3757 -4.9919 38 1 3.2724 -4.1227 -4.4668 39 1 1.2638 -3.3971 -3.0970 40 1 1.5363 -1.6502 -3.6214 41 1 1.6905 -0.2029 -2.1389 42 1 1.6647 -1.7468 -1.2539 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879623797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:49 Heat of formation + Delta-G solvation = -38.601592 kcal Electronic energy + Delta-G solvation = -21175.366929 eV Core-core repulsion = 18348.360072 eV Total energy + Delta-G solvation = -2827.006857 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.98511 -38.51422 -37.05286 -34.97965 -34.14400 -31.08316 -28.05665 -27.95694 -27.47188 -27.15635 -23.52028 -22.93589 -22.19921 -20.86964 -19.25144 -18.25957 -17.88432 -16.79780 -16.32561 -15.96503 -15.75064 -15.42320 -15.11083 -14.69846 -14.49192 -14.11856 -13.92527 -13.44404 -13.21404 -12.99986 -12.87691 -12.78639 -12.60521 -12.47262 -12.27731 -12.19846 -12.08027 -11.76149 -11.53547 -11.39399 -11.28184 -11.04126 -10.90737 -10.64927 -10.53471 -9.87520 -8.72260 -8.02910 -6.11581 1.33476 1.39905 1.47418 2.36127 2.96183 3.20941 3.51847 3.72377 3.98212 4.03517 4.19106 4.29219 4.36382 4.53164 4.59642 4.64147 4.71291 4.75307 4.80355 4.87491 4.92800 4.94498 5.05184 5.06992 5.14310 5.16176 5.17848 5.26348 5.36415 5.40500 5.46019 5.52096 5.57370 5.60217 5.69851 5.78690 6.08668 6.36539 6.55491 6.71625 6.80031 6.88995 7.42265 8.88315 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.018339 B = 0.011672 C = 0.008510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.395035 B = 2398.363692 C = 3289.353479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.059 4.059 3 C -0.125 4.125 4 C -0.094 4.094 5 C 0.101 3.899 6 H 0.063 0.937 7 O -0.585 6.585 8 C 0.024 3.976 9 N -0.511 5.511 10 C 0.086 3.914 11 C 0.006 3.994 12 C -0.499 4.499 13 H 0.035 0.965 14 C 0.058 3.942 15 N -0.885 5.885 16 Si 0.924 3.076 17 H -0.283 1.283 18 H -0.268 1.268 19 H -0.282 1.282 20 C -0.207 4.207 21 C -0.188 4.188 22 C 0.068 3.932 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.385 0.615 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.036 0.964 35 H 0.107 0.893 36 H 0.264 0.736 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.392 7.668 3.662 10.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.059 4.059 3 C -0.182 4.182 4 C -0.132 4.132 5 C 0.042 3.958 6 H 0.080 0.920 7 O -0.391 6.391 8 C -0.104 4.104 9 N -0.234 5.234 10 C -0.042 4.042 11 C 0.004 3.996 12 C -0.537 4.537 13 H 0.053 0.947 14 C -0.144 4.144 15 N -0.523 5.523 16 Si 0.751 3.249 17 H -0.209 1.209 18 H -0.193 1.193 19 H -0.207 1.207 20 C -0.246 4.246 21 C -0.225 4.225 22 C -0.061 4.061 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.233 0.767 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.125 0.875 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.658 8.204 3.937 10.715 hybrid contribution 0.679 -2.097 0.077 2.205 sum -4.979 6.107 4.014 8.843 Atomic orbital electron populations 1.21767 0.92929 1.01607 1.02722 1.20575 0.96028 0.96206 0.93099 1.21721 1.01361 0.93673 1.01483 1.21523 0.93151 0.99987 0.98511 1.22019 0.95151 0.93981 0.84629 0.91952 1.86395 1.27665 1.78829 1.46186 1.22993 0.99650 0.98081 0.89678 1.62266 1.07229 1.51570 1.02291 1.21914 1.02947 0.89873 0.89477 1.19772 0.93406 0.95914 0.90515 1.20535 0.97007 1.12823 1.23293 0.94666 1.25222 0.95776 0.96033 0.97323 1.69790 1.00768 1.37991 1.43748 0.86087 0.78061 0.79988 0.80780 1.20896 1.19306 1.20726 1.22946 1.04713 0.99278 0.97689 1.22885 0.91717 1.00621 1.07313 1.22164 0.88795 0.98049 0.97066 0.91023 0.91596 0.93603 0.92812 0.92411 0.92077 0.93914 0.90701 0.76692 0.92310 0.92373 0.94537 0.87509 0.92534 0.90471 0.91920 0.91614 0.89491 0.91815 0.95815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.48 71.98 0.61 -2.66 16 2 C -0.06 -1.76 0.77 -52.13 -0.04 -1.80 16 3 C -0.13 -3.32 8.04 71.98 0.58 -2.74 16 4 C -0.09 -3.13 4.44 30.68 0.14 -2.99 16 5 C 0.10 3.65 3.28 30.65 0.10 3.75 16 6 H 0.06 2.12 6.59 -2.39 -0.02 2.10 16 7 O -0.58 -21.04 13.32 -148.98 -1.98 -23.03 16 8 C 0.02 1.04 3.40 86.32 0.29 1.34 16 9 N -0.51 -20.90 4.14 -896.38 -3.71 -24.61 16 10 C 0.09 3.90 5.21 86.30 0.45 4.35 16 11 C 0.01 0.26 1.16 -52.93 -0.06 0.20 16 12 C -0.50 -26.22 6.99 25.60 0.18 -26.04 16 13 H 0.04 1.95 7.82 -2.91 -0.02 1.92 16 14 C 0.06 2.96 3.07 84.65 0.26 3.22 16 15 N -0.89 -45.39 9.01 21.45 0.19 -45.20 16 16 Si 0.92 42.03 29.14 68.60 2.00 44.03 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 20 C -0.21 -9.23 9.93 30.62 0.30 -8.93 16 21 C -0.19 -7.89 7.75 30.62 0.24 -7.65 16 22 C 0.07 2.48 2.77 86.33 0.24 2.71 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.05 1.60 6.02 -2.39 -0.01 1.59 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.38 11.44 9.08 -74.06 -0.67 10.77 16 32 H 0.06 2.91 4.15 -2.39 -0.01 2.90 16 33 H 0.06 2.69 6.53 -2.39 -0.02 2.67 16 34 H 0.04 1.57 8.09 -2.39 -0.02 1.55 16 35 H 0.11 5.44 5.18 -2.39 -0.01 5.43 16 36 H 0.26 13.01 8.32 -92.71 -0.77 12.24 16 37 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.06 2.88 8.14 -2.38 -0.02 2.86 16 39 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.09 3.29 7.00 -2.39 -0.02 3.27 16 41 H 0.06 2.23 7.27 -2.39 -0.02 2.21 16 42 H 0.02 1.00 6.06 -2.39 -0.01 0.98 16 Total: -1.00 -54.67 305.74 0.10 -54.57 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 0.32 Total: 31.49 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 3.29 Total: -37.25 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -3.52 Total: -69.81 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -1.98 Total: -23.03 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.00 Total: 44.03 kcal Total: -54.67 0.10 -54.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879623797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.968 kcal (2) G-P(sol) polarization free energy of solvation -54.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds