Wall clock time and date at job start Sun Mar 29 2020 23:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99696 * 2 1 4 4 H 1.48506 * 109.47151 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47525 * 120.00095 * 3 2 1 6 6 H 1.48499 * 109.47336 * 240.00230 * 3 2 1 7 7 C 1.37875 * 120.00542 * 179.97438 * 2 1 3 8 8 C 1.51271 * 120.84558 * 5.10748 * 7 2 1 9 9 C 1.53664 * 108.30655 * 231.37776 * 8 7 2 10 10 C 1.52953 * 109.32838 * 305.14052 * 9 8 7 11 11 H 1.09008 * 109.41162 * 303.62186 * 10 9 8 12 12 N 1.46897 * 109.35997 * 183.79775 * 10 9 8 13 13 C 1.46901 * 111.00272 * 154.15875 * 12 10 9 14 14 H 1.09002 * 109.62955 * 34.94414 * 13 12 10 15 15 C 1.50288 * 109.63316 * 155.54426 * 13 12 10 16 16 C 1.54608 * 112.95491 * 211.78576 * 15 13 12 17 17 C 1.54357 * 111.45255 * 319.00253 * 16 15 13 18 18 O 1.39962 * 112.56621 * 319.31412 * 17 16 15 19 19 C 1.44226 * 112.36684 * 97.12847 * 18 17 16 20 20 C 1.45989 * 112.10225 * 277.40209 * 19 18 17 21 21 C 1.52956 * 109.81965 * 63.72393 * 10 9 8 22 22 C 1.51269 * 120.85287 * 184.82143 * 7 2 1 23 23 H 0.97008 * 119.99828 * 174.76754 * 1 2 3 24 24 H 1.08995 * 109.62822 * 351.03844 * 8 7 2 25 25 H 1.08998 * 109.62986 * 111.60993 * 8 7 2 26 26 H 1.08997 * 109.41635 * 185.24579 * 9 8 7 27 27 H 1.09008 * 109.63701 * 65.17014 * 9 8 7 28 28 H 1.00897 * 110.99865 * 278.11962 * 12 10 9 29 29 H 1.08997 * 108.78339 * 332.68457 * 15 13 12 30 30 H 1.08999 * 108.78320 * 90.89269 * 15 13 12 31 31 H 1.09004 * 109.08205 * 198.49675 * 16 15 13 32 32 H 1.08999 * 109.08198 * 79.50897 * 16 15 13 33 33 H 1.08998 * 108.86099 * 198.51278 * 17 16 15 34 34 H 1.09002 * 108.77967 * 80.05521 * 17 16 15 35 35 H 1.08996 * 108.95805 * 156.72552 * 19 18 17 36 36 H 1.08998 * 108.88826 * 38.02533 * 19 18 17 37 37 H 1.09000 * 109.02662 * 299.48812 * 20 19 18 38 38 H 1.08995 * 108.96783 * 180.60879 * 20 19 18 39 39 H 1.08995 * 109.48646 * 176.42439 * 21 10 9 40 40 H 1.09006 * 109.49115 * 56.39008 * 21 10 9 41 41 H 1.08997 * 109.62945 * 248.39266 * 22 7 2 42 42 H 1.09000 * 109.62258 * 8.77248 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1028 1.6966 1.2124 6 1 3.1027 1.6966 -1.2125 7 6 2.0046 -1.1940 0.0005 8 6 1.2723 -2.5126 -0.1145 9 6 1.7444 -3.4280 1.0258 10 6 3.2685 -3.5481 0.9805 11 1 3.5742 -3.9121 -0.0005 12 7 3.7133 -4.4941 2.0126 13 6 4.9980 -5.1059 1.6476 14 1 5.6129 -4.3780 1.1182 15 6 5.7090 -5.5661 2.8890 16 6 7.2482 -5.4849 2.7676 17 6 7.7301 -5.9503 1.3770 18 8 7.0340 -7.0734 0.9155 19 6 5.9576 -6.7230 0.0217 20 6 4.7504 -6.3308 0.7430 21 6 3.9044 -2.1807 1.2363 22 6 3.5131 -1.2186 0.1097 23 1 -0.4850 -0.8366 -0.0766 24 1 0.1988 -2.3438 -0.0296 25 1 1.4981 -2.9742 -1.0757 26 1 1.2982 -4.4152 0.9063 27 1 1.4413 -3.0057 1.9840 28 1 3.7698 -4.0451 2.9144 29 1 5.3897 -4.9460 3.7266 30 1 5.4270 -6.5991 3.0925 31 1 7.6998 -6.1178 3.5315 32 1 7.5644 -4.4541 2.9277 33 1 8.7913 -6.1924 1.4346 34 1 7.5933 -5.1345 0.6671 35 1 5.7292 -7.5806 -0.6109 36 1 6.2783 -5.8937 -0.6088 37 1 4.4175 -7.1660 1.3591 38 1 3.9700 -6.0882 0.0219 39 1 4.9890 -2.2839 1.2659 40 1 3.5504 -1.7875 2.1894 41 1 3.9428 -1.5625 -0.8311 42 1 3.8802 -0.2174 0.3354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170775808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:03 Heat of formation + Delta-G solvation = -87.702169 kcal Electronic energy + Delta-G solvation = -19912.586166 eV Core-core repulsion = 17083.450149 eV Total energy + Delta-G solvation = -2829.136018 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.82726 -39.16032 -36.76523 -34.53235 -33.57175 -32.06254 -31.48147 -28.59850 -27.04840 -25.37136 -23.91968 -22.82590 -22.29093 -21.28125 -20.74450 -18.54261 -17.48518 -17.37671 -16.72321 -16.14853 -15.99864 -15.67641 -15.22541 -14.84744 -14.74409 -14.23803 -14.18342 -13.83152 -13.73405 -13.42557 -13.11741 -12.83575 -12.58220 -12.37209 -12.22437 -12.06233 -11.92124 -11.81658 -11.67618 -11.50958 -11.43430 -11.31218 -10.94378 -10.57861 -10.52947 -10.31221 -9.23046 -8.58501 -6.15769 1.48795 1.55019 1.74671 2.54168 2.93977 3.07063 3.22844 3.72301 3.89421 4.02648 4.07171 4.14685 4.20895 4.24054 4.36816 4.49218 4.53090 4.63276 4.64714 4.68619 4.73808 4.89329 4.91415 4.96473 5.00814 5.03845 5.15085 5.16803 5.17108 5.21487 5.23837 5.28379 5.31770 5.39065 5.50442 5.70285 6.05776 6.21468 6.24304 6.30641 6.54558 6.76106 7.54331 8.78966 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.034284 B = 0.005232 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.510915 B = 5350.034018 C = 5651.550478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.021 4.021 3 Si 1.097 2.903 4 H -0.295 1.295 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.573 4.573 8 C -0.006 4.006 9 C -0.081 4.081 10 C 0.116 3.884 11 H 0.059 0.941 12 N -0.685 5.685 13 C 0.090 3.910 14 H 0.039 0.961 15 C -0.114 4.114 16 C -0.141 4.141 17 C 0.052 3.948 18 O -0.384 6.384 19 C 0.061 3.939 20 C -0.137 4.137 21 C -0.125 4.125 22 C -0.008 4.008 23 H 0.258 0.742 24 H 0.011 0.989 25 H 0.000 1.000 26 H 0.044 0.956 27 H 0.033 0.967 28 H 0.341 0.659 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.013 0.987 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.620 -10.921 3.769 19.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.219 4.219 3 Si 0.921 3.079 4 H -0.221 1.221 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.592 4.592 8 C -0.044 4.044 9 C -0.119 4.119 10 C 0.006 3.994 11 H 0.077 0.923 12 N -0.315 5.315 13 C -0.019 4.019 14 H 0.057 0.943 15 C -0.151 4.151 16 C -0.180 4.180 17 C -0.026 4.026 18 O -0.303 6.303 19 C -0.015 4.015 20 C -0.175 4.175 21 C -0.164 4.164 22 C -0.047 4.047 23 H 0.070 0.930 24 H 0.029 0.971 25 H 0.019 0.981 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.160 0.840 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.031 0.969 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 15.086 -10.034 3.657 18.484 hybrid contribution -0.098 -0.508 -0.080 0.524 sum 14.988 -10.543 3.576 18.671 Atomic orbital electron populations 1.70928 1.08082 1.30355 1.49144 1.27006 0.96299 1.05336 0.93239 0.83163 0.74221 0.72217 0.78283 1.22147 1.19237 1.19308 1.21603 0.93009 0.92813 1.51783 1.19554 0.95895 0.94979 0.93945 1.21414 0.95263 0.97107 0.98139 1.21152 0.94419 0.89664 0.94150 0.92298 1.60688 1.29748 1.35878 1.05210 1.21191 0.89051 0.95143 0.96540 0.94286 1.21468 0.95122 1.01988 0.96571 1.22584 0.94779 1.02110 0.98502 1.22469 0.96595 0.88626 0.94869 1.87738 1.46179 1.31518 1.64877 1.21610 0.86965 1.01538 0.91388 1.21125 0.98618 0.97954 0.99835 1.22099 0.98010 0.96950 0.99372 1.19549 0.94965 0.95520 0.94641 0.92991 0.97054 0.98122 0.93740 0.94847 0.83954 0.91740 0.91871 0.90537 0.90615 0.88904 0.93217 0.88084 0.92707 0.91289 0.91628 0.92838 0.93700 0.96876 0.95267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.87 13.66 21.45 0.29 -57.58 16 2 C -0.02 -1.18 5.46 84.65 0.46 -0.72 16 3 Si 1.10 49.89 27.19 68.60 1.87 51.76 16 4 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.57 -30.31 5.50 -16.17 -0.09 -30.40 16 8 C -0.01 -0.28 5.99 30.25 0.18 -0.10 16 9 C -0.08 -3.46 5.55 30.80 0.17 -3.29 16 10 C 0.12 4.23 2.10 44.89 0.09 4.32 16 11 H 0.06 2.22 7.22 -2.38 -0.02 2.21 16 12 N -0.68 -20.58 6.05 -471.91 -2.86 -23.43 16 13 C 0.09 2.28 1.95 44.47 0.09 2.36 16 14 H 0.04 1.04 6.10 -2.39 -0.01 1.02 16 15 C -0.11 -2.43 5.17 30.27 0.16 -2.28 16 16 C -0.14 -2.50 6.27 31.60 0.20 -2.31 16 17 C 0.05 0.95 6.09 72.44 0.44 1.39 16 18 O -0.38 -8.51 10.35 -140.37 -1.45 -9.96 16 19 C 0.06 1.27 6.12 69.83 0.43 1.70 16 20 C -0.14 -3.31 5.07 28.87 0.15 -3.16 16 21 C -0.12 -4.75 5.17 30.66 0.16 -4.59 16 22 C -0.01 -0.38 5.56 30.11 0.17 -0.21 16 23 H 0.26 15.96 6.36 -92.70 -0.59 15.37 16 24 H 0.01 0.61 5.80 -2.39 -0.01 0.59 16 25 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.34 9.82 7.62 -89.70 -0.68 9.14 16 29 H 0.06 1.34 7.32 -2.39 -0.02 1.32 16 30 H 0.06 1.43 7.34 -2.39 -0.02 1.41 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.05 0.91 6.53 -2.39 -0.02 0.89 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.05 1.10 7.34 -2.39 -0.02 1.08 16 37 H 0.07 1.70 7.53 -2.39 -0.02 1.69 16 38 H 0.07 1.75 7.42 -2.39 -0.02 1.74 16 39 H 0.05 1.75 7.43 -2.39 -0.02 1.74 16 40 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.03 1.26 5.24 -2.39 -0.01 1.25 16 Total: -1.00 -60.91 307.08 0.94 -59.97 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.49 Total: 16.52 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 2.60 Total: -37.27 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -2.56 Total: -81.01 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -1.45 Total: -9.96 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 1.87 Total: 51.76 kcal Total: -60.91 0.94 -59.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170775808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.734 kcal (2) G-P(sol) polarization free energy of solvation -60.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds