Wall clock time and date at job start Sun Mar 29 2020 23:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99706 * 2 1 4 4 H 1.48493 * 109.46935 * 90.00116 * 3 2 1 5 5 H 1.48498 * 109.46891 * 329.99701 * 3 2 1 6 6 H 1.48500 * 109.46838 * 210.00009 * 3 2 1 7 7 C 1.37878 * 120.00379 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47056 * 180.02562 * 9 7 2 11 11 N 1.46167 * 109.46966 * 174.33415 * 10 9 7 12 12 C 1.46501 * 110.93248 * 45.71974 * 11 10 9 13 13 C 1.52869 * 110.39985 * 190.58314 * 12 11 10 14 14 C 1.53148 * 109.13126 * 303.66670 * 13 12 11 15 15 C 1.52753 * 108.96981 * 57.85022 * 14 13 12 16 16 C 1.45855 * 114.71485 * 176.13114 * 11 10 9 17 17 C 1.52407 * 111.71150 * 54.47308 * 16 11 10 18 18 C 1.51823 * 115.20842 * 271.36652 * 17 16 11 19 19 C 1.52738 * 111.54359 * 317.49896 * 18 17 16 20 20 O 1.43079 * 108.42630 * 54.75270 * 19 18 17 21 21 C 1.42562 * 112.64361 * 293.44527 * 20 19 18 22 22 H 0.96999 * 119.99365 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46815 * 300.00206 * 9 7 2 24 24 H 1.08995 * 109.46860 * 59.99904 * 9 7 2 25 25 H 1.09002 * 109.46920 * 294.33230 * 10 9 7 26 26 H 1.08996 * 109.47318 * 54.33237 * 10 9 7 27 27 H 1.09497 * 109.04056 * 310.23980 * 12 11 10 28 28 H 1.08890 * 110.16900 * 69.17845 * 12 11 10 29 29 H 1.09007 * 109.58816 * 183.80280 * 13 12 11 30 30 H 1.08980 * 109.61707 * 63.60107 * 13 12 11 31 31 H 1.08927 * 109.63275 * 297.38957 * 14 13 12 32 32 H 1.09133 * 109.32194 * 177.62086 * 14 13 12 33 33 H 1.08723 * 110.10561 * 180.56869 * 15 14 13 34 34 H 1.08777 * 110.10301 * 58.80303 * 15 14 13 35 35 H 1.09955 * 108.95093 * 34.53712 * 17 16 11 36 36 H 1.10307 * 108.27653 * 149.54413 * 17 16 11 37 37 H 1.10197 * 108.85152 * 198.23100 * 18 17 16 38 38 H 1.08952 * 111.28358 * 80.60515 * 18 17 16 39 39 H 1.08911 * 109.82851 * 295.13104 * 19 18 17 40 40 H 1.08908 * 109.85000 * 174.36910 * 19 18 17 41 41 H 1.09688 * 108.69859 * 302.29662 * 21 20 19 42 42 H 1.09137 * 109.28653 * 184.82374 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 1.4000 5 1 1.4465 2.6527 -0.7001 6 1 3.5466 1.4403 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5198 -4.9235 0.1355 12 6 0.3602 -4.9595 -0.7592 13 6 -0.5329 -6.1546 -0.4262 14 6 0.2972 -7.4391 -0.5058 15 6 1.4754 -7.3297 0.4602 16 6 2.3535 -6.1179 0.0598 17 6 3.4955 -6.0732 1.0682 18 6 4.7681 -5.4085 0.5747 19 6 5.1016 -5.8277 -0.8556 20 8 3.9669 -5.5544 -1.6832 21 6 2.8432 -6.3704 -1.3609 22 1 -0.4849 -0.8401 -0.0004 23 1 0.6248 -2.5571 0.8897 24 1 0.6242 -2.5567 -0.8902 25 1 2.8034 -3.6630 -0.9369 26 1 2.9370 -3.5488 0.8343 27 1 -0.2173 -4.0379 -0.6326 28 1 0.6877 -5.0219 -1.7958 29 1 -1.3540 -6.2077 -1.1412 30 1 -0.9340 -6.0422 0.5809 31 1 0.6608 -7.5774 -1.5233 32 1 -0.3268 -8.2901 -0.2275 33 1 2.0838 -8.2294 0.4111 34 1 1.1141 -7.1744 1.4744 35 1 3.1487 -5.5623 1.9780 36 1 3.7321 -7.1077 1.3689 37 1 5.6039 -5.7124 1.2254 38 1 4.6966 -4.3230 0.6356 39 1 5.3255 -6.8931 -0.8857 40 1 5.9593 -5.2617 -1.2165 41 1 3.1346 -7.4236 -1.4564 42 1 2.0416 -6.1789 -2.0763 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001648662332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:27 Heat of formation + Delta-G solvation = -60.464096 kcal Electronic energy + Delta-G solvation = -20557.694153 eV Core-core repulsion = 17729.739267 eV Total energy + Delta-G solvation = -2827.954886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.43964 -37.30359 -34.48315 -33.43536 -32.48588 -31.13827 -28.74621 -26.70083 -25.32834 -24.57956 -23.27186 -22.35319 -20.39603 -20.04989 -18.48960 -16.79094 -16.24526 -15.95601 -15.18728 -14.95868 -14.63456 -14.18023 -13.70242 -13.65738 -13.37775 -13.12093 -12.83016 -12.54032 -12.36905 -12.01233 -11.87702 -11.41792 -11.19213 -11.12408 -10.90865 -10.82885 -10.53850 -10.43370 -10.29095 -10.07087 -9.91701 -9.80889 -9.51493 -9.31182 -8.47560 -8.24437 -7.37435 -6.29524 -3.96960 3.47347 3.51516 3.67093 4.03351 4.30110 4.61506 4.77157 4.78568 4.99991 5.07520 5.09627 5.13736 5.28338 5.39252 5.43275 5.48270 5.50050 5.60375 5.70574 5.76702 5.82142 5.96784 5.98677 6.06340 6.07752 6.15586 6.27721 6.28479 6.34102 6.41712 6.52676 6.59735 6.70402 6.98238 7.28187 7.42573 7.56756 7.85417 7.98675 8.34685 8.54500 8.96715 9.74575 11.11650 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.022792 B = 0.006903 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.210420 B = 4054.974382 C = 4858.856952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 1.070 2.930 4 H -0.288 1.288 5 H -0.285 1.285 6 H -0.289 1.289 7 C -0.597 4.597 8 H 0.047 0.953 9 C 0.010 3.990 10 C 0.082 3.918 11 N -0.548 5.548 12 C 0.057 3.943 13 C -0.117 4.117 14 C -0.121 4.121 15 C -0.109 4.109 16 C 0.105 3.895 17 C -0.103 4.103 18 C -0.156 4.156 19 C 0.061 3.939 20 O -0.371 6.371 21 C 0.036 3.964 22 H 0.268 0.732 23 H 0.013 0.987 24 H 0.008 0.992 25 H 0.033 0.967 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.026 0.974 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.090 0.910 41 H 0.041 0.959 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 -16.494 -0.227 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.189 4.189 3 Si 0.899 3.101 4 H -0.215 1.215 5 H -0.211 1.211 6 H -0.215 1.215 7 C -0.636 4.636 8 H 0.065 0.935 9 C -0.027 4.027 10 C -0.044 4.044 11 N -0.273 5.273 12 C -0.070 4.070 13 C -0.155 4.155 14 C -0.159 4.159 15 C -0.147 4.147 16 C 0.015 3.985 17 C -0.141 4.141 18 C -0.193 4.193 19 C -0.016 4.016 20 O -0.289 6.289 21 C -0.042 4.042 22 H 0.079 0.921 23 H 0.031 0.969 24 H 0.026 0.974 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.060 0.940 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.048 -14.720 0.061 15.561 hybrid contribution 0.552 -1.901 -0.511 2.045 sum 5.600 -16.621 -0.450 17.545 Atomic orbital electron populations 1.70746 1.06860 1.30561 1.47011 1.25803 0.96564 1.02593 0.93922 0.83528 0.74692 0.75195 0.76677 1.21513 1.21050 1.21539 1.22032 0.94261 0.91989 1.55316 0.93452 1.19367 0.94815 0.92533 0.96024 1.21935 0.96608 0.86453 0.99372 1.59581 1.10363 1.01740 1.55640 1.21986 0.92116 0.99311 0.93611 1.21606 0.97500 0.94235 1.02129 1.21550 0.97140 0.97980 0.99236 1.22035 0.96321 0.96044 1.00281 1.21122 0.92600 0.91335 0.93476 1.21285 0.93407 1.00578 0.98806 1.21977 0.97614 1.02803 0.96930 1.22512 0.89198 0.99352 0.90547 1.88097 1.21372 1.62086 1.57390 1.23248 0.89380 0.93704 0.97912 0.92119 0.96869 0.97439 0.94870 0.92223 0.89293 0.95592 0.92012 0.91317 0.92430 0.92311 0.92269 0.90856 0.90601 0.92368 0.91785 0.90267 0.93645 0.89172 0.94038 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.62 13.65 55.43 0.76 -27.87 16 2 C 0.01 0.43 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 26.04 29.90 -169.99 -5.08 20.96 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.60 -17.53 9.11 -34.44 -0.31 -17.85 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.01 0.26 3.28 -27.88 -0.09 0.17 16 10 C 0.08 1.82 4.04 -4.22 -0.02 1.80 16 11 N -0.55 -10.08 4.10 -220.14 -0.90 -10.98 16 12 C 0.06 1.01 4.64 -4.11 -0.02 0.99 16 13 C -0.12 -1.63 6.12 -26.72 -0.16 -1.79 16 14 C -0.12 -1.45 5.67 -26.78 -0.15 -1.61 16 15 C -0.11 -1.36 4.36 -25.85 -0.11 -1.47 16 16 C 0.11 1.58 0.53 -131.78 -0.07 1.51 16 17 C -0.10 -1.43 4.18 -27.63 -0.12 -1.54 16 18 C -0.16 -2.11 5.52 -27.46 -0.15 -2.26 16 19 C 0.06 0.80 6.87 37.02 0.25 1.06 16 20 O -0.37 -6.20 9.34 -35.23 -0.33 -6.53 16 21 C 0.04 0.54 4.39 36.84 0.16 0.70 16 22 H 0.27 8.36 7.22 -40.82 -0.29 8.07 16 23 H 0.01 0.37 8.01 -51.93 -0.42 -0.05 16 24 H 0.01 0.21 6.34 -51.93 -0.33 -0.12 16 25 H 0.03 0.78 6.57 -51.93 -0.34 0.44 16 26 H 0.06 1.34 6.05 -51.93 -0.31 1.02 16 27 H 0.09 1.80 5.62 -51.65 -0.29 1.51 16 28 H 0.03 0.47 6.41 -51.99 -0.33 0.13 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.99 8.14 -51.94 -0.42 0.57 16 31 H 0.06 0.67 6.68 -51.97 -0.35 0.32 16 32 H 0.06 0.61 8.15 -51.85 -0.42 0.18 16 33 H 0.06 0.63 7.78 -52.08 -0.41 0.23 16 34 H 0.07 0.96 8.12 -52.05 -0.42 0.54 16 35 H 0.08 1.15 8.09 -51.39 -0.42 0.74 16 36 H 0.06 0.67 7.63 -51.18 -0.39 0.28 16 37 H 0.06 0.71 8.24 -51.25 -0.42 0.29 16 38 H 0.08 1.27 6.47 -51.96 -0.34 0.93 16 39 H 0.05 0.51 8.04 -51.98 -0.42 0.09 16 40 H 0.09 1.09 8.13 -51.98 -0.42 0.67 16 41 H 0.04 0.53 7.80 -51.54 -0.40 0.13 16 42 H 0.09 1.44 5.17 -51.85 -0.27 1.17 16 LS Contribution 303.05 15.07 4.57 4.57 Total: -1.00 -31.55 303.05 -8.92 -40.47 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.04 Total: -0.66 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -0.89 Total: -19.97 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: -0.15 Total: -38.84 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.33 Total: -6.53 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.08 Total: 20.96 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.55 -8.92 -40.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648662332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.994 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds