Wall clock time and date at job start Sun Mar 29 2020 23:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 110.45418 * 2 1 4 4 C 1.46903 * 110.99499 * 297.13201 * 3 2 1 5 5 C 1.53000 * 109.46930 * 237.57093 * 4 3 2 6 6 C 1.52997 * 109.46886 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47197 * 60.00302 * 6 5 4 8 8 C 1.50703 * 109.46855 * 180.02562 * 7 6 5 9 9 H 1.07993 * 120.00298 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99727 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99713 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00129 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47197 * 89.99701 * 12 10 8 14 14 H 1.48494 * 109.47029 * 210.00120 * 12 10 8 15 15 H 1.48500 * 109.46832 * 329.99629 * 12 10 8 16 16 C 1.53000 * 109.46956 * 299.99655 * 7 6 5 17 17 C 1.52997 * 109.46886 * 60.00155 * 16 7 6 18 18 C 1.54511 * 110.51234 * 122.59849 * 2 1 3 19 19 C 1.54472 * 104.06302 * 118.78586 * 18 2 1 20 20 O 1.44429 * 104.80544 * 336.02324 * 19 18 2 21 21 C 1.44421 * 105.27238 * 40.51050 * 20 19 18 22 22 H 1.08998 * 109.46910 * 65.06973 * 1 2 3 23 23 H 1.09005 * 109.47215 * 185.06265 * 1 2 3 24 24 H 1.08994 * 109.47735 * 305.06216 * 1 2 3 25 25 H 1.00900 * 110.99795 * 173.18502 * 3 2 1 26 26 H 1.08998 * 109.47360 * 357.57339 * 4 3 2 27 27 H 1.09001 * 109.46772 * 60.00626 * 5 4 3 28 28 H 1.08998 * 109.47300 * 300.00283 * 5 4 3 29 29 H 1.08998 * 109.47104 * 300.00062 * 6 5 4 30 30 H 1.08999 * 109.47455 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47290 * 59.99874 * 7 6 5 32 32 H 0.97008 * 119.99748 * 180.02562 * 11 10 8 33 33 H 1.09001 * 109.46772 * 179.97438 * 16 7 6 34 34 H 1.08998 * 109.47300 * 300.00212 * 16 7 6 35 35 H 1.08998 * 109.47104 * 59.99937 * 17 16 7 36 36 H 1.08997 * 109.47064 * 179.97438 * 17 16 7 37 37 H 1.08997 * 110.51495 * 237.43536 * 18 2 1 38 38 H 1.09001 * 110.51020 * 0.02562 * 18 2 1 39 39 H 1.08994 * 110.37437 * 94.85277 * 19 18 2 40 40 H 1.09003 * 110.37306 * 217.08163 * 19 18 2 41 41 H 1.09002 * 110.37271 * 200.66255 * 21 20 19 42 42 H 1.08998 * 110.37384 * 78.32345 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0433 1.3764 0.0000 4 6 1.6412 2.0882 -1.2206 5 6 2.8877 2.5891 -1.9529 6 6 2.4689 3.3309 -3.2238 7 6 1.5835 4.5216 -2.8509 8 6 1.1705 5.2519 -4.1029 9 1 1.5056 4.9015 -5.0679 10 6 0.3647 6.3674 -4.0162 11 7 -0.0438 6.7938 -2.8410 12 14 -0.1479 7.2722 -5.5680 13 1 -1.4194 6.6993 -6.0779 14 1 -0.3419 8.7119 -5.2602 15 1 0.9103 7.1248 -6.5993 16 6 0.3370 4.0207 -2.1186 17 6 0.7558 3.2789 -0.8477 18 6 2.0714 -0.7796 1.2192 19 6 2.8787 -1.9392 0.5948 20 8 2.3120 -2.1166 -0.7217 21 6 2.0743 -0.7808 -1.2167 22 1 -0.3633 0.4332 -0.9319 23 1 -0.3634 -1.0237 0.0907 24 1 -0.3634 0.5903 0.8411 25 1 3.0460 1.3883 0.1118 26 1 1.0859 1.4112 -1.8697 27 1 3.5187 1.7407 -2.2182 28 1 3.4430 3.2660 -1.3038 29 1 1.9134 2.6542 -3.8731 30 1 3.3569 3.6874 -3.7458 31 1 2.1390 5.1983 -2.2017 32 1 -0.6110 7.5784 -2.7801 33 1 -0.2936 4.8691 -1.8526 34 1 -0.2186 3.3441 -2.7679 35 1 1.3113 3.9556 -0.1985 36 1 -0.1322 2.9225 -0.3258 37 1 2.7199 -0.1438 1.8219 38 1 1.2490 -1.1655 1.8217 39 1 3.9326 -1.6713 0.5212 40 1 2.7590 -2.8467 1.1867 41 1 1.3350 -0.7988 -2.0175 42 1 3.0049 -0.3352 -1.5681 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:50 Heat of formation + Delta-G solvation = -84.866583 kcal Electronic energy + Delta-G solvation = -19877.778586 eV Core-core repulsion = 17048.765529 eV Total energy + Delta-G solvation = -2829.013057 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.15088 -39.26338 -36.44846 -34.49259 -32.28750 -31.41414 -30.55251 -29.26202 -27.28910 -26.08514 -23.71293 -23.22436 -22.11020 -20.63348 -20.28838 -18.38703 -17.48410 -17.20214 -16.65076 -16.30495 -15.98588 -15.41263 -14.97358 -14.71662 -14.59566 -14.37191 -13.98332 -13.64025 -13.33989 -13.23682 -12.94565 -12.88067 -12.82268 -12.54160 -12.33866 -12.21683 -12.02463 -12.00021 -11.78295 -11.63301 -11.55932 -11.12409 -10.82887 -10.66789 -10.52303 -10.33043 -9.29041 -8.05709 -6.19857 1.40663 1.41523 1.51352 2.44218 2.85224 3.20323 3.35095 3.57350 3.77346 3.94614 3.96271 4.12119 4.22512 4.28648 4.39597 4.56903 4.65399 4.67237 4.70306 4.77714 4.82541 4.86691 4.87919 4.91917 4.99172 5.02319 5.08311 5.17890 5.19349 5.29650 5.35239 5.42724 5.52583 5.63585 5.73339 5.78964 6.06207 6.14635 6.26807 6.43875 6.54436 6.93441 7.48123 8.97892 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.045882 B = 0.004669 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.119610 B = 5995.910565 C = 6164.307887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.084 3.916 3 N -0.669 5.669 4 C 0.103 3.897 5 C -0.122 4.122 6 C -0.099 4.099 7 C 0.046 3.954 8 C -0.536 4.536 9 H 0.049 0.951 10 C 0.013 3.987 11 N -0.916 5.916 12 Si 0.950 3.050 13 H -0.276 1.276 14 H -0.284 1.284 15 H -0.269 1.269 16 C -0.101 4.101 17 C -0.088 4.088 18 C -0.140 4.140 19 C 0.039 3.961 20 O -0.395 6.395 21 C 0.019 3.981 22 H 0.045 0.955 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.347 0.653 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.045 0.955 31 H -0.008 1.008 32 H 0.259 0.741 33 H 0.055 0.945 34 H 0.023 0.977 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.699 -15.529 7.908 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.008 4.008 3 N -0.301 5.301 4 C -0.007 4.007 5 C -0.160 4.160 6 C -0.137 4.137 7 C 0.027 3.973 8 C -0.574 4.574 9 H 0.067 0.933 10 C -0.186 4.186 11 N -0.556 5.556 12 Si 0.776 3.224 13 H -0.202 1.202 14 H -0.209 1.209 15 H -0.194 1.194 16 C -0.140 4.140 17 C -0.126 4.126 18 C -0.178 4.178 19 C -0.038 4.038 20 O -0.314 6.314 21 C -0.060 4.060 22 H 0.064 0.936 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.167 0.833 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.010 0.990 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.042 -15.358 8.270 17.905 hybrid contribution 0.117 0.841 -1.506 1.729 sum 4.158 -14.517 6.764 16.547 Atomic orbital electron populations 1.21816 0.92960 1.01993 1.02085 1.22380 0.96342 0.87739 0.94317 1.60669 1.17911 1.13323 1.38196 1.21374 0.95495 0.94498 0.89293 1.21969 0.97145 0.99782 0.97121 1.21445 0.98640 0.97182 0.96478 1.18620 0.92627 0.92051 0.93970 1.21650 1.30459 1.11478 0.93853 0.93256 1.25722 0.96224 0.98011 0.98624 1.70031 1.36094 1.24927 1.24499 0.85685 0.78660 0.77772 0.80320 1.20212 1.20946 1.19380 1.21415 0.99522 0.98016 0.95066 1.21431 0.98288 0.96024 0.96867 1.23016 1.01176 0.96698 0.96933 1.23633 0.97171 0.99764 0.83201 1.89095 1.83560 1.26263 1.32444 1.24318 1.00173 0.83484 0.98016 0.93584 0.91129 0.91790 0.83278 0.92497 0.91060 0.92099 0.93563 0.93595 0.98982 0.93178 0.92625 0.95839 0.93924 0.93190 0.88767 0.89310 0.91461 0.87371 0.89805 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.12 71.98 0.58 -2.46 16 2 C 0.08 1.85 0.91 4.54 0.00 1.85 16 3 N -0.67 -16.72 5.99 -443.32 -2.65 -19.37 16 4 C 0.10 3.19 1.59 44.92 0.07 3.26 16 5 C -0.12 -3.88 5.01 30.59 0.15 -3.72 16 6 C -0.10 -4.01 5.14 30.59 0.16 -3.85 16 7 C 0.05 2.30 2.10 -11.54 -0.02 2.27 16 8 C -0.54 -29.98 8.56 25.60 0.22 -29.76 16 9 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 10 C 0.01 0.71 5.30 84.66 0.45 1.16 16 11 N -0.92 -53.69 11.32 21.45 0.24 -53.45 16 12 Si 0.95 44.16 29.54 68.60 2.03 46.18 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 16 C -0.10 -4.85 4.98 30.59 0.15 -4.70 16 17 C -0.09 -3.38 5.53 30.59 0.17 -3.21 16 18 C -0.14 -2.38 6.44 31.61 0.20 -2.18 16 19 C 0.04 0.64 7.63 72.48 0.55 1.20 16 20 O -0.40 -9.36 11.65 -148.98 -1.74 -11.10 16 21 C 0.02 0.44 5.65 72.48 0.41 0.85 16 22 H 0.05 1.20 6.86 -2.39 -0.02 1.18 16 23 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 24 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.35 7.68 7.99 -89.69 -0.72 6.96 16 26 H 0.06 1.81 5.62 -2.39 -0.01 1.80 16 27 H 0.07 1.88 7.52 -2.39 -0.02 1.86 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 32 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 33 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 34 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.09 1.45 7.90 -2.39 -0.02 1.43 16 38 H 0.09 1.38 7.73 -2.39 -0.02 1.36 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 40 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 2.05 7.65 -2.39 -0.02 2.04 16 42 H 0.06 1.37 7.39 -2.39 -0.02 1.35 16 Total: -1.00 -61.38 317.12 1.24 -60.13 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.26 Total: 16.89 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 3.10 Total: -39.29 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -2.41 Total: -72.82 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -1.74 Total: -11.10 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -61.38 1.24 -60.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.732 kcal (2) G-P(sol) polarization free energy of solvation -61.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds