Wall clock time and date at job start Sun Mar 29 2020 23:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 120.00217 * 2 1 4 4 H 1.48502 * 109.47196 * 240.00497 * 3 2 1 5 5 H 1.48503 * 109.46753 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46978 * 120.00097 * 3 2 1 7 7 C 1.37879 * 120.00219 * 180.02562 * 2 1 3 8 8 C 1.51276 * 120.84586 * 359.97438 * 7 2 1 9 9 C 1.53229 * 108.53474 * 128.63260 * 8 7 2 10 10 C 1.52961 * 109.40535 * 54.62657 * 9 8 7 11 11 H 1.09007 * 109.41084 * 56.43703 * 10 9 8 12 12 N 1.46897 * 109.41324 * 176.29464 * 10 9 8 13 13 C 1.46899 * 110.99947 * 273.39715 * 12 10 9 14 14 H 1.09009 * 108.94443 * 34.51727 * 13 12 10 15 15 C 1.46292 * 108.96044 * 153.27461 * 13 12 10 16 16 C 1.54198 * 112.07316 * 181.56210 * 15 13 12 17 17 C 1.50402 * 108.77427 * 282.18893 * 16 15 13 18 18 O 1.44190 * 112.77384 * 92.57726 * 17 16 15 19 19 C 1.44182 * 116.92619 * 318.47923 * 18 17 16 20 20 C 1.50409 * 112.78275 * 318.47569 * 19 18 17 21 21 C 1.52958 * 109.76006 * 296.36569 * 10 9 8 22 22 C 1.51268 * 120.85345 * 179.97438 * 7 2 1 23 23 H 0.96997 * 119.99675 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.62667 * 8.91644 * 8 7 2 25 25 H 1.08999 * 109.78087 * 248.44201 * 8 7 2 26 26 H 1.08998 * 109.48383 * 294.64452 * 9 8 7 27 27 H 1.08997 * 109.48087 * 174.60330 * 9 8 7 28 28 H 1.00903 * 111.00079 * 149.44684 * 12 10 9 29 29 H 1.09001 * 108.96020 * 302.22796 * 15 13 12 30 30 H 1.08996 * 108.96002 * 60.98164 * 15 13 12 31 31 H 1.09003 * 109.58556 * 41.97890 * 16 15 13 32 32 H 1.09000 * 109.58437 * 162.39796 * 16 15 13 33 33 H 1.09001 * 108.82582 * 213.43060 * 17 16 15 34 34 H 1.09004 * 108.82119 * 331.84085 * 17 16 15 35 35 H 1.08997 * 108.82141 * 79.33076 * 19 18 17 36 36 H 1.09001 * 108.82090 * 197.72944 * 19 18 17 37 37 H 1.09003 * 109.58901 * 332.78492 * 20 19 18 38 38 H 1.09008 * 109.58838 * 212.35953 * 20 19 18 39 39 H 1.08996 * 109.48440 * 183.60893 * 21 10 9 40 40 H 1.08999 * 109.48735 * 303.65495 * 21 10 9 41 41 H 1.08997 * 109.62652 * 351.08322 * 22 7 2 42 42 H 1.09003 * 109.62635 * 111.45991 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 6 1.2677 -2.5152 -0.0005 9 6 1.8221 -3.3822 -1.1358 10 6 3.3393 -3.5066 -0.9858 11 1 3.5739 -3.9112 -0.0012 12 7 3.8599 -4.4092 -2.0213 13 6 3.8004 -5.8086 -1.5782 14 1 2.9142 -5.9462 -0.9586 15 6 3.6984 -6.6750 -2.7525 16 6 3.5922 -8.1641 -2.3665 17 6 4.9601 -8.6664 -1.9941 18 8 5.2268 -8.5636 -0.5809 19 6 4.7918 -7.3582 0.0797 20 6 5.0529 -6.1210 -0.7348 21 6 3.9886 -2.1301 -1.1379 22 6 3.5171 -1.2165 -0.0011 23 1 -0.4849 0.8400 0.0004 24 1 0.2035 -2.3408 -0.1592 25 1 1.4175 -3.0211 0.9532 26 1 1.5884 -2.9189 -2.0944 27 1 1.3699 -4.3729 -1.0907 28 1 4.7995 -4.1532 -2.2851 29 1 2.8144 -6.3936 -3.3247 30 1 4.5823 -6.5339 -3.3746 31 1 2.9186 -8.2741 -1.5166 32 1 3.2113 -8.7348 -3.2134 33 1 5.0445 -9.7112 -2.2929 34 1 5.7073 -8.0852 -2.5346 35 1 3.7221 -7.4310 0.2756 36 1 5.3175 -7.2688 1.0304 37 1 5.9044 -6.2903 -1.3939 38 1 5.2638 -5.2834 -0.0698 39 1 5.0729 -2.2328 -1.0943 40 1 3.7026 -1.6971 -2.0964 41 1 3.8982 -0.2078 -0.1602 42 1 3.8780 -1.5977 0.9542 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170775813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:12 Heat of formation + Delta-G solvation = -68.937466 kcal Electronic energy + Delta-G solvation = -19800.812243 eV Core-core repulsion = 16972.489924 eV Total energy + Delta-G solvation = -2828.322319 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.76338 -37.47879 -35.32787 -33.13712 -32.11375 -30.46965 -29.58265 -27.48158 -26.13371 -24.35397 -21.87464 -21.33228 -20.60945 -20.26364 -19.10854 -16.73676 -16.57182 -16.02203 -15.47125 -14.57445 -14.46873 -14.28800 -13.87389 -13.36929 -13.28273 -12.91844 -12.70313 -12.47103 -12.28016 -11.96730 -11.65157 -11.48540 -11.24906 -11.01866 -10.85666 -10.71112 -10.56453 -10.43694 -10.39301 -10.16892 -9.86642 -9.58631 -9.57291 -8.87643 -8.64353 -8.45264 -7.92864 -6.07885 -3.98457 3.29247 3.35988 3.37020 3.69199 4.35536 4.39751 4.62543 4.79180 4.84601 5.02659 5.11711 5.19213 5.33955 5.48861 5.56719 5.59545 5.64885 5.75654 5.77205 5.88119 5.92798 6.05741 6.07065 6.19676 6.27905 6.36461 6.55744 6.67688 6.81124 6.88253 6.95894 7.01599 7.14543 7.15755 7.41486 7.61968 7.67597 7.76408 7.86083 7.92250 8.42174 8.99451 9.56633 11.01988 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.043825 B = 0.004777 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.755039 B = 5860.272254 C = 6017.297587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.487 4.487 8 C 0.009 3.991 9 C -0.091 4.091 10 C 0.101 3.899 11 H 0.033 0.967 12 N -0.686 5.686 13 C 0.087 3.913 14 H 0.076 0.924 15 C -0.109 4.109 16 C -0.155 4.155 17 C 0.064 3.936 18 O -0.399 6.399 19 C 0.068 3.932 20 C -0.184 4.184 21 C -0.108 4.108 22 C -0.009 4.009 23 H 0.264 0.736 24 H 0.056 0.944 25 H -0.001 1.001 26 H 0.053 0.947 27 H 0.025 0.975 28 H 0.332 0.668 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.028 0.972 40 H 0.059 0.941 41 H 0.024 0.976 42 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.858 -13.233 -3.862 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.506 4.506 8 C -0.029 4.029 9 C -0.130 4.130 10 C -0.008 4.008 11 H 0.051 0.949 12 N -0.315 5.315 13 C -0.023 4.023 14 H 0.094 0.906 15 C -0.147 4.147 16 C -0.193 4.193 17 C -0.012 4.012 18 O -0.319 6.319 19 C -0.009 4.009 20 C -0.224 4.224 21 C -0.146 4.146 22 C -0.047 4.047 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.018 0.982 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.149 0.851 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.042 0.958 42 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 8.165 -13.258 -4.121 16.107 hybrid contribution 1.060 1.202 0.457 1.667 sum 9.225 -12.056 -3.664 15.617 Atomic orbital electron populations 1.69825 1.06138 1.26967 1.49891 1.24840 0.94723 0.98484 0.94634 0.86671 0.79410 0.83159 0.78890 1.20011 1.21852 1.20136 1.20014 0.89177 0.91590 1.49797 1.19394 0.98655 0.92943 0.91931 1.21601 0.92546 0.97482 1.01335 1.21462 0.96864 0.91404 0.91051 0.94898 1.60855 1.27444 1.01054 1.42190 1.20685 0.96639 0.89676 0.95272 0.90607 1.20616 1.03088 0.92795 0.98188 1.21927 0.97928 0.96927 1.02502 1.22305 0.95895 1.01084 0.81933 1.88222 1.82117 1.39420 1.22093 1.22213 0.99639 0.83852 0.95194 1.22715 1.00244 0.98872 1.00531 1.21764 0.95813 0.95649 1.01417 1.19604 0.96939 0.94544 0.93578 0.92572 0.92507 0.98238 0.92778 0.95648 0.85064 0.90741 0.92169 0.90759 0.90465 0.89951 0.93294 0.92982 0.89791 0.90886 0.90384 0.95375 0.92211 0.95761 0.96617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 12.73 55.43 0.71 -25.15 16 2 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 3 Si 0.89 21.39 26.80 -169.99 -4.56 16.84 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.49 -12.88 5.51 -98.92 -0.55 -13.43 16 8 C 0.01 0.22 5.97 -27.48 -0.16 0.05 16 9 C -0.09 -1.97 5.45 -26.63 -0.15 -2.12 16 10 C 0.10 1.89 2.07 -67.76 -0.14 1.75 16 11 H 0.03 0.64 7.11 -51.93 -0.37 0.27 16 12 N -0.69 -10.69 5.98 -102.49 -0.61 -11.30 16 13 C 0.09 1.17 1.83 -70.28 -0.13 1.04 16 14 H 0.08 1.14 6.58 -51.92 -0.34 0.80 16 15 C -0.11 -1.26 4.85 -29.29 -0.14 -1.40 16 16 C -0.15 -1.54 5.61 -27.40 -0.15 -1.70 16 17 C 0.06 0.65 6.27 35.86 0.22 0.88 16 18 O -0.40 -4.99 10.88 -35.23 -0.38 -5.38 16 19 C 0.07 0.80 6.26 35.86 0.22 1.02 16 20 C -0.18 -2.22 4.84 -27.40 -0.13 -2.36 16 21 C -0.11 -2.16 5.22 -26.61 -0.14 -2.30 16 22 C -0.01 -0.20 5.60 -27.46 -0.15 -0.35 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.06 1.57 7.07 -51.93 -0.37 1.21 16 25 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 26 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.02 0.51 7.49 -51.93 -0.39 0.12 16 28 H 0.33 4.77 8.02 -39.29 -0.31 4.46 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.67 7.55 -51.93 -0.39 0.27 16 31 H 0.07 0.80 7.15 -51.93 -0.37 0.43 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.48 6.67 -51.93 -0.35 0.14 16 35 H 0.05 0.62 6.67 -51.93 -0.35 0.28 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.85 7.15 -51.93 -0.37 0.48 16 38 H 0.08 1.00 7.32 -51.92 -0.38 0.62 16 39 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.02 0.55 5.17 -51.93 -0.27 0.29 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 308.09 15.07 4.64 4.64 Total: -1.00 -28.11 308.09 -8.89 -37.00 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.19 Total: 0.27 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -1.49 Total: -16.92 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.09 Total: -36.45 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.38 Total: -5.38 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.56 Total: 16.84 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.11 -8.89 -37.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170775813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.939 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds