Wall clock time and date at job start Sun Mar 29 2020 23:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99706 * 2 1 4 4 H 1.48493 * 109.46935 * 90.00116 * 3 2 1 5 5 H 1.48498 * 109.46891 * 329.99701 * 3 2 1 6 6 H 1.48500 * 109.46838 * 210.00009 * 3 2 1 7 7 C 1.37878 * 120.00379 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47056 * 180.02562 * 9 7 2 11 11 N 1.46167 * 109.46966 * 174.33415 * 10 9 7 12 12 C 1.46501 * 110.93248 * 45.71974 * 11 10 9 13 13 C 1.52869 * 110.39985 * 190.58314 * 12 11 10 14 14 C 1.53148 * 109.13126 * 303.66670 * 13 12 11 15 15 C 1.52753 * 108.96981 * 57.85022 * 14 13 12 16 16 C 1.45855 * 114.71485 * 176.13114 * 11 10 9 17 17 C 1.52407 * 111.71150 * 54.47308 * 16 11 10 18 18 C 1.51823 * 115.20842 * 271.36652 * 17 16 11 19 19 C 1.52738 * 111.54359 * 317.49896 * 18 17 16 20 20 O 1.43079 * 108.42630 * 54.75270 * 19 18 17 21 21 C 1.42562 * 112.64361 * 293.44527 * 20 19 18 22 22 H 0.96999 * 119.99365 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46815 * 300.00206 * 9 7 2 24 24 H 1.08995 * 109.46860 * 59.99904 * 9 7 2 25 25 H 1.09002 * 109.46920 * 294.33230 * 10 9 7 26 26 H 1.08996 * 109.47318 * 54.33237 * 10 9 7 27 27 H 1.09497 * 109.04056 * 310.23980 * 12 11 10 28 28 H 1.08890 * 110.16900 * 69.17845 * 12 11 10 29 29 H 1.09007 * 109.58816 * 183.80280 * 13 12 11 30 30 H 1.08980 * 109.61707 * 63.60107 * 13 12 11 31 31 H 1.08927 * 109.63275 * 297.38957 * 14 13 12 32 32 H 1.09133 * 109.32194 * 177.62086 * 14 13 12 33 33 H 1.08723 * 110.10561 * 180.56869 * 15 14 13 34 34 H 1.08777 * 110.10301 * 58.80303 * 15 14 13 35 35 H 1.09955 * 108.95093 * 34.53712 * 17 16 11 36 36 H 1.10307 * 108.27653 * 149.54413 * 17 16 11 37 37 H 1.10197 * 108.85152 * 198.23100 * 18 17 16 38 38 H 1.08952 * 111.28358 * 80.60515 * 18 17 16 39 39 H 1.08911 * 109.82851 * 295.13104 * 19 18 17 40 40 H 1.08908 * 109.85000 * 174.36910 * 19 18 17 41 41 H 1.09688 * 108.69859 * 302.29662 * 21 20 19 42 42 H 1.09137 * 109.28653 * 184.82374 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 1.4000 5 1 1.4465 2.6527 -0.7001 6 1 3.5466 1.4403 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5198 -4.9235 0.1355 12 6 0.3602 -4.9595 -0.7592 13 6 -0.5329 -6.1546 -0.4262 14 6 0.2972 -7.4391 -0.5058 15 6 1.4754 -7.3297 0.4602 16 6 2.3535 -6.1179 0.0598 17 6 3.4955 -6.0732 1.0682 18 6 4.7681 -5.4085 0.5747 19 6 5.1016 -5.8277 -0.8556 20 8 3.9669 -5.5544 -1.6832 21 6 2.8432 -6.3704 -1.3609 22 1 -0.4849 -0.8401 -0.0004 23 1 0.6248 -2.5571 0.8897 24 1 0.6242 -2.5567 -0.8902 25 1 2.8034 -3.6630 -0.9369 26 1 2.9370 -3.5488 0.8343 27 1 -0.2173 -4.0379 -0.6326 28 1 0.6877 -5.0219 -1.7958 29 1 -1.3540 -6.2077 -1.1412 30 1 -0.9340 -6.0422 0.5809 31 1 0.6608 -7.5774 -1.5233 32 1 -0.3268 -8.2901 -0.2275 33 1 2.0838 -8.2294 0.4111 34 1 1.1141 -7.1744 1.4744 35 1 3.1487 -5.5623 1.9780 36 1 3.7321 -7.1077 1.3689 37 1 5.6039 -5.7124 1.2254 38 1 4.6966 -4.3230 0.6356 39 1 5.3255 -6.8931 -0.8857 40 1 5.9593 -5.2617 -1.2165 41 1 3.1346 -7.4236 -1.4564 42 1 2.0416 -6.1789 -2.0763 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001648662332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:26 Heat of formation + Delta-G solvation = -81.063643 kcal Electronic energy + Delta-G solvation = -20558.587416 eV Core-core repulsion = 17729.739267 eV Total energy + Delta-G solvation = -2828.848150 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.66587 -38.53834 -36.33092 -34.62340 -34.31801 -32.27983 -30.58524 -27.98830 -26.49693 -26.19424 -25.09026 -23.54811 -22.10376 -21.22767 -19.75065 -18.87214 -17.57397 -17.13668 -16.59741 -16.28680 -15.79961 -15.65958 -15.44989 -15.07497 -14.85204 -14.49496 -14.25757 -13.87222 -13.68239 -13.54164 -13.35672 -12.85989 -12.73978 -12.53811 -12.22155 -12.13928 -12.09663 -11.96917 -11.90785 -11.54898 -11.27857 -11.02836 -10.90802 -10.74214 -10.62622 -10.54038 -8.86492 -8.71686 -6.40971 1.49247 1.59501 1.77448 2.53668 2.89375 3.01157 3.13960 3.66685 3.72566 3.90319 3.96057 4.01661 4.03632 4.24169 4.27703 4.35997 4.41656 4.44787 4.53555 4.55597 4.61548 4.62376 4.82640 4.84088 4.92392 4.95951 5.03289 5.04863 5.06900 5.17810 5.21242 5.23438 5.26326 5.37719 5.42846 5.53365 5.92567 6.15544 6.18776 6.32624 6.51928 6.60214 7.40858 8.69244 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.022792 B = 0.006903 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.210420 B = 4054.974382 C = 4858.856952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.038 4.038 3 Si 1.121 2.879 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.618 4.618 8 H 0.045 0.955 9 C 0.019 3.981 10 C 0.109 3.891 11 N -0.554 5.554 12 C 0.059 3.941 13 C -0.111 4.111 14 C -0.117 4.117 15 C -0.102 4.102 16 C 0.094 3.906 17 C -0.105 4.105 18 C -0.156 4.156 19 C 0.057 3.943 20 O -0.406 6.406 21 C 0.036 3.964 22 H 0.254 0.746 23 H -0.012 1.012 24 H -0.011 1.011 25 H 0.016 0.984 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.019 0.981 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.798 -18.663 -0.012 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.235 4.235 3 Si 0.941 3.059 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.656 4.656 8 H 0.064 0.936 9 C -0.018 4.018 10 C -0.018 4.018 11 N -0.279 5.279 12 C -0.069 4.069 13 C -0.149 4.149 14 C -0.154 4.154 15 C -0.140 4.140 16 C 0.004 3.996 17 C -0.143 4.143 18 C -0.194 4.194 19 C -0.019 4.019 20 O -0.325 6.325 21 C -0.042 4.042 22 H 0.064 0.936 23 H 0.006 0.994 24 H 0.007 0.993 25 H 0.034 0.966 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.456 -16.932 0.282 18.123 hybrid contribution 0.107 -1.263 -0.581 1.394 sum 6.563 -18.195 -0.299 19.345 Atomic orbital electron populations 1.70882 1.07866 1.29756 1.48778 1.27469 0.96622 1.06789 0.92597 0.82908 0.74115 0.70909 0.77953 1.19497 1.20510 1.19587 1.22445 0.94469 0.93511 1.55208 0.93614 1.19210 0.94925 0.93862 0.93802 1.21427 0.95052 0.87278 0.98090 1.59553 1.10819 1.01607 1.55889 1.21936 0.92128 0.99535 0.93258 1.21567 0.97457 0.93751 1.02081 1.21549 0.96976 0.97221 0.99690 1.22046 0.96385 0.95696 0.99888 1.21412 0.93297 0.90444 0.94406 1.21335 0.92982 1.02448 0.97517 1.21966 0.98729 1.00555 0.98156 1.22711 0.88286 1.01320 0.89553 1.88055 1.22693 1.63208 1.58515 1.23251 0.88812 0.95134 0.96980 0.93644 0.99403 0.99302 0.96557 0.92869 0.93331 0.96296 0.90548 0.91934 0.91715 0.89545 0.88985 0.91431 0.92574 0.88768 0.88867 0.93908 0.90578 0.88607 0.90791 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.42 13.65 21.45 0.29 -60.13 16 2 C -0.04 -2.28 5.46 84.65 0.46 -1.82 16 3 Si 1.12 52.53 29.90 68.60 2.05 54.58 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.62 -37.67 9.11 25.60 0.23 -37.43 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.02 1.08 3.28 29.85 0.10 1.18 16 10 C 0.11 5.05 4.04 86.44 0.35 5.40 16 11 N -0.55 -20.86 4.10 -850.38 -3.49 -24.34 16 12 C 0.06 2.17 4.64 86.34 0.40 2.57 16 13 C -0.11 -3.01 6.12 30.60 0.19 -2.82 16 14 C -0.12 -2.43 5.67 30.56 0.17 -2.26 16 15 C -0.10 -2.21 4.36 31.17 0.14 -2.07 16 16 C 0.09 2.67 0.53 3.98 0.00 2.67 16 17 C -0.11 -2.71 4.18 30.01 0.13 -2.58 16 18 C -0.16 -4.01 5.52 30.12 0.17 -3.85 16 19 C 0.06 1.40 6.87 71.90 0.49 1.89 16 20 O -0.41 -13.16 9.34 -148.98 -1.39 -14.55 16 21 C 0.04 1.01 4.39 71.78 0.32 1.33 16 22 H 0.25 16.71 7.22 -92.71 -0.67 16.04 16 23 H -0.01 -0.75 8.01 -2.39 -0.02 -0.77 16 24 H -0.01 -0.66 6.34 -2.39 -0.02 -0.68 16 25 H 0.02 0.80 6.57 -2.39 -0.02 0.79 16 26 H 0.05 2.51 6.05 -2.39 -0.01 2.50 16 27 H 0.05 2.13 5.62 -2.12 -0.01 2.12 16 28 H 0.02 0.71 6.41 -2.45 -0.02 0.70 16 29 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.06 1.77 8.14 -2.40 -0.02 1.75 16 31 H 0.06 1.29 6.68 -2.43 -0.02 1.27 16 32 H 0.09 1.40 8.15 -2.32 -0.02 1.38 16 33 H 0.09 1.45 7.78 -2.53 -0.02 1.43 16 34 H 0.07 1.57 8.12 -2.50 -0.02 1.55 16 35 H 0.06 1.66 8.09 -1.88 -0.02 1.65 16 36 H 0.09 1.77 7.63 -1.69 -0.01 1.75 16 37 H 0.09 1.82 8.24 -1.75 -0.01 1.80 16 38 H 0.04 1.39 6.47 -2.41 -0.02 1.38 16 39 H 0.08 1.40 8.04 -2.43 -0.02 1.38 16 40 H 0.10 2.17 8.13 -2.44 -0.02 2.15 16 41 H 0.07 1.58 7.80 -2.02 -0.02 1.56 16 42 H 0.08 2.36 5.17 -2.31 -0.01 2.34 16 Total: -1.00 -71.64 303.05 1.70 -69.94 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.10 Total: 12.31 kcal Atomic # 6 Polarization: -40.94 SS G_CDS: 3.14 Total: -37.80 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -3.20 Total: -84.47 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -1.39 Total: -14.55 kcal Atomic # 14 Polarization: 52.53 SS G_CDS: 2.05 Total: 54.58 kcal Total: -71.64 1.70 -69.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648662332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.128 kcal (2) G-P(sol) polarization free energy of solvation -71.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds