Wall clock time and date at job start Sun Mar 29 2020 23:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99696 * 2 1 4 4 H 1.48506 * 109.47151 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47525 * 120.00095 * 3 2 1 6 6 H 1.48499 * 109.47336 * 240.00230 * 3 2 1 7 7 C 1.37875 * 120.00542 * 179.97438 * 2 1 3 8 8 C 1.51271 * 120.84558 * 5.10748 * 7 2 1 9 9 C 1.53664 * 108.30655 * 231.37776 * 8 7 2 10 10 C 1.52953 * 109.32838 * 305.14052 * 9 8 7 11 11 H 1.09008 * 109.41162 * 303.62186 * 10 9 8 12 12 N 1.46897 * 109.35997 * 183.79775 * 10 9 8 13 13 C 1.46901 * 111.00272 * 154.15875 * 12 10 9 14 14 H 1.09002 * 109.62955 * 34.94414 * 13 12 10 15 15 C 1.50288 * 109.63316 * 155.54426 * 13 12 10 16 16 C 1.54608 * 112.95491 * 211.78576 * 15 13 12 17 17 C 1.54357 * 111.45255 * 319.00253 * 16 15 13 18 18 O 1.39962 * 112.56621 * 319.31412 * 17 16 15 19 19 C 1.44226 * 112.36684 * 97.12847 * 18 17 16 20 20 C 1.45989 * 112.10225 * 277.40209 * 19 18 17 21 21 C 1.52956 * 109.81965 * 63.72393 * 10 9 8 22 22 C 1.51269 * 120.85287 * 184.82143 * 7 2 1 23 23 H 0.97008 * 119.99828 * 174.76754 * 1 2 3 24 24 H 1.08995 * 109.62822 * 351.03844 * 8 7 2 25 25 H 1.08998 * 109.62986 * 111.60993 * 8 7 2 26 26 H 1.08997 * 109.41635 * 185.24579 * 9 8 7 27 27 H 1.09008 * 109.63701 * 65.17014 * 9 8 7 28 28 H 1.00897 * 110.99865 * 278.11962 * 12 10 9 29 29 H 1.08997 * 108.78339 * 332.68457 * 15 13 12 30 30 H 1.08999 * 108.78320 * 90.89269 * 15 13 12 31 31 H 1.09004 * 109.08205 * 198.49675 * 16 15 13 32 32 H 1.08999 * 109.08198 * 79.50897 * 16 15 13 33 33 H 1.08998 * 108.86099 * 198.51278 * 17 16 15 34 34 H 1.09002 * 108.77967 * 80.05521 * 17 16 15 35 35 H 1.08996 * 108.95805 * 156.72552 * 19 18 17 36 36 H 1.08998 * 108.88826 * 38.02533 * 19 18 17 37 37 H 1.09000 * 109.02662 * 299.48812 * 20 19 18 38 38 H 1.08995 * 108.96783 * 180.60879 * 20 19 18 39 39 H 1.08995 * 109.48646 * 176.42439 * 21 10 9 40 40 H 1.09006 * 109.49115 * 56.39008 * 21 10 9 41 41 H 1.08997 * 109.62945 * 248.39266 * 22 7 2 42 42 H 1.09000 * 109.62258 * 8.77248 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1028 1.6966 1.2124 6 1 3.1027 1.6966 -1.2125 7 6 2.0046 -1.1940 0.0005 8 6 1.2723 -2.5126 -0.1145 9 6 1.7444 -3.4280 1.0258 10 6 3.2685 -3.5481 0.9805 11 1 3.5742 -3.9121 -0.0005 12 7 3.7133 -4.4941 2.0126 13 6 4.9980 -5.1059 1.6476 14 1 5.6129 -4.3780 1.1182 15 6 5.7090 -5.5661 2.8890 16 6 7.2482 -5.4849 2.7676 17 6 7.7301 -5.9503 1.3770 18 8 7.0340 -7.0734 0.9155 19 6 5.9576 -6.7230 0.0217 20 6 4.7504 -6.3308 0.7430 21 6 3.9044 -2.1807 1.2363 22 6 3.5131 -1.2186 0.1097 23 1 -0.4850 -0.8366 -0.0766 24 1 0.1988 -2.3438 -0.0296 25 1 1.4981 -2.9742 -1.0757 26 1 1.2982 -4.4152 0.9063 27 1 1.4413 -3.0057 1.9840 28 1 3.7698 -4.0451 2.9144 29 1 5.3897 -4.9460 3.7266 30 1 5.4270 -6.5991 3.0925 31 1 7.6998 -6.1178 3.5315 32 1 7.5644 -4.4541 2.9277 33 1 8.7913 -6.1924 1.4346 34 1 7.5933 -5.1345 0.6671 35 1 5.7292 -7.5806 -0.6109 36 1 6.2783 -5.8937 -0.6088 37 1 4.4175 -7.1660 1.3591 38 1 3.9700 -6.0882 0.0219 39 1 4.9890 -2.2839 1.2659 40 1 3.5504 -1.7875 2.1894 41 1 3.9428 -1.5625 -0.8311 42 1 3.8802 -0.2174 0.3354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170775808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:04 Heat of formation + Delta-G solvation = -69.961229 kcal Electronic energy + Delta-G solvation = -19911.816861 eV Core-core repulsion = 17083.450149 eV Total energy + Delta-G solvation = -2828.366713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.81353 -37.66508 -35.35344 -33.02973 -32.48069 -30.52152 -29.66339 -27.22331 -25.79942 -24.23235 -22.18802 -21.32833 -20.90815 -20.05331 -19.25072 -16.77898 -16.48140 -16.26491 -15.34361 -15.05423 -14.82664 -14.06003 -13.74005 -13.42418 -13.24191 -13.04968 -12.74648 -12.52154 -12.33631 -11.90802 -11.65594 -11.30119 -11.19479 -11.00412 -10.72217 -10.61820 -10.57456 -10.39422 -10.29076 -10.10861 -9.97276 -9.68102 -9.64232 -9.10873 -8.53693 -8.33548 -7.83287 -6.42125 -4.00379 3.38703 3.40080 3.60242 3.78829 4.35400 4.47112 4.70329 4.87854 4.92027 5.03693 5.12081 5.24270 5.32826 5.44486 5.49041 5.59095 5.66802 5.72364 5.79843 5.87099 5.94620 6.08545 6.11276 6.14004 6.22145 6.35068 6.45144 6.65859 6.76736 6.79659 6.84775 6.97516 7.07753 7.15955 7.29036 7.35159 7.58187 7.62911 7.84700 8.09505 8.33042 8.89338 9.62069 10.95703 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.034284 B = 0.005232 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.510915 B = 5350.034018 C = 5651.550478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.034 3.966 3 Si 1.062 2.938 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.566 4.566 8 C 0.000 4.000 9 C -0.091 4.091 10 C 0.102 3.898 11 H 0.062 0.938 12 N -0.686 5.686 13 C 0.090 3.910 14 H 0.042 0.958 15 C -0.116 4.116 16 C -0.145 4.145 17 C 0.059 3.941 18 O -0.373 6.373 19 C 0.061 3.939 20 C -0.142 4.142 21 C -0.132 4.132 22 C -0.002 4.002 23 H 0.272 0.728 24 H 0.036 0.964 25 H 0.004 0.996 26 H 0.035 0.965 27 H 0.047 0.953 28 H 0.336 0.664 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.025 0.975 40 H 0.052 0.948 41 H 0.009 0.991 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.907 -10.384 3.177 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.171 4.171 3 Si 0.891 3.109 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.586 4.586 8 C -0.038 4.038 9 C -0.129 4.129 10 C -0.007 4.007 11 H 0.081 0.919 12 N -0.316 5.316 13 C -0.021 4.021 14 H 0.060 0.940 15 C -0.154 4.154 16 C -0.183 4.183 17 C -0.019 4.019 18 O -0.291 6.291 19 C -0.016 4.016 20 C -0.180 4.180 21 C -0.172 4.172 22 C -0.041 4.041 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.022 0.978 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.155 0.845 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.027 0.973 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 12.345 -9.470 3.057 15.856 hybrid contribution 0.752 -0.582 0.125 0.959 sum 13.097 -10.052 3.182 16.813 Atomic orbital electron populations 1.70820 1.06830 1.31097 1.45735 1.25733 0.96272 1.01790 0.93338 0.83615 0.74804 0.75715 0.76752 1.21285 1.21391 1.21273 1.21021 0.90890 0.92640 1.54008 1.19528 0.97257 0.94248 0.92740 1.21587 0.93006 0.97752 1.00559 1.21452 0.96528 0.89352 0.93323 0.91948 1.60785 1.28001 1.37013 1.05850 1.21118 0.90250 0.95184 0.95500 0.93971 1.21517 0.93960 1.02423 0.97535 1.22593 0.96235 1.01262 0.98234 1.22305 0.95747 0.88978 0.94891 1.87746 1.46071 1.30618 1.64673 1.21605 0.87698 1.00736 0.91530 1.21161 0.98163 0.98451 1.00252 1.22210 0.96254 0.97498 1.01222 1.19489 0.97267 0.94126 0.93178 0.91542 0.94534 0.97769 0.94669 0.93466 0.84520 0.92076 0.91320 0.91556 0.91518 0.90630 0.93220 0.89454 0.93120 0.90955 0.90352 0.95610 0.92969 0.97282 0.95847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.98 13.66 55.43 0.76 -26.22 16 2 C 0.03 0.94 5.46 -17.82 -0.10 0.84 16 3 Si 1.06 25.07 27.19 -169.99 -4.62 20.45 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.57 -14.99 5.50 -98.92 -0.54 -15.54 16 8 C 0.00 0.01 5.99 -27.26 -0.16 -0.15 16 9 C -0.09 -1.95 5.55 -26.41 -0.15 -2.10 16 10 C 0.10 1.95 2.10 -67.76 -0.14 1.81 16 11 H 0.06 1.24 7.22 -51.92 -0.37 0.86 16 12 N -0.69 -11.02 6.05 -100.51 -0.61 -11.63 16 13 C 0.09 1.24 1.95 -68.40 -0.13 1.11 16 14 H 0.04 0.63 6.10 -51.93 -0.32 0.31 16 15 C -0.12 -1.40 5.17 -27.24 -0.14 -1.54 16 16 C -0.14 -1.51 6.27 -25.18 -0.16 -1.67 16 17 C 0.06 0.62 6.09 37.87 0.23 0.86 16 18 O -0.37 -4.61 10.35 -32.83 -0.34 -4.95 16 19 C 0.06 0.70 6.12 33.84 0.21 0.91 16 20 C -0.14 -1.85 5.07 -29.39 -0.15 -2.00 16 21 C -0.13 -2.68 5.17 -26.64 -0.14 -2.82 16 22 C 0.00 -0.05 5.56 -27.49 -0.15 -0.21 16 23 H 0.27 8.01 6.36 -40.82 -0.26 7.75 16 24 H 0.04 0.96 5.80 -51.93 -0.30 0.66 16 25 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 28 H 0.34 5.23 7.62 -39.29 -0.30 4.93 16 29 H 0.06 0.72 7.32 -51.93 -0.38 0.34 16 30 H 0.07 0.86 7.34 -51.93 -0.38 0.48 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.53 6.53 -51.93 -0.34 0.19 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.57 7.34 -51.93 -0.38 0.19 16 37 H 0.07 0.95 7.53 -51.93 -0.39 0.56 16 38 H 0.08 1.11 7.42 -51.93 -0.39 0.72 16 39 H 0.03 0.47 7.43 -51.93 -0.39 0.08 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 42 H 0.02 0.53 5.24 -51.93 -0.27 0.26 16 LS Contribution 307.08 15.07 4.63 4.63 Total: -1.00 -28.44 307.08 -8.78 -37.22 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.07 Total: 1.01 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -1.53 Total: -20.51 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.15 Total: -37.86 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.34 Total: -4.95 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -4.62 Total: 20.45 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.44 -8.78 -37.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170775808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.741 kcal (2) G-P(sol) polarization free energy of solvation -28.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds