Wall clock time and date at job start Sun Mar 29 2020 23:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46915 * 2 1 4 4 C 1.53004 * 109.47059 * 119.99297 * 2 1 3 5 5 C 1.53001 * 109.46700 * 60.00138 * 4 2 1 6 6 C 1.53005 * 109.47083 * 60.00238 * 5 4 2 7 7 C 1.53000 * 109.46827 * 299.99583 * 6 5 4 8 8 C 1.52994 * 109.47428 * 239.99911 * 2 1 3 9 9 H 1.09002 * 109.47386 * 180.02562 * 8 2 1 10 10 C 1.53000 * 109.47171 * 59.99758 * 8 2 1 11 11 N 1.46898 * 109.46771 * 63.11670 * 10 8 2 12 12 C 1.47475 * 111.00446 * 79.31033 * 11 10 8 13 13 C 1.53507 * 87.93457 * 138.70006 * 12 11 10 14 14 O 1.42900 * 114.17369 * 87.62405 * 13 12 11 15 15 C 1.50703 * 114.16811 * 220.32615 * 13 12 11 16 16 H 1.07999 * 119.99729 * 98.97426 * 15 13 12 17 17 C 1.37876 * 120.00225 * 278.96922 * 15 13 12 18 18 N 1.31507 * 119.99819 * 7.45366 * 17 15 13 19 19 Si 1.86802 * 119.99781 * 187.44940 * 17 15 13 20 20 H 1.48498 * 109.46899 * 94.99455 * 19 17 15 21 21 H 1.48507 * 109.46828 * 214.99161 * 19 17 15 22 22 H 1.48496 * 109.47501 * 334.99046 * 19 17 15 23 23 C 1.47482 * 110.99673 * 175.27992 * 11 10 8 24 24 H 1.08998 * 109.46915 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47145 * 300.00336 * 1 2 3 26 26 H 1.09005 * 109.46903 * 60.00105 * 1 2 3 27 27 H 1.08997 * 109.47390 * 300.00720 * 4 2 1 28 28 H 1.08998 * 109.46974 * 180.02562 * 4 2 1 29 29 H 1.08997 * 109.47621 * 300.00152 * 5 4 2 30 30 H 1.09005 * 109.47267 * 179.97438 * 5 4 2 31 31 H 1.09005 * 109.47171 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47485 * 59.99545 * 6 5 4 33 33 H 1.09001 * 109.47731 * 299.99940 * 7 6 5 34 34 H 1.09006 * 109.47098 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.46628 * 183.11163 * 10 8 2 36 36 H 1.08996 * 109.46996 * 303.11069 * 10 8 2 37 37 H 1.09004 * 113.47289 * 253.47017 * 12 11 10 38 38 H 1.09003 * 113.47345 * 23.93096 * 12 11 10 39 39 H 0.96702 * 114.00291 * 80.38993 * 14 13 12 40 40 H 0.97000 * 120.00304 * 179.97438 * 18 17 15 41 41 H 1.09004 * 113.47849 * 336.06278 * 23 11 10 42 42 H 1.09001 * 113.47908 * 106.52540 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.5300 -2.1636 1.2494 6 6 2.0401 -2.8850 0.0002 7 6 1.5301 -2.1638 -1.2490 8 6 2.0401 -0.7212 -1.2492 9 1 3.1301 -0.7216 -1.2489 10 6 1.5301 -0.0001 -2.4984 11 7 2.0802 1.3615 -2.5366 12 6 3.4706 1.3562 -3.0282 13 6 3.1284 2.6110 -3.8436 14 8 3.3050 3.8375 -3.1318 15 6 3.7271 2.6305 -5.2264 16 1 3.1274 2.3466 -6.0785 17 6 5.0404 3.0109 -5.4038 18 7 5.8127 3.2149 -4.3591 19 14 5.7227 3.2363 -7.1281 20 1 5.6267 4.6667 -7.5153 21 1 7.1450 2.8099 -7.1573 22 1 4.9391 2.4114 -8.0824 23 6 1.7008 2.0499 -3.7845 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6766 -0.2073 2.1393 28 1 3.1300 -0.7207 1.2496 29 1 0.4400 -2.1637 1.2494 30 1 1.8936 -2.6776 2.1393 31 1 1.6763 -3.9125 0.0000 32 1 3.1301 -2.8850 0.0002 33 1 0.4401 -2.1638 -1.2492 34 1 1.8938 -2.6774 -2.1390 35 1 1.8473 -0.5452 -3.3875 36 1 0.4415 0.0484 -2.4710 37 1 4.2084 1.5345 -2.2458 38 1 3.7099 0.4897 -3.6446 39 1 4.2218 4.1432 -3.0962 40 1 6.7368 3.4822 -4.4839 41 1 1.4677 1.3686 -4.6028 42 1 0.9386 2.8162 -3.6432 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170089708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:20 Heat of formation + Delta-G solvation = -58.598895 kcal Electronic energy + Delta-G solvation = -19915.315138 eV Core-core repulsion = 17087.441133 eV Total energy + Delta-G solvation = -2827.874005 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.26484 -39.77563 -36.24959 -34.19547 -33.25421 -32.51546 -29.65051 -27.90577 -26.96933 -26.51835 -24.12388 -23.08015 -21.75579 -20.51942 -19.29535 -19.06411 -17.18064 -16.77674 -16.60229 -16.44805 -15.78394 -15.36584 -15.34674 -14.66205 -14.40976 -14.07152 -13.94183 -13.50912 -13.48301 -13.38408 -13.15276 -12.80919 -12.53988 -12.49252 -12.32639 -12.28892 -12.15087 -12.03271 -11.87750 -11.50162 -11.06207 -10.98778 -10.79233 -10.76935 -10.62269 -10.08163 -9.59280 -8.25316 -6.41373 1.40454 1.43273 1.52780 2.36990 2.95701 3.25120 3.70095 3.81927 3.89109 4.02655 4.13919 4.27167 4.34816 4.39637 4.47200 4.53700 4.53907 4.59840 4.66661 4.72735 4.76640 4.87355 4.88755 4.91345 5.02162 5.11460 5.16466 5.17580 5.24825 5.26453 5.32107 5.39311 5.46097 5.52718 5.56041 5.65515 5.71819 5.76350 6.00357 6.39014 6.63267 7.31138 7.39418 8.80482 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.035943 B = 0.005074 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.831409 B = 5517.316206 C = 5666.925604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 H 0.047 0.953 4 C -0.114 4.114 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.111 4.111 8 C -0.068 4.068 9 H 0.041 0.959 10 C 0.022 3.978 11 N -0.466 5.466 12 C 0.003 3.997 13 C 0.219 3.781 14 O -0.576 6.576 15 C -0.561 4.561 16 H 0.063 0.937 17 C 0.030 3.970 18 N -0.914 5.914 19 Si 0.963 3.037 20 H -0.275 1.275 21 H -0.280 1.280 22 H -0.268 1.268 23 C 0.013 3.987 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.029 0.971 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.378 0.622 40 H 0.271 0.729 41 H 0.074 0.926 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.894 -11.069 7.789 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.096 4.096 3 H 0.066 0.934 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.153 4.153 7 C -0.149 4.149 8 C -0.087 4.087 9 H 0.059 0.941 10 C -0.107 4.107 11 N -0.189 5.189 12 C -0.127 4.127 13 C 0.178 3.822 14 O -0.385 6.385 15 C -0.599 4.599 16 H 0.081 0.919 17 C -0.171 4.171 18 N -0.553 5.553 19 Si 0.788 3.212 20 H -0.200 1.200 21 H -0.206 1.206 22 H -0.192 1.192 23 C -0.115 4.115 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.228 0.772 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.559 -10.824 8.594 16.257 hybrid contribution 1.612 0.064 -1.757 2.385 sum -6.947 -10.761 6.838 14.520 Atomic orbital electron populations 1.21876 0.94537 1.02102 1.01207 1.20898 0.96517 0.98353 0.93814 0.93411 1.21569 0.99768 0.96608 0.97225 1.21548 1.01361 0.94529 0.97756 1.21508 1.00260 0.99276 0.94264 1.21576 1.01452 0.93545 0.98306 1.20987 0.98628 0.95147 0.93934 0.94060 1.22828 1.00580 0.89896 0.97367 1.68837 1.04438 1.14366 1.31211 1.24247 0.91107 1.00310 0.97046 1.19722 0.91867 0.81547 0.89021 1.86049 1.33406 1.41310 1.77699 1.21788 0.97268 1.47247 0.93636 0.91910 1.25781 0.96690 0.93462 1.01146 1.69774 1.07684 1.46701 1.31183 0.85467 0.77464 0.78555 0.79669 1.20049 1.20588 1.19238 1.23904 0.98130 0.97639 0.91867 0.91001 0.92690 0.93642 0.91588 0.93534 0.90816 0.91227 0.90466 0.93102 0.90551 0.92481 0.95305 0.89819 0.93712 0.93197 0.77236 0.91920 0.90840 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.15 71.98 0.59 -2.75 16 2 C -0.08 -2.16 2.59 -10.79 -0.03 -2.19 16 3 H 0.05 1.67 7.69 -2.39 -0.02 1.66 16 4 C -0.11 -2.67 5.45 30.60 0.17 -2.50 16 5 C -0.11 -2.13 5.65 30.60 0.17 -1.96 16 6 C -0.12 -2.26 5.92 30.60 0.18 -2.08 16 7 C -0.11 -2.52 4.93 30.60 0.15 -2.37 16 8 C -0.07 -2.01 2.05 -10.79 -0.02 -2.03 16 9 H 0.04 1.42 7.80 -2.39 -0.02 1.40 16 10 C 0.02 0.73 3.90 86.30 0.34 1.07 16 11 N -0.47 -19.56 5.75 -928.32 -5.34 -24.90 16 12 C 0.00 0.12 6.64 83.57 0.55 0.68 16 13 C 0.22 11.38 1.41 -11.20 -0.02 11.37 16 14 O -0.58 -31.91 13.51 -148.98 -2.01 -33.92 16 15 C -0.56 -30.53 8.65 25.60 0.22 -30.31 16 16 H 0.06 3.34 7.82 -2.91 -0.02 3.32 16 17 C 0.03 1.59 5.33 84.66 0.45 2.05 16 18 N -0.91 -50.05 11.63 21.45 0.25 -49.80 16 19 Si 0.96 42.05 29.54 68.60 2.03 44.07 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 23 C 0.01 0.60 7.13 83.57 0.60 1.19 16 24 H 0.07 1.42 4.81 -2.39 -0.01 1.41 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.04 1.19 6.36 -2.38 -0.02 1.17 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.24 6.43 -2.39 -0.02 1.22 16 30 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.55 6.43 -2.39 -0.02 1.53 16 34 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.03 1.00 7.56 -2.38 -0.02 0.98 16 36 H 0.08 2.55 6.27 -2.39 -0.01 2.53 16 37 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.05 2.42 7.57 -2.39 -0.02 2.40 16 39 H 0.38 21.19 7.09 -74.06 -0.53 20.66 16 40 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 41 H 0.07 3.05 7.81 -2.39 -0.02 3.04 16 42 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -57.81 314.79 -1.26 -59.07 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.46 Total: 35.31 kcal Atomic # 6 Polarization: -33.19 SS G_CDS: 3.35 Total: -29.83 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: -5.09 Total: -74.70 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -2.01 Total: -33.92 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -57.81 -1.26 -59.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170089708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.468 kcal (2) G-P(sol) polarization free energy of solvation -57.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds