Wall clock time and date at job start Sun Mar 29 2020 23:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00146 * 2 1 4 4 H 1.48504 * 109.47163 * 270.00239 * 3 2 1 5 5 H 1.48507 * 109.46881 * 29.99821 * 3 2 1 6 6 H 1.48501 * 109.47321 * 150.00121 * 3 2 1 7 7 C 1.37875 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00354 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99688 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46938 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47264 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47201 * 179.97438 * 11 10 9 13 13 C 1.46902 * 110.99582 * 178.32202 * 12 11 10 14 14 C 1.52996 * 112.85409 * 291.39090 * 13 12 11 15 15 H 1.09009 * 110.54905 * 75.36790 * 14 13 12 16 16 C 1.54994 * 110.61861 * 312.49445 * 14 13 12 17 17 C 1.54983 * 102.01181 * 204.59082 * 16 14 13 18 18 C 1.54097 * 104.25506 * 20.66689 * 17 16 14 19 19 O 1.43742 * 107.29232 * 2.16492 * 18 17 16 20 20 C 1.53784 * 113.60918 * 160.08700 * 13 12 11 21 21 C 1.53782 * 87.08112 * 220.01747 * 20 13 12 22 22 C 1.53782 * 113.61498 * 62.59182 * 13 12 11 23 23 H 0.96995 * 120.00082 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46881 * 60.00761 * 9 7 2 25 25 H 1.08993 * 109.46944 * 299.99930 * 9 7 2 26 26 H 1.09004 * 109.47454 * 300.00207 * 10 9 7 27 27 H 1.09006 * 109.46996 * 60.00000 * 10 9 7 28 28 H 1.08993 * 109.47553 * 300.00364 * 11 10 9 29 29 H 1.09010 * 109.46738 * 60.00497 * 11 10 9 30 30 H 1.00894 * 110.99843 * 54.37438 * 12 11 10 31 31 H 1.09000 * 110.90921 * 322.66901 * 16 14 13 32 32 H 1.09002 * 110.90902 * 86.27382 * 16 14 13 33 33 H 1.09009 * 110.34463 * 262.02527 * 17 16 14 34 34 H 1.09002 * 110.57223 * 139.41843 * 17 16 14 35 35 H 1.09002 * 109.87790 * 242.74243 * 18 17 16 36 36 H 1.08993 * 109.88288 * 121.58728 * 18 17 16 37 37 H 1.08997 * 113.61864 * 334.56571 * 20 13 12 38 38 H 1.09000 * 113.61226 * 105.47347 * 20 13 12 39 39 H 1.08998 * 113.61687 * 270.88743 * 21 20 13 40 40 H 1.08999 * 113.61445 * 139.98261 * 21 20 13 41 41 H 1.09000 * 113.61635 * 254.52553 * 22 13 12 42 42 H 1.09004 * 113.61405 * 25.43059 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4349 -6.1036 -0.0030 13 6 1.7351 -7.3946 0.0377 14 6 1.0312 -7.6471 1.3725 15 1 0.1217 -7.0505 1.4443 16 6 1.9814 -7.3384 2.5575 17 6 1.3858 -8.2181 3.6860 18 6 0.5619 -9.2856 2.9402 19 8 0.7326 -9.0506 1.5324 20 6 2.5947 -8.5765 -0.4409 21 6 1.3343 -9.1062 -1.1450 22 6 0.8418 -7.6500 -1.1878 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8713 -3.6039 -0.8923 27 1 2.8726 -3.6047 0.8877 28 1 0.8546 -5.0450 0.8894 29 1 0.8527 -5.0447 -0.8906 30 1 3.0880 -6.0222 0.7617 31 1 3.0024 -7.6424 2.3268 32 1 1.9420 -6.2819 2.8226 33 1 0.7415 -7.6212 4.3317 34 1 2.1806 -8.6865 4.2664 35 1 -0.4912 -9.1937 3.2062 36 1 0.9256 -10.2805 3.1966 37 1 3.3900 -8.2881 -1.1280 38 1 2.9447 -9.2176 0.3682 39 1 0.7237 -9.7553 -0.5174 40 1 1.5299 -9.5301 -2.1299 41 1 -0.2232 -7.5430 -0.9817 42 1 1.1580 -7.1081 -2.0792 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656524744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:59 Heat of formation + Delta-G solvation = -44.461214 kcal Electronic energy + Delta-G solvation = -19364.284714 eV Core-core repulsion = 16537.023765 eV Total energy + Delta-G solvation = -2827.260949 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.53297 -37.86112 -35.19761 -33.12701 -32.10108 -30.74346 -29.02746 -26.30877 -25.64849 -24.11556 -22.51230 -21.92502 -21.31743 -20.10706 -18.47915 -16.82288 -16.40283 -16.26611 -15.52161 -15.05821 -14.75009 -14.45224 -14.31955 -13.80744 -13.70822 -13.13104 -12.27916 -12.22200 -12.04506 -11.85134 -11.83901 -11.62614 -11.47479 -11.19395 -10.90261 -10.84685 -10.78586 -10.57815 -10.45094 -10.19684 -10.08209 -9.73605 -9.67884 -9.30134 -9.02975 -8.33123 -8.18446 -5.98254 -4.00338 3.33194 3.39191 3.42690 3.67299 4.30194 4.41025 4.46646 4.55127 4.70433 4.75940 4.87159 4.98658 5.04774 5.17268 5.31325 5.37610 5.49541 5.53154 5.60947 5.68044 5.76207 5.82852 5.88759 5.92201 5.95973 6.00926 6.08184 6.12569 6.33529 6.40493 6.59231 6.72272 6.73265 6.88115 7.14800 7.38781 7.64741 7.70150 7.85086 8.02219 8.45470 9.06929 9.63661 11.13203 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.030518 B = 0.004194 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.278467 B = 6674.497227 C = 7104.899637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.056 3.944 12 N -0.663 5.663 13 C 0.088 3.912 14 C 0.071 3.929 15 H 0.071 0.929 16 C -0.153 4.153 17 C -0.154 4.154 18 C 0.045 3.955 19 O -0.365 6.365 20 C -0.113 4.113 21 C -0.137 4.137 22 C -0.121 4.121 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.013 0.987 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.023 0.977 29 H 0.069 0.931 30 H 0.336 0.664 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 -19.541 4.318 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.072 4.072 12 N -0.293 5.293 13 C -0.004 4.004 14 C 0.011 3.989 15 H 0.089 0.911 16 C -0.190 4.190 17 C -0.192 4.192 18 C -0.032 4.032 19 O -0.283 6.283 20 C -0.151 4.151 21 C -0.174 4.174 22 C -0.159 4.159 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.225 -19.575 3.468 20.004 hybrid contribution 0.019 1.230 1.293 1.784 sum 2.244 -18.345 4.761 19.085 Atomic orbital electron populations 1.69966 1.06063 1.26538 1.51054 1.25025 0.94835 0.99240 0.95389 0.86604 0.79833 0.83499 0.78122 1.20643 1.21271 1.19894 1.21260 0.93044 0.91067 1.50317 0.92690 1.19057 0.93998 0.91368 0.97082 1.21638 0.99179 0.93075 1.00661 1.22138 0.94394 0.90631 1.00025 1.61070 1.17820 1.00355 1.50063 1.22272 0.95483 0.90645 0.92005 1.23490 0.97070 0.82936 0.95364 0.91138 1.23163 1.00229 1.00900 0.94747 1.22930 1.00142 0.97577 0.98542 1.23129 0.99053 0.99068 0.81984 1.88887 1.91829 1.24947 1.22624 1.22823 0.96829 0.95521 0.99887 1.22753 0.97964 0.96495 1.00216 1.22964 0.98535 0.96664 0.97747 0.93053 0.96575 0.96888 0.92519 0.93783 0.95867 0.91219 0.84532 0.90208 0.89958 0.90735 0.90574 0.92659 0.90124 0.89707 0.91733 0.89160 0.92015 0.91972 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.23 5.40 -26.73 -0.14 -2.38 16 11 C 0.06 0.98 5.34 -3.82 -0.02 0.96 16 12 N -0.66 -9.70 6.28 -99.14 -0.62 -10.32 16 13 C 0.09 1.15 0.76 -130.79 -0.10 1.05 16 14 C 0.07 0.88 2.50 -25.68 -0.06 0.82 16 15 H 0.07 0.97 7.66 -51.92 -0.40 0.57 16 16 C -0.15 -1.67 5.38 -24.63 -0.13 -1.80 16 17 C -0.15 -1.41 7.02 -25.11 -0.18 -1.59 16 18 C 0.04 0.43 7.70 37.73 0.29 0.72 16 19 O -0.36 -4.42 8.14 -35.23 -0.29 -4.70 16 20 C -0.11 -1.34 7.15 -25.92 -0.19 -1.53 16 21 C -0.14 -1.59 7.58 -25.92 -0.20 -1.78 16 22 C -0.12 -1.59 6.42 -25.92 -0.17 -1.76 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.02 0.40 7.17 -51.93 -0.37 0.03 16 29 H 0.07 1.26 7.46 -51.92 -0.39 0.87 16 30 H 0.34 4.64 7.44 -39.30 -0.29 4.35 16 31 H 0.08 0.84 7.90 -51.93 -0.41 0.43 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.75 7.76 -51.93 -0.40 0.35 16 39 H 0.09 1.09 6.47 -51.93 -0.34 0.75 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 42 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -29.93 327.07 -9.34 -39.27 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.63 Total: 0.97 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -1.44 Total: -20.49 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.11 Total: -36.80 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.29 Total: -4.70 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.93 -9.34 -39.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656524744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.189 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds