Wall clock time and date at job start Sun Mar 29 2020 23:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00146 * 2 1 4 4 H 1.48504 * 109.47163 * 270.00239 * 3 2 1 5 5 H 1.48507 * 109.46881 * 29.99821 * 3 2 1 6 6 H 1.48501 * 109.47321 * 150.00121 * 3 2 1 7 7 C 1.37875 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00354 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99688 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46938 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47264 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47201 * 179.97438 * 11 10 9 13 13 C 1.46902 * 110.99582 * 178.32202 * 12 11 10 14 14 C 1.52996 * 112.85409 * 291.39090 * 13 12 11 15 15 H 1.09009 * 110.54905 * 75.36790 * 14 13 12 16 16 C 1.54994 * 110.61861 * 312.49445 * 14 13 12 17 17 C 1.54983 * 102.01181 * 204.59082 * 16 14 13 18 18 C 1.54097 * 104.25506 * 20.66689 * 17 16 14 19 19 O 1.43742 * 107.29232 * 2.16492 * 18 17 16 20 20 C 1.53784 * 113.60918 * 160.08700 * 13 12 11 21 21 C 1.53782 * 87.08112 * 220.01747 * 20 13 12 22 22 C 1.53782 * 113.61498 * 62.59182 * 13 12 11 23 23 H 0.96995 * 120.00082 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46881 * 60.00761 * 9 7 2 25 25 H 1.08993 * 109.46944 * 299.99930 * 9 7 2 26 26 H 1.09004 * 109.47454 * 300.00207 * 10 9 7 27 27 H 1.09006 * 109.46996 * 60.00000 * 10 9 7 28 28 H 1.08993 * 109.47553 * 300.00364 * 11 10 9 29 29 H 1.09010 * 109.46738 * 60.00497 * 11 10 9 30 30 H 1.00894 * 110.99843 * 54.37438 * 12 11 10 31 31 H 1.09000 * 110.90921 * 322.66901 * 16 14 13 32 32 H 1.09002 * 110.90902 * 86.27382 * 16 14 13 33 33 H 1.09009 * 110.34463 * 262.02527 * 17 16 14 34 34 H 1.09002 * 110.57223 * 139.41843 * 17 16 14 35 35 H 1.09002 * 109.87790 * 242.74243 * 18 17 16 36 36 H 1.08993 * 109.88288 * 121.58728 * 18 17 16 37 37 H 1.08997 * 113.61864 * 334.56571 * 20 13 12 38 38 H 1.09000 * 113.61226 * 105.47347 * 20 13 12 39 39 H 1.08998 * 113.61687 * 270.88743 * 21 20 13 40 40 H 1.08999 * 113.61445 * 139.98261 * 21 20 13 41 41 H 1.09000 * 113.61635 * 254.52553 * 22 13 12 42 42 H 1.09004 * 113.61405 * 25.43059 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4349 -6.1036 -0.0030 13 6 1.7351 -7.3946 0.0377 14 6 1.0312 -7.6471 1.3725 15 1 0.1217 -7.0505 1.4443 16 6 1.9814 -7.3384 2.5575 17 6 1.3858 -8.2181 3.6860 18 6 0.5619 -9.2856 2.9402 19 8 0.7326 -9.0506 1.5324 20 6 2.5947 -8.5765 -0.4409 21 6 1.3343 -9.1062 -1.1450 22 6 0.8418 -7.6500 -1.1878 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8713 -3.6039 -0.8923 27 1 2.8726 -3.6047 0.8877 28 1 0.8546 -5.0450 0.8894 29 1 0.8527 -5.0447 -0.8906 30 1 3.0880 -6.0222 0.7617 31 1 3.0024 -7.6424 2.3268 32 1 1.9420 -6.2819 2.8226 33 1 0.7415 -7.6212 4.3317 34 1 2.1806 -8.6865 4.2664 35 1 -0.4912 -9.1937 3.2062 36 1 0.9256 -10.2805 3.1966 37 1 3.3900 -8.2881 -1.1280 38 1 2.9447 -9.2176 0.3682 39 1 0.7237 -9.7553 -0.5174 40 1 1.5299 -9.5301 -2.1299 41 1 -0.2232 -7.5430 -0.9817 42 1 1.1580 -7.1081 -2.0792 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656524744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:59 Heat of formation + Delta-G solvation = -62.348931 kcal Electronic energy + Delta-G solvation = -19365.060383 eV Core-core repulsion = 16537.023765 eV Total energy + Delta-G solvation = -2828.036619 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.51334 -38.82211 -36.76471 -34.98467 -33.18954 -32.30383 -30.06730 -28.04328 -26.71706 -25.37935 -24.04271 -22.90087 -22.22698 -21.87884 -19.48813 -18.47304 -17.81709 -17.34800 -16.60497 -16.41729 -16.30569 -15.79190 -15.39050 -15.21811 -14.64376 -14.34046 -14.06369 -13.78301 -13.43746 -13.12030 -12.85459 -12.73749 -12.68901 -12.57147 -12.47772 -12.29937 -12.13104 -11.82897 -11.70688 -11.56867 -11.37489 -11.24262 -11.04512 -10.94491 -10.64570 -10.55626 -9.41099 -8.20223 -6.31406 1.40123 1.41652 1.52749 2.40961 2.76328 3.13027 3.22259 3.46924 3.55967 3.77859 3.91944 3.95590 4.02924 4.15616 4.21150 4.32715 4.36803 4.43616 4.56627 4.70673 4.74702 4.81216 4.87474 4.90463 4.96637 4.97397 4.99965 5.10468 5.11654 5.12826 5.20487 5.23560 5.43071 5.51498 5.62102 5.74427 5.85174 5.88046 6.10584 6.26985 6.48504 6.85607 7.38037 8.91781 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.030518 B = 0.004194 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.278467 B = 6674.497227 C = 7104.899637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.092 4.092 11 C 0.073 3.927 12 N -0.659 5.659 13 C 0.084 3.916 14 C 0.072 3.928 15 H 0.051 0.949 16 C -0.152 4.152 17 C -0.149 4.149 18 C 0.038 3.962 19 O -0.375 6.375 20 C -0.103 4.103 21 C -0.125 4.125 22 C -0.129 4.129 23 H 0.263 0.737 24 H -0.011 1.011 25 H -0.010 1.010 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.020 0.980 29 H 0.059 0.941 30 H 0.343 0.657 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.821 -20.306 4.912 21.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.056 4.056 12 N -0.291 5.291 13 C -0.008 4.008 14 C 0.013 3.987 15 H 0.069 0.931 16 C -0.190 4.190 17 C -0.187 4.187 18 C -0.038 4.038 19 O -0.294 6.294 20 C -0.141 4.141 21 C -0.163 4.163 22 C -0.167 4.167 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.008 0.992 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.163 0.837 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.734 -20.363 4.068 21.098 hybrid contribution -0.501 1.422 1.112 1.873 sum 3.233 -18.941 5.179 19.901 Atomic orbital electron populations 1.70100 1.07847 1.27761 1.51782 1.25990 0.95759 1.03401 0.94700 0.85442 0.78691 0.78369 0.78519 1.19793 1.20706 1.18644 1.21699 0.93556 0.92357 1.50435 0.92170 1.18959 0.94403 0.93171 0.94632 1.21383 0.97992 0.92818 1.00812 1.21787 0.94205 0.90154 0.99439 1.60993 1.17328 1.00194 1.50547 1.22371 0.95932 0.90053 0.92414 1.23333 0.96569 0.83250 0.95588 0.93114 1.23150 1.00299 1.00758 0.94802 1.22931 1.00566 0.97162 0.98013 1.23327 0.99549 1.00208 0.80736 1.88864 1.91909 1.24267 1.24313 1.22764 0.96708 0.94640 0.99982 1.22679 0.97448 0.95300 1.00878 1.22999 0.98160 0.98037 0.97531 0.92788 0.99226 0.99176 0.92797 0.92971 0.96163 0.92244 0.83736 0.89520 0.90914 0.90519 0.88746 0.92382 0.88191 0.89614 0.90994 0.89316 0.90689 0.92766 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 3 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.54 -31.40 9.11 25.60 0.23 -31.17 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.09 -3.85 5.40 30.59 0.17 -3.69 16 11 C 0.07 2.57 5.34 86.30 0.46 3.03 16 12 N -0.66 -18.86 6.28 -467.57 -2.94 -21.80 16 13 C 0.08 2.12 0.76 4.05 0.00 2.13 16 14 C 0.07 1.75 2.50 31.27 0.08 1.83 16 15 H 0.05 1.42 7.66 -2.38 -0.02 1.40 16 16 C -0.15 -3.13 5.38 31.95 0.17 -2.96 16 17 C -0.15 -2.43 7.02 31.64 0.22 -2.21 16 18 C 0.04 0.66 7.70 72.35 0.56 1.22 16 19 O -0.37 -8.55 8.14 -148.98 -1.21 -9.76 16 20 C -0.10 -2.27 7.15 31.12 0.22 -2.05 16 21 C -0.13 -2.73 7.58 31.12 0.24 -2.49 16 22 C -0.13 -3.36 6.42 31.12 0.20 -3.16 16 23 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 24 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 25 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.02 0.72 7.17 -2.39 -0.02 0.70 16 29 H 0.06 2.21 7.46 -2.38 -0.02 2.19 16 30 H 0.34 9.05 7.44 -89.70 -0.67 8.38 16 31 H 0.09 1.66 7.90 -2.39 -0.02 1.64 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 1.50 7.76 -2.39 -0.02 1.48 16 39 H 0.09 2.00 6.47 -2.39 -0.02 1.98 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 42 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -63.92 327.07 1.62 -62.29 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.30 Total: 17.50 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 3.16 Total: -37.56 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -2.65 Total: -79.16 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -1.21 Total: -9.76 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -63.92 1.62 -62.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656524744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.057 kcal (2) G-P(sol) polarization free energy of solvation -63.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds