Wall clock time and date at job start Sun Mar 29 2020 23:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46911 * 2 1 4 4 C 1.53003 * 109.47405 * 119.99971 * 2 1 3 5 5 C 1.50701 * 109.46834 * 295.00102 * 4 2 1 6 6 H 1.08005 * 120.00076 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99894 * 180.27723 * 5 4 2 8 8 N 1.31515 * 119.99793 * 359.71895 * 7 5 4 9 9 Si 1.86791 * 119.99954 * 179.72460 * 7 5 4 10 10 H 1.48501 * 109.47571 * 59.99729 * 9 7 5 11 11 H 1.48498 * 109.46977 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47315 * 299.99681 * 9 7 5 13 13 C 1.52998 * 109.47200 * 240.00139 * 2 1 3 14 14 N 1.46895 * 109.47198 * 62.65357 * 13 2 1 15 15 C 1.46992 * 110.99931 * 176.04393 * 14 13 2 16 16 C 1.53062 * 109.52599 * 175.97388 * 15 14 13 17 17 O 1.43185 * 109.24002 * 58.63018 * 16 15 14 18 18 C 1.42672 * 113.43507 * 303.71996 * 17 16 15 19 19 C 1.53394 * 113.56509 * 283.62975 * 18 17 16 20 20 C 1.53844 * 86.96749 * 220.04153 * 19 18 17 21 21 C 1.53372 * 113.62733 * 185.67583 * 18 17 16 22 22 C 1.47168 * 110.99869 * 52.48725 * 14 13 2 23 23 H 1.08999 * 109.46928 * 185.03741 * 1 2 3 24 24 H 1.09006 * 109.46801 * 305.03612 * 1 2 3 25 25 H 1.08997 * 109.47638 * 65.03314 * 1 2 3 26 26 H 1.08999 * 109.47114 * 175.00176 * 4 2 1 27 27 H 1.09000 * 109.47212 * 54.99685 * 4 2 1 28 28 H 0.96991 * 120.00115 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.47528 * 182.66195 * 13 2 1 30 30 H 1.09001 * 109.46916 * 302.65734 * 13 2 1 31 31 H 1.08999 * 109.46008 * 295.98563 * 15 14 13 32 32 H 1.08994 * 109.46533 * 55.96010 * 15 14 13 33 33 H 1.09003 * 109.50868 * 178.56088 * 16 15 14 34 34 H 1.09000 * 109.50946 * 298.65576 * 16 15 14 35 35 H 1.09000 * 113.63842 * 334.56473 * 19 18 17 36 36 H 1.09005 * 113.62804 * 105.52394 * 19 18 17 37 37 H 1.08997 * 113.60553 * 270.58204 * 20 19 18 38 38 H 1.08995 * 113.68136 * 139.71537 * 20 19 18 39 39 H 1.09006 * 113.62735 * 254.41751 * 21 18 17 40 40 H 1.08994 * 113.63468 * 25.28547 * 21 18 17 41 41 H 1.09008 * 109.54724 * 299.95120 * 22 14 13 42 42 H 1.08996 * 109.55534 * 60.24186 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 1 1.0806 0.9746 2.3756 7 6 1.9978 -0.3989 3.7281 8 7 2.6810 -1.5160 3.8509 9 14 1.5103 0.5698 5.2489 10 1 0.0306 0.6772 5.3142 11 1 2.0095 -0.1276 6.4611 12 1 2.1027 1.9299 5.1805 13 6 2.0400 -0.7212 -1.2492 14 7 1.6034 0.0073 -2.4478 15 6 2.1540 -0.6043 -3.6657 16 6 1.5992 0.1172 -4.8963 17 8 1.9461 1.5047 -4.8261 18 6 1.4989 2.1415 -3.6302 19 6 -0.0027 2.4547 -3.6269 20 6 0.3605 3.7901 -2.9549 21 6 1.7457 3.6551 -3.6107 22 6 1.9756 1.4288 -2.3657 23 1 -0.3633 -1.0237 0.0902 24 1 -0.3633 0.5900 0.8415 25 1 -0.3634 0.4337 -0.9316 26 1 3.1264 -0.7994 1.2056 27 1 1.6054 -1.7198 1.2952 28 1 2.9314 -1.8370 4.7312 29 1 3.1289 -0.7628 -1.2258 30 1 1.6383 -1.7342 -1.2734 31 1 3.2407 -0.5204 -3.6548 32 1 1.8715 -1.6563 -3.7035 33 1 2.0274 -0.3199 -5.7984 34 1 0.5145 0.0133 -4.9210 35 1 -0.4276 2.5687 -4.6242 36 1 -0.5863 1.7897 -2.9903 37 1 0.3860 3.7382 -1.8664 38 1 -0.2166 4.6375 -3.3247 39 1 2.5679 3.9553 -2.9610 40 1 1.8061 4.1009 -4.6034 41 1 1.5032 1.8797 -1.4929 42 1 3.0588 1.5181 -2.2829 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602475636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:44 Heat of formation + Delta-G solvation = -33.093775 kcal Electronic energy + Delta-G solvation = -19844.702429 eV Core-core repulsion = 17017.934409 eV Total energy + Delta-G solvation = -2826.768020 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51115 -37.27056 -36.11607 -33.97218 -31.97983 -29.64007 -27.53334 -26.70537 -25.76625 -24.51070 -23.98763 -22.48805 -20.92548 -18.99811 -18.44696 -16.65202 -16.53238 -15.98734 -15.40547 -14.90816 -14.60769 -14.33506 -14.28914 -13.76407 -13.44527 -13.00464 -12.48432 -12.34020 -12.17372 -11.90263 -11.53088 -11.43269 -11.32960 -11.16022 -10.86613 -10.81064 -10.78411 -10.69336 -10.34219 -10.20777 -10.05313 -9.62532 -9.43538 -9.16526 -8.94678 -8.33413 -8.08678 -5.98393 -3.99788 3.33612 3.38213 3.40406 3.75632 3.98273 4.47086 4.57064 4.65291 4.76847 4.86795 5.04538 5.16810 5.32186 5.36135 5.37699 5.56359 5.68362 5.68917 5.73975 5.77401 5.82382 5.88362 5.91416 5.95073 6.07484 6.14090 6.24773 6.31084 6.39814 6.49288 6.63193 6.97398 7.07430 7.15393 7.23847 7.30693 7.36401 7.67244 7.83019 8.01206 8.44919 9.06144 9.63608 11.13137 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.029352 B = 0.005146 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.700469 B = 5439.472861 C = 6024.714229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.085 4.085 3 H 0.056 0.944 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.060 3.940 14 N -0.530 5.530 15 C 0.016 3.984 16 C 0.066 3.934 17 O -0.374 6.374 18 C 0.095 3.905 19 C -0.153 4.153 20 C -0.140 4.140 21 C -0.123 4.123 22 C 0.046 3.954 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.042 0.958 26 H 0.012 0.988 27 H 0.016 0.984 28 H 0.260 0.740 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 6.059 -16.456 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.104 4.104 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.067 4.067 14 N -0.254 5.254 15 C -0.113 4.113 16 C -0.011 4.011 17 O -0.293 6.293 18 C 0.055 3.945 19 C -0.191 4.191 20 C -0.178 4.178 21 C -0.161 4.161 22 C -0.082 4.082 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.030 0.970 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.398 5.990 -16.491 17.871 hybrid contribution 0.652 0.188 1.186 1.367 sum -2.746 6.178 -15.305 16.732 Atomic orbital electron populations 1.21601 0.95613 1.00995 0.99859 1.21302 0.96072 0.99030 0.94000 0.92569 1.19120 0.95900 0.95579 0.90354 1.21177 1.34659 1.08329 0.90985 0.92677 1.25016 0.95293 0.95098 0.99081 1.69952 1.38930 1.21251 1.23515 0.86692 0.78888 0.80118 0.82502 1.20256 1.21358 1.20320 1.22352 0.97341 0.97915 0.89112 1.62325 1.59013 1.01741 1.02349 1.22733 0.97682 0.99569 0.91295 1.22588 0.99839 0.81521 0.97114 1.87962 1.79456 1.22632 1.39262 1.22774 0.94481 0.92155 0.85114 1.23392 0.96832 0.97527 1.01309 1.22740 0.96555 0.97889 1.00583 1.23010 0.98126 0.93229 1.01698 1.22482 0.98886 0.89493 0.97364 0.93889 0.92925 0.93879 0.96969 0.96519 0.93027 0.95305 0.90906 0.94375 0.89882 0.89063 0.92400 0.90025 0.90203 0.89544 0.91031 0.90789 0.89304 0.88251 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.79 37.16 0.33 -2.02 16 2 C -0.09 -1.72 1.87 -90.62 -0.17 -1.89 16 3 H 0.06 1.15 6.16 -51.93 -0.32 0.83 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.28 8.47 -34.44 -0.29 -14.57 16 6 H 0.06 1.49 7.06 -52.48 -0.37 1.12 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 9 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.06 1.04 4.54 -3.83 -0.02 1.03 16 14 N -0.53 -8.02 4.11 -234.43 -0.96 -8.98 16 15 C 0.02 0.21 5.60 -3.74 -0.02 0.19 16 16 C 0.07 0.78 6.91 37.19 0.26 1.04 16 17 O -0.37 -5.16 10.58 -35.23 -0.37 -5.53 16 18 C 0.09 1.23 1.23 -90.34 -0.11 1.12 16 19 C -0.15 -1.81 7.13 -26.09 -0.19 -2.00 16 20 C -0.14 -1.50 7.73 -25.85 -0.20 -1.70 16 21 C -0.12 -1.38 7.50 -26.09 -0.20 -1.58 16 22 C 0.05 0.68 4.09 -3.79 -0.02 0.66 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.05 1.06 7.10 -51.93 -0.37 0.69 16 25 H 0.04 0.73 7.54 -51.93 -0.39 0.34 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.67 7.95 -51.93 -0.41 0.26 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 37 H 0.09 0.96 7.63 -51.93 -0.40 0.56 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.10 1.53 5.29 -51.92 -0.27 1.26 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -29.71 323.52 -9.17 -38.88 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -7.58 Total: -2.02 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -0.85 Total: -17.63 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: -0.23 Total: -35.19 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.37 Total: -5.53 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.71 -9.17 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.791 kcal (2) G-P(sol) polarization free energy of solvation -29.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds