Wall clock time and date at job start Sun Mar 29 2020 23:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 110.45418 * 2 1 4 4 C 1.46903 * 110.99499 * 297.13201 * 3 2 1 5 5 C 1.53000 * 109.46930 * 237.57093 * 4 3 2 6 6 C 1.52997 * 109.46886 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47197 * 60.00302 * 6 5 4 8 8 C 1.50703 * 109.46855 * 180.02562 * 7 6 5 9 9 H 1.07993 * 120.00298 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99727 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99713 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00129 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47197 * 89.99701 * 12 10 8 14 14 H 1.48494 * 109.47029 * 210.00120 * 12 10 8 15 15 H 1.48500 * 109.46832 * 329.99629 * 12 10 8 16 16 C 1.53000 * 109.46956 * 299.99655 * 7 6 5 17 17 C 1.52997 * 109.46886 * 60.00155 * 16 7 6 18 18 C 1.54511 * 110.51234 * 122.59849 * 2 1 3 19 19 C 1.54472 * 104.06302 * 118.78586 * 18 2 1 20 20 O 1.44429 * 104.80544 * 336.02324 * 19 18 2 21 21 C 1.44421 * 105.27238 * 40.51050 * 20 19 18 22 22 H 1.08998 * 109.46910 * 65.06973 * 1 2 3 23 23 H 1.09005 * 109.47215 * 185.06265 * 1 2 3 24 24 H 1.08994 * 109.47735 * 305.06216 * 1 2 3 25 25 H 1.00900 * 110.99795 * 173.18502 * 3 2 1 26 26 H 1.08998 * 109.47360 * 357.57339 * 4 3 2 27 27 H 1.09001 * 109.46772 * 60.00626 * 5 4 3 28 28 H 1.08998 * 109.47300 * 300.00283 * 5 4 3 29 29 H 1.08998 * 109.47104 * 300.00062 * 6 5 4 30 30 H 1.08999 * 109.47455 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47290 * 59.99874 * 7 6 5 32 32 H 0.97008 * 119.99748 * 180.02562 * 11 10 8 33 33 H 1.09001 * 109.46772 * 179.97438 * 16 7 6 34 34 H 1.08998 * 109.47300 * 300.00212 * 16 7 6 35 35 H 1.08998 * 109.47104 * 59.99937 * 17 16 7 36 36 H 1.08997 * 109.47064 * 179.97438 * 17 16 7 37 37 H 1.08997 * 110.51495 * 237.43536 * 18 2 1 38 38 H 1.09001 * 110.51020 * 0.02562 * 18 2 1 39 39 H 1.08994 * 110.37437 * 94.85277 * 19 18 2 40 40 H 1.09003 * 110.37306 * 217.08163 * 19 18 2 41 41 H 1.09002 * 110.37271 * 200.66255 * 21 20 19 42 42 H 1.08998 * 110.37384 * 78.32345 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0433 1.3764 0.0000 4 6 1.6412 2.0882 -1.2206 5 6 2.8877 2.5891 -1.9529 6 6 2.4689 3.3309 -3.2238 7 6 1.5835 4.5216 -2.8509 8 6 1.1705 5.2519 -4.1029 9 1 1.5056 4.9015 -5.0679 10 6 0.3647 6.3674 -4.0162 11 7 -0.0438 6.7938 -2.8410 12 14 -0.1479 7.2722 -5.5680 13 1 -1.4194 6.6993 -6.0779 14 1 -0.3419 8.7119 -5.2602 15 1 0.9103 7.1248 -6.5993 16 6 0.3370 4.0207 -2.1186 17 6 0.7558 3.2789 -0.8477 18 6 2.0714 -0.7796 1.2192 19 6 2.8787 -1.9392 0.5948 20 8 2.3120 -2.1166 -0.7217 21 6 2.0743 -0.7808 -1.2167 22 1 -0.3633 0.4332 -0.9319 23 1 -0.3634 -1.0237 0.0907 24 1 -0.3634 0.5903 0.8411 25 1 3.0460 1.3883 0.1118 26 1 1.0859 1.4112 -1.8697 27 1 3.5187 1.7407 -2.2182 28 1 3.4430 3.2660 -1.3038 29 1 1.9134 2.6542 -3.8731 30 1 3.3569 3.6874 -3.7458 31 1 2.1390 5.1983 -2.2017 32 1 -0.6110 7.5784 -2.7801 33 1 -0.2936 4.8691 -1.8526 34 1 -0.2186 3.3441 -2.7679 35 1 1.3113 3.9556 -0.1985 36 1 -0.1322 2.9225 -0.3258 37 1 2.7199 -0.1438 1.8219 38 1 1.2490 -1.1655 1.8217 39 1 3.9326 -1.6713 0.5212 40 1 2.7590 -2.8467 1.1867 41 1 1.3350 -0.7988 -2.0175 42 1 3.0049 -0.3352 -1.5681 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:50 Heat of formation + Delta-G solvation = -67.413844 kcal Electronic energy + Delta-G solvation = -19877.021779 eV Core-core repulsion = 17048.765529 eV Total energy + Delta-G solvation = -2828.256250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.14105 -37.82257 -35.10344 -32.71681 -30.92048 -29.77804 -29.58462 -27.75302 -26.22868 -24.27774 -22.78494 -21.59179 -20.58765 -19.52329 -18.70941 -16.47195 -16.30289 -16.26537 -15.34603 -14.94231 -14.46627 -14.28834 -13.66038 -13.42696 -13.01244 -12.78664 -12.49183 -12.42341 -12.09366 -12.02615 -11.59969 -11.44771 -11.35952 -11.07953 -10.97435 -10.86852 -10.61503 -10.38662 -10.25838 -10.15047 -9.92643 -9.78817 -9.31967 -8.90655 -8.66564 -8.26485 -8.09751 -5.94296 -4.00513 3.32057 3.38978 3.41986 3.79019 4.36606 4.46472 4.48886 4.68308 4.84809 5.05384 5.06597 5.33577 5.38284 5.50204 5.53031 5.55942 5.65911 5.69464 5.78757 5.82958 5.87174 6.01716 6.15613 6.25443 6.36639 6.42162 6.44712 6.62180 6.69290 6.74698 6.76888 6.93986 7.16875 7.27586 7.40335 7.54786 7.62827 7.79879 8.06536 8.21806 8.51449 9.03695 9.63950 11.11076 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.045882 B = 0.004669 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.119610 B = 5995.910565 C = 6164.307887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.086 3.914 3 N -0.672 5.672 4 C 0.089 3.911 5 C -0.131 4.131 6 C -0.105 4.105 7 C 0.049 3.951 8 C -0.514 4.514 9 H 0.052 0.948 10 C 0.061 3.939 11 N -0.889 5.889 12 Si 0.888 3.112 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.275 1.275 16 C -0.110 4.110 17 C -0.098 4.098 18 C -0.147 4.147 19 C 0.042 3.958 20 O -0.376 6.376 21 C 0.017 3.983 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.337 0.663 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.025 0.975 32 H 0.259 0.741 33 H 0.092 0.908 34 H 0.029 0.971 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.927 -13.942 7.539 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.006 4.006 3 N -0.303 5.303 4 C -0.020 4.020 5 C -0.169 4.169 6 C -0.143 4.143 7 C 0.031 3.969 8 C -0.552 4.552 9 H 0.071 0.929 10 C -0.140 4.140 11 N -0.529 5.529 12 Si 0.716 3.284 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.200 1.200 16 C -0.149 4.149 17 C -0.136 4.136 18 C -0.185 4.185 19 C -0.035 4.035 20 O -0.294 6.294 21 C -0.061 4.061 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.155 0.845 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.255 -13.756 7.894 16.191 hybrid contribution 0.361 0.349 -1.416 1.502 sum 3.615 -13.407 6.478 15.322 Atomic orbital electron populations 1.21823 0.92586 1.01433 1.03096 1.22325 0.96612 0.88580 0.93127 1.60820 1.17052 1.12370 1.40040 1.21696 0.96351 0.95616 0.88317 1.22060 0.96597 0.99201 0.99049 1.21581 0.99605 0.98555 0.94569 1.18648 0.91789 0.91070 0.95417 1.21240 1.30258 1.10754 0.92931 0.92926 1.24959 0.96141 0.97117 0.95735 1.69884 1.35679 1.24636 1.22658 0.86667 0.78917 0.79028 0.83809 1.20777 1.21296 1.20032 1.21634 1.00702 0.99118 0.93424 1.21600 0.97457 0.95309 0.99281 1.23041 1.00740 0.96880 0.97839 1.23430 0.96808 0.98912 0.84378 1.89108 1.83179 1.26212 1.30910 1.24382 1.00339 0.83304 0.98117 0.92052 0.92331 0.91443 0.84464 0.92454 0.94120 0.92016 0.93570 0.93489 0.95723 0.93123 0.88994 0.95170 0.92747 0.93827 0.89713 0.90152 0.92539 0.89244 0.89001 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.12 37.15 0.30 -1.34 16 2 C 0.09 1.05 0.91 -130.03 -0.12 0.93 16 3 N -0.67 -9.16 5.99 -91.47 -0.55 -9.71 16 4 C 0.09 1.44 1.59 -67.71 -0.11 1.33 16 5 C -0.13 -2.19 5.01 -26.73 -0.13 -2.32 16 6 C -0.10 -2.14 5.14 -26.73 -0.14 -2.28 16 7 C 0.05 1.20 2.10 -91.77 -0.19 1.01 16 8 C -0.51 -14.07 8.56 -34.44 -0.29 -14.36 16 9 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 10 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 11 N -0.89 -25.37 11.32 55.43 0.63 -24.75 16 12 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 C -0.11 -2.56 4.98 -26.73 -0.13 -2.69 16 17 C -0.10 -1.89 5.53 -26.73 -0.15 -2.03 16 18 C -0.15 -1.48 6.44 -25.17 -0.16 -1.64 16 19 C 0.04 0.42 7.63 37.93 0.29 0.70 16 20 O -0.38 -4.93 11.65 -35.23 -0.41 -5.34 16 21 C 0.02 0.22 5.65 37.93 0.21 0.44 16 22 H 0.06 0.83 6.86 -51.93 -0.36 0.47 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.34 4.24 7.99 -39.29 -0.31 3.93 16 26 H 0.06 0.95 5.62 -51.93 -0.29 0.66 16 27 H 0.04 0.60 7.52 -51.93 -0.39 0.21 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.80 7.90 -51.93 -0.41 0.39 16 38 H 0.08 0.76 7.73 -51.93 -0.40 0.36 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.20 7.65 -51.93 -0.40 0.80 16 42 H 0.06 0.75 7.39 -51.93 -0.38 0.37 16 LS Contribution 317.12 15.07 4.78 4.78 Total: -1.00 -28.19 317.12 -8.74 -36.93 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.45 Total: 2.46 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -0.72 Total: -20.66 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.08 Total: -34.46 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.41 Total: -5.34 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.19 -8.74 -36.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.482 kcal (2) G-P(sol) polarization free energy of solvation -28.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds