Wall clock time and date at job start Sun Mar 29 2020 23:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47869 * 2 1 4 4 N 1.46895 * 109.47114 * 299.94902 * 3 2 1 5 5 C 1.46897 * 110.99908 * 185.42861 * 4 3 2 6 6 C 1.53001 * 109.47463 * 174.57393 * 5 4 3 7 7 C 1.50701 * 115.54923 * 39.51802 * 6 5 4 8 8 H 1.07995 * 120.00207 * 268.65862 * 7 6 5 9 9 C 1.37879 * 119.99546 * 88.65539 * 7 6 5 10 10 N 1.31518 * 120.00026 * 179.83918 * 9 7 6 11 11 Si 1.86802 * 120.00372 * 359.84096 * 9 7 6 12 12 H 1.48501 * 109.46962 * 91.81276 * 11 9 7 13 13 H 1.48498 * 109.47031 * 211.81596 * 11 9 7 14 14 H 1.48504 * 109.46751 * 331.81352 * 11 9 7 15 15 C 1.52997 * 117.49637 * 253.81658 * 6 5 4 16 16 C 1.52994 * 117.50206 * 185.19394 * 6 5 4 17 17 C 1.53089 * 109.48144 * 120.02189 * 2 1 3 18 18 C 1.53180 * 109.16214 * 62.39852 * 17 2 1 19 19 C 1.53179 * 109.04567 * 56.95986 * 18 17 2 20 20 C 1.53088 * 109.16331 * 303.02785 * 19 18 17 21 21 O 1.42897 * 109.48077 * 239.97766 * 2 1 3 22 22 H 1.08995 * 109.47369 * 65.55190 * 1 2 3 23 23 H 1.08998 * 109.47231 * 185.55652 * 1 2 3 24 24 H 1.08999 * 109.46761 * 305.55411 * 1 2 3 25 25 H 1.09003 * 109.47129 * 59.95121 * 3 2 1 26 26 H 1.09000 * 109.46921 * 179.97438 * 3 2 1 27 27 H 1.00905 * 110.99909 * 61.47487 * 4 3 2 28 28 H 1.09008 * 109.47106 * 294.57368 * 5 4 3 29 29 H 1.08996 * 109.47421 * 54.57042 * 5 4 3 30 30 H 0.96997 * 120.00583 * 179.97438 * 10 9 7 31 31 H 1.08997 * 117.50272 * 359.97438 * 15 6 5 32 32 H 1.09010 * 117.49960 * 145.01817 * 15 6 5 33 33 H 1.08999 * 117.49923 * 214.97931 * 16 6 5 34 34 H 1.09000 * 117.49945 * 359.97438 * 16 6 5 35 35 H 1.08999 * 109.52195 * 182.28832 * 17 2 1 36 36 H 1.08997 * 109.52551 * 302.48343 * 17 2 1 37 37 H 1.09006 * 109.53263 * 297.09736 * 18 17 2 38 38 H 1.08999 * 109.62119 * 176.88079 * 18 17 2 39 39 H 1.09000 * 109.52193 * 183.11836 * 19 18 17 40 40 H 1.09003 * 109.51844 * 62.93823 * 19 18 17 41 41 H 1.09001 * 109.48201 * 297.62036 * 20 19 18 42 42 H 1.09003 * 109.48916 * 177.59499 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0403 1.4425 0.0000 4 7 1.5517 2.1347 -1.2000 5 6 2.1260 3.4830 -1.3005 6 6 1.7032 4.1200 -2.6258 7 6 0.2827 3.8521 -3.0517 8 1 0.0584 3.0029 -3.6801 9 6 -0.7306 4.6912 -2.6391 10 7 -1.9699 4.4592 -3.0134 11 14 -0.3433 6.1575 -1.5485 12 1 -0.0891 7.3506 -2.3952 13 1 -1.4954 6.4242 -0.6503 14 1 0.8624 5.8631 -0.7331 15 6 2.7616 4.2324 -3.7249 16 6 2.3004 5.4844 -2.9761 17 6 2.0406 -0.7221 1.2496 18 6 1.5763 -2.1813 1.2121 19 6 2.0769 -2.8321 -0.0811 20 6 1.5648 -2.0284 -1.2791 21 8 2.0066 -0.6740 -1.1664 22 1 -0.3634 0.4253 -0.9355 23 1 -0.3633 -1.0228 0.0995 24 1 -0.3633 0.5976 0.8361 25 1 1.6763 1.9566 0.8896 26 1 3.1303 1.4423 0.0005 27 1 0.5433 2.1693 -1.2121 28 1 1.7661 4.0939 -0.4725 29 1 3.2133 3.4188 -1.2588 30 1 -2.6828 5.0492 -2.7229 31 1 3.7591 3.8529 -3.5038 32 1 2.4305 4.1125 -4.7566 33 1 1.6659 6.1881 -3.5149 34 1 2.9942 5.9284 -2.2622 35 1 3.1298 -0.6871 1.2710 36 1 1.6420 -0.2357 2.1398 37 1 0.4872 -2.2181 1.2408 38 1 1.9819 -2.7167 2.0705 39 1 1.7044 -3.8546 -0.1423 40 1 3.1669 -2.8397 -0.0866 41 1 0.4752 -2.0551 -1.2958 42 1 1.9531 -2.4619 -2.2007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659632592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:07 Heat of formation + Delta-G solvation = -48.243479 kcal Electronic energy + Delta-G solvation = -19866.393416 eV Core-core repulsion = 17038.968456 eV Total energy + Delta-G solvation = -2827.424960 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.86076 -38.95997 -36.17648 -34.49857 -34.17533 -32.88326 -29.04564 -28.34673 -27.19474 -25.38815 -24.36409 -23.25018 -22.19582 -20.81307 -19.98762 -18.20165 -17.32676 -17.07572 -16.75243 -16.03483 -15.82534 -15.58827 -15.34026 -15.20391 -14.73406 -14.26485 -14.07776 -13.80616 -13.54982 -13.33550 -13.16859 -12.98590 -12.87786 -12.48349 -12.46234 -12.07888 -12.00968 -11.87411 -11.82689 -11.53944 -11.35668 -10.88873 -10.87743 -10.56452 -10.21409 -10.13176 -8.95987 -8.22910 -6.26831 1.35259 1.38292 1.50636 2.39705 2.94946 3.09997 3.16341 3.53150 3.86003 3.97324 4.01097 4.03797 4.18700 4.21847 4.33293 4.43793 4.49497 4.56756 4.58471 4.65958 4.67607 4.77150 4.81537 4.88513 4.92482 4.93206 4.98964 5.02667 5.09210 5.12961 5.14237 5.26214 5.31862 5.36038 5.52056 5.53704 5.79618 6.35007 6.47501 6.58480 6.71763 6.84360 7.40073 8.92628 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.028188 B = 0.005882 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.082403 B = 4759.277472 C = 4999.690062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.122 3.878 3 C 0.069 3.931 4 N -0.678 5.678 5 C 0.105 3.895 6 C -0.019 4.019 7 C -0.463 4.463 8 H 0.030 0.970 9 C 0.021 3.979 10 N -0.949 5.949 11 Si 0.935 3.065 12 H -0.275 1.275 13 H -0.301 1.301 14 H -0.234 1.234 15 C -0.164 4.164 16 C -0.199 4.199 17 C -0.138 4.138 18 C -0.121 4.121 19 C -0.148 4.148 20 C 0.046 3.954 21 O -0.381 6.381 22 H 0.042 0.958 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.341 0.659 28 H 0.014 0.986 29 H 0.068 0.932 30 H 0.263 0.737 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.124 -10.915 11.229 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.082 3.918 3 C -0.060 4.060 4 N -0.310 5.310 5 C -0.025 4.025 6 C -0.020 4.020 7 C -0.501 4.501 8 H 0.048 0.952 9 C -0.176 4.176 10 N -0.590 5.590 11 Si 0.761 3.239 12 H -0.201 1.201 13 H -0.228 1.228 14 H -0.157 1.157 15 C -0.201 4.201 16 C -0.237 4.237 17 C -0.176 4.176 18 C -0.158 4.158 19 C -0.186 4.186 20 C -0.030 4.030 21 O -0.300 6.300 22 H 0.061 0.939 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.161 0.839 28 H 0.032 0.968 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.541 -11.052 10.692 18.097 hybrid contribution -1.215 1.167 0.705 1.827 sum 8.326 -9.885 11.397 17.231 Atomic orbital electron populations 1.22422 0.96328 1.02825 1.02036 1.21479 0.92753 0.91501 0.86081 1.22019 1.00412 0.92198 0.91412 1.60218 1.13791 1.17905 1.39069 1.21481 0.97643 0.88460 0.94896 1.19395 0.92981 0.95607 0.94048 1.20285 0.89774 1.10394 1.29642 0.95213 1.25744 0.94414 1.00273 0.97189 1.70052 1.00964 1.40150 1.47816 0.85964 0.78233 0.80075 0.79602 1.20130 1.22831 1.15745 1.22814 0.98818 1.01459 0.97054 1.22993 1.04270 0.91666 1.04722 1.22113 1.01696 0.96686 0.97088 1.21633 1.01258 0.94718 0.98187 1.22143 1.01660 0.99959 0.94827 1.22717 0.98719 0.82352 0.99240 1.88089 1.73280 1.24932 1.43742 0.93865 0.90665 0.91364 0.93869 0.90765 0.83856 0.96790 0.91401 0.92855 0.88302 0.91121 0.91111 0.88207 0.91029 0.89950 0.91465 0.89826 0.89362 0.91364 0.93547 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.24 7.40 71.98 0.53 -4.71 16 2 C 0.12 3.48 0.87 -10.76 -0.01 3.47 16 3 C 0.07 2.21 4.89 86.31 0.42 2.63 16 4 N -0.68 -27.67 6.02 -513.88 -3.10 -30.76 16 5 C 0.10 4.28 5.65 86.30 0.49 4.77 16 6 C -0.02 -0.89 1.21 -52.93 -0.06 -0.96 16 7 C -0.46 -26.27 8.08 25.60 0.21 -26.07 16 8 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 9 C 0.02 1.18 5.47 84.65 0.46 1.64 16 10 N -0.95 -59.08 13.96 21.45 0.30 -58.78 16 11 Si 0.94 44.51 24.98 68.60 1.71 46.23 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 14 H -0.23 -10.15 5.42 99.48 0.54 -9.61 16 15 C -0.16 -6.81 9.88 30.59 0.30 -6.50 16 16 C -0.20 -8.25 7.46 30.59 0.23 -8.02 16 17 C -0.14 -2.92 4.92 30.68 0.15 -2.76 16 18 C -0.12 -2.12 5.72 30.71 0.18 -1.95 16 19 C -0.15 -2.75 6.14 30.68 0.19 -2.56 16 20 C 0.05 1.16 6.52 72.01 0.47 1.63 16 21 O -0.38 -12.48 10.10 -148.98 -1.50 -13.99 16 22 H 0.04 1.58 7.00 -2.39 -0.02 1.56 16 23 H 0.07 1.88 5.02 -2.39 -0.01 1.87 16 24 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 2.27 8.08 -2.39 -0.02 2.25 16 27 H 0.34 15.63 6.13 -89.69 -0.55 15.08 16 28 H 0.01 0.58 6.61 -2.38 -0.02 0.56 16 29 H 0.07 2.47 7.88 -2.39 -0.02 2.46 16 30 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.10 3.53 8.08 -2.39 -0.02 3.51 16 32 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 33 H 0.07 3.13 7.02 -2.39 -0.02 3.12 16 34 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.17 6.50 -2.38 -0.02 1.16 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.05 1.17 6.47 -2.39 -0.02 1.15 16 42 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -65.63 315.48 1.23 -64.39 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.27 Total: 32.29 kcal Atomic # 6 Polarization: -42.93 SS G_CDS: 3.55 Total: -39.38 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -2.80 Total: -89.54 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -1.50 Total: -13.99 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.71 Total: 46.23 kcal Total: -65.63 1.23 -64.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659632592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.151 kcal (2) G-P(sol) polarization free energy of solvation -65.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds