Wall clock time and date at job start Sun Mar 29 2020 23:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47869 * 2 1 4 4 N 1.46895 * 109.47114 * 299.94902 * 3 2 1 5 5 C 1.46897 * 110.99908 * 185.42861 * 4 3 2 6 6 C 1.53001 * 109.47463 * 174.57393 * 5 4 3 7 7 C 1.50701 * 115.54923 * 39.51802 * 6 5 4 8 8 H 1.07995 * 120.00207 * 268.65862 * 7 6 5 9 9 C 1.37879 * 119.99546 * 88.65539 * 7 6 5 10 10 N 1.31518 * 120.00026 * 179.83918 * 9 7 6 11 11 Si 1.86802 * 120.00372 * 359.84096 * 9 7 6 12 12 H 1.48501 * 109.46962 * 91.81276 * 11 9 7 13 13 H 1.48498 * 109.47031 * 211.81596 * 11 9 7 14 14 H 1.48504 * 109.46751 * 331.81352 * 11 9 7 15 15 C 1.52997 * 117.49637 * 253.81658 * 6 5 4 16 16 C 1.52994 * 117.50206 * 185.19394 * 6 5 4 17 17 C 1.53089 * 109.48144 * 120.02189 * 2 1 3 18 18 C 1.53180 * 109.16214 * 62.39852 * 17 2 1 19 19 C 1.53179 * 109.04567 * 56.95986 * 18 17 2 20 20 C 1.53088 * 109.16331 * 303.02785 * 19 18 17 21 21 O 1.42897 * 109.48077 * 239.97766 * 2 1 3 22 22 H 1.08995 * 109.47369 * 65.55190 * 1 2 3 23 23 H 1.08998 * 109.47231 * 185.55652 * 1 2 3 24 24 H 1.08999 * 109.46761 * 305.55411 * 1 2 3 25 25 H 1.09003 * 109.47129 * 59.95121 * 3 2 1 26 26 H 1.09000 * 109.46921 * 179.97438 * 3 2 1 27 27 H 1.00905 * 110.99909 * 61.47487 * 4 3 2 28 28 H 1.09008 * 109.47106 * 294.57368 * 5 4 3 29 29 H 1.08996 * 109.47421 * 54.57042 * 5 4 3 30 30 H 0.96997 * 120.00583 * 179.97438 * 10 9 7 31 31 H 1.08997 * 117.50272 * 359.97438 * 15 6 5 32 32 H 1.09010 * 117.49960 * 145.01817 * 15 6 5 33 33 H 1.08999 * 117.49923 * 214.97931 * 16 6 5 34 34 H 1.09000 * 117.49945 * 359.97438 * 16 6 5 35 35 H 1.08999 * 109.52195 * 182.28832 * 17 2 1 36 36 H 1.08997 * 109.52551 * 302.48343 * 17 2 1 37 37 H 1.09006 * 109.53263 * 297.09736 * 18 17 2 38 38 H 1.08999 * 109.62119 * 176.88079 * 18 17 2 39 39 H 1.09000 * 109.52193 * 183.11836 * 19 18 17 40 40 H 1.09003 * 109.51844 * 62.93823 * 19 18 17 41 41 H 1.09001 * 109.48201 * 297.62036 * 20 19 18 42 42 H 1.09003 * 109.48916 * 177.59499 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0403 1.4425 0.0000 4 7 1.5517 2.1347 -1.2000 5 6 2.1260 3.4830 -1.3005 6 6 1.7032 4.1200 -2.6258 7 6 0.2827 3.8521 -3.0517 8 1 0.0584 3.0029 -3.6801 9 6 -0.7306 4.6912 -2.6391 10 7 -1.9699 4.4592 -3.0134 11 14 -0.3433 6.1575 -1.5485 12 1 -0.0891 7.3506 -2.3952 13 1 -1.4954 6.4242 -0.6503 14 1 0.8624 5.8631 -0.7331 15 6 2.7616 4.2324 -3.7249 16 6 2.3004 5.4844 -2.9761 17 6 2.0406 -0.7221 1.2496 18 6 1.5763 -2.1813 1.2121 19 6 2.0769 -2.8321 -0.0811 20 6 1.5648 -2.0284 -1.2791 21 8 2.0066 -0.6740 -1.1664 22 1 -0.3634 0.4253 -0.9355 23 1 -0.3633 -1.0228 0.0995 24 1 -0.3633 0.5976 0.8361 25 1 1.6763 1.9566 0.8896 26 1 3.1303 1.4423 0.0005 27 1 0.5433 2.1693 -1.2121 28 1 1.7661 4.0939 -0.4725 29 1 3.2133 3.4188 -1.2588 30 1 -2.6828 5.0492 -2.7229 31 1 3.7591 3.8529 -3.5038 32 1 2.4305 4.1125 -4.7566 33 1 1.6659 6.1881 -3.5149 34 1 2.9942 5.9284 -2.2622 35 1 3.1298 -0.6871 1.2710 36 1 1.6420 -0.2357 2.1398 37 1 0.4872 -2.2181 1.2408 38 1 1.9819 -2.7167 2.0705 39 1 1.7044 -3.8546 -0.1423 40 1 3.1669 -2.8397 -0.0866 41 1 0.4752 -2.0551 -1.2958 42 1 1.9531 -2.4619 -2.2007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659632592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:08 Heat of formation + Delta-G solvation = -28.735151 kcal Electronic energy + Delta-G solvation = -19865.547472 eV Core-core repulsion = 17038.968456 eV Total energy + Delta-G solvation = -2826.579016 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.76979 -37.21085 -34.76033 -33.50282 -32.01127 -31.65063 -27.96649 -26.74786 -25.29730 -24.21242 -23.13457 -21.51301 -21.05045 -19.04933 -18.80365 -16.34670 -16.03768 -15.79082 -14.96986 -14.80726 -14.52630 -14.41349 -13.92038 -13.64216 -13.11512 -12.70641 -12.64353 -12.53096 -12.37845 -11.97500 -11.68131 -11.64572 -11.39273 -11.04673 -10.92982 -10.90024 -10.59423 -10.54888 -10.32697 -10.03558 -9.78914 -9.40603 -9.08067 -8.91237 -8.54009 -8.34500 -7.38617 -6.03960 -4.04184 3.31347 3.40717 3.46148 4.03979 4.47141 4.60739 4.83227 4.84794 4.93496 5.07075 5.20727 5.25285 5.30630 5.44460 5.52945 5.56969 5.70158 5.80362 5.82371 5.90677 5.94489 5.95011 5.97519 6.08004 6.12348 6.19428 6.24958 6.31488 6.33665 6.45691 6.59899 6.63897 6.66115 6.86431 7.12934 7.25768 7.62856 7.84453 8.00642 8.38782 8.65349 9.05035 9.60025 11.07728 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.028188 B = 0.005882 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.082403 B = 4759.277472 C = 4999.690062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.123 3.877 3 C 0.071 3.929 4 N -0.662 5.662 5 C 0.097 3.903 6 C 0.009 3.991 7 C -0.471 4.471 8 H 0.081 0.919 9 C 0.073 3.927 10 N -0.901 5.901 11 Si 0.876 3.124 12 H -0.280 1.280 13 H -0.298 1.298 14 H -0.259 1.259 15 C -0.174 4.174 16 C -0.210 4.210 17 C -0.143 4.143 18 C -0.122 4.122 19 C -0.155 4.155 20 C 0.055 3.945 21 O -0.347 6.347 22 H 0.080 0.920 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.031 0.969 26 H 0.068 0.932 27 H 0.357 0.643 28 H 0.017 0.983 29 H 0.046 0.954 30 H 0.262 0.738 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.055 -10.755 9.011 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.083 3.917 3 C -0.059 4.059 4 N -0.296 5.296 5 C -0.032 4.032 6 C 0.008 3.992 7 C -0.509 4.509 8 H 0.099 0.901 9 C -0.129 4.129 10 N -0.539 5.539 11 Si 0.704 3.296 12 H -0.207 1.207 13 H -0.225 1.225 14 H -0.183 1.183 15 C -0.211 4.211 16 C -0.247 4.247 17 C -0.182 4.182 18 C -0.159 4.159 19 C -0.193 4.193 20 C -0.023 4.023 21 O -0.266 6.266 22 H 0.099 0.901 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.179 0.821 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.434 -10.876 8.472 15.663 hybrid contribution -0.561 1.222 1.511 2.023 sum 6.873 -9.654 9.984 15.495 Atomic orbital electron populations 1.22479 0.95864 1.01957 1.03815 1.21426 0.93133 0.92137 0.84959 1.21885 1.00169 0.91293 0.92540 1.60226 1.14857 1.17996 1.36494 1.21568 0.96546 0.88320 0.96758 1.19371 0.94721 0.93217 0.91873 1.20282 0.87102 1.12403 1.31094 0.90093 1.24998 0.94853 0.97350 0.95661 1.69904 0.99732 1.38555 1.45685 0.86930 0.77708 0.83721 0.81204 1.20652 1.22506 1.18330 1.22784 0.98267 1.01805 0.98259 1.22970 1.04547 0.92564 1.04668 1.22162 1.01593 0.95873 0.98532 1.21605 1.01068 0.95686 0.97557 1.22196 1.01701 0.99371 0.96033 1.22532 0.98808 0.83360 0.97555 1.88155 1.72759 1.23066 1.42599 0.90136 0.92396 0.92094 0.95143 0.91333 0.82120 0.96487 0.93515 0.92804 0.91134 0.89850 0.89721 0.91333 0.91274 0.91249 0.91612 0.92019 0.91474 0.91388 0.93135 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 7.40 37.16 0.28 -2.42 16 2 C 0.12 1.83 0.87 -90.57 -0.08 1.75 16 3 C 0.07 1.18 4.89 -3.82 -0.02 1.17 16 4 N -0.66 -13.54 6.02 -113.78 -0.69 -14.22 16 5 C 0.10 2.08 5.65 -3.82 -0.02 2.06 16 6 C 0.01 0.22 1.21 -155.66 -0.19 0.03 16 7 C -0.47 -12.96 8.08 -34.44 -0.28 -13.24 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16 11 Si 0.88 21.67 24.98 -169.99 -4.25 17.42 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.26 -6.11 5.42 56.52 0.31 -5.80 16 15 C -0.17 -3.75 9.88 -26.73 -0.26 -4.01 16 16 C -0.21 -4.62 7.46 -26.74 -0.20 -4.82 16 17 C -0.14 -1.70 4.92 -26.59 -0.13 -1.83 16 18 C -0.12 -1.26 5.72 -26.55 -0.15 -1.41 16 19 C -0.16 -1.62 6.14 -26.59 -0.16 -1.79 16 20 C 0.05 0.70 6.52 37.20 0.24 0.95 16 21 O -0.35 -5.74 10.10 -35.23 -0.36 -6.10 16 22 H 0.08 1.40 7.00 -51.93 -0.36 1.03 16 23 H 0.06 0.74 5.02 -51.93 -0.26 0.48 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 27 H 0.36 7.89 6.13 -39.29 -0.24 7.65 16 28 H 0.02 0.37 6.61 -51.92 -0.34 0.03 16 29 H 0.05 0.92 7.88 -51.93 -0.41 0.52 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 32 H 0.08 1.82 8.14 -51.92 -0.42 1.40 16 33 H 0.08 1.96 7.02 -51.93 -0.36 1.59 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.67 6.50 -51.93 -0.34 0.33 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.64 6.47 -51.93 -0.34 0.30 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 315.48 15.07 4.75 4.75 Total: -1.00 -29.58 315.48 -8.21 -37.79 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.38 Total: 8.17 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -1.08 Total: -21.61 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.09 Total: -40.44 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.36 Total: -6.10 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.25 Total: 17.42 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.58 -8.21 -37.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659632592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.055 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds