Wall clock time and date at job start Sun Mar 29 2020 23:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46759 * 2 1 4 4 C 1.52998 * 109.47474 * 239.99540 * 2 1 3 5 5 C 1.53002 * 109.46720 * 65.76389 * 4 2 1 6 6 C 1.50699 * 109.46905 * 174.75308 * 5 4 2 7 7 H 1.07998 * 119.99999 * 0.02562 * 6 5 4 8 8 C 1.37886 * 120.00108 * 179.72755 * 6 5 4 9 9 N 1.31508 * 120.00106 * 180.27502 * 8 6 5 10 10 Si 1.86795 * 119.99688 * 0.27242 * 8 6 5 11 11 H 1.48509 * 109.46988 * 90.00347 * 10 8 6 12 12 H 1.48499 * 109.47391 * 209.99972 * 10 8 6 13 13 H 1.48496 * 109.47562 * 330.00497 * 10 8 6 14 14 N 1.46902 * 109.46729 * 119.99821 * 2 1 3 15 15 C 1.47227 * 110.99650 * 190.76590 * 14 2 1 16 16 C 1.52864 * 108.03865 * 170.64557 * 15 14 2 17 17 C 1.50943 * 111.45445 * 58.34136 * 16 15 14 18 18 H 1.09002 * 109.65971 * 188.15041 * 17 16 15 19 19 C 1.53962 * 112.73318 * 66.12493 * 17 16 15 20 20 O 1.44004 * 104.48141 * 200.59983 * 19 17 16 21 21 C 1.43359 * 109.97902 * 23.59455 * 20 19 17 22 22 C 1.54227 * 113.39878 * 311.08157 * 17 16 15 23 23 H 1.09006 * 112.37348 * 277.78676 * 22 17 16 24 24 C 1.46420 * 111.00273 * 68.13360 * 14 2 1 25 25 H 1.09002 * 109.47211 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47233 * 300.00515 * 1 2 3 27 27 H 1.08995 * 109.47011 * 60.00187 * 1 2 3 28 28 H 1.09003 * 109.46834 * 305.77166 * 4 2 1 29 29 H 1.08990 * 109.47358 * 185.76543 * 4 2 1 30 30 H 1.08994 * 109.47159 * 54.75676 * 5 4 2 31 31 H 1.09001 * 109.47556 * 294.75202 * 5 4 2 32 32 H 0.96993 * 120.00192 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.74692 * 290.27903 * 15 14 2 34 34 H 1.08997 * 109.74810 * 50.96023 * 15 14 2 35 35 H 1.09003 * 109.07987 * 178.84603 * 16 15 14 36 36 H 1.09000 * 109.08674 * 297.82861 * 16 15 14 37 37 H 1.08995 * 110.43673 * 319.35458 * 19 17 16 38 38 H 1.09005 * 110.43247 * 81.85522 * 19 17 16 39 39 H 1.08997 * 109.87850 * 240.73035 * 21 20 19 40 40 H 1.08994 * 109.87115 * 119.60352 * 21 20 19 41 41 H 1.09004 * 109.13349 * 307.64604 * 24 14 2 42 42 H 1.09001 * 109.13427 * 66.76180 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6518 0.0787 -2.4942 6 6 2.2633 -0.5618 -3.7136 7 1 2.8679 -1.4507 -3.6109 8 6 2.0457 -0.0164 -4.9612 9 7 2.5748 -0.5784 -6.0259 10 14 0.9993 1.5207 -5.1389 11 1 1.8648 2.7232 -5.0378 12 1 0.3217 1.5083 -6.4603 13 1 -0.0206 1.5528 -4.0600 14 7 2.0196 -0.6925 1.1995 15 6 3.4685 -0.4938 1.3689 16 6 3.8630 -1.0347 2.7431 17 6 3.5081 -2.4950 2.8844 18 1 3.6667 -2.8129 3.9149 19 6 4.3229 -3.3992 1.9416 20 8 3.5470 -4.6083 1.8426 21 6 2.1725 -4.3343 2.1441 22 6 2.0611 -2.8175 2.4591 23 1 1.3398 -2.6065 3.2486 24 6 1.7145 -2.1233 1.1407 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.5948 -1.7148 -1.3022 29 1 3.1251 -0.8116 -1.1990 30 1 2.0182 1.1007 -2.3983 31 1 0.5666 0.0897 -2.5952 32 1 2.4215 -0.1949 -6.9036 33 1 4.0078 -1.0349 0.5914 34 1 3.7041 0.5687 1.3090 35 1 4.9380 -0.9146 2.8782 36 1 3.3425 -0.4653 3.5131 37 1 4.4268 -2.9324 0.9622 38 1 5.3030 -3.6101 2.3695 39 1 1.8600 -4.9166 3.0109 40 1 1.5485 -4.5811 1.2852 41 1 0.6517 -2.2539 0.9368 42 1 2.2905 -2.5786 0.3350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172496625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:43 Heat of formation + Delta-G solvation = -56.856244 kcal Electronic energy + Delta-G solvation = -19941.914837 eV Core-core repulsion = 17114.116399 eV Total energy + Delta-G solvation = -2827.798438 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.69549 -37.91784 -34.86818 -32.96083 -31.71141 -31.16341 -29.16889 -27.60694 -25.56685 -24.63281 -23.42449 -21.88037 -21.11032 -19.81385 -18.39004 -16.86176 -16.69019 -15.92587 -15.38413 -15.18095 -14.72714 -14.26675 -14.07073 -13.71412 -13.46434 -13.33142 -12.95079 -12.68762 -12.48054 -12.17139 -11.84735 -11.71190 -11.34681 -11.24188 -11.13175 -10.79617 -10.78301 -10.70470 -10.31922 -10.22181 -9.93197 -9.82020 -9.65703 -9.49776 -9.19836 -8.53922 -7.94407 -6.04586 -4.02495 3.29558 3.37115 3.40339 3.78574 4.03546 4.32697 4.44444 4.60503 4.79773 5.00059 5.14013 5.17680 5.25585 5.27907 5.30701 5.40418 5.55124 5.56330 5.57576 5.65128 5.73621 5.80445 5.81337 5.91566 5.93936 6.07640 6.11956 6.17138 6.20101 6.27414 6.42100 6.52287 6.60200 6.84551 6.91184 7.24389 7.28190 7.36611 7.44155 7.79669 8.54081 9.00338 9.57947 11.09073 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.028643 B = 0.005331 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.317115 B = 5251.074602 C = 5586.769824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.074 3.926 3 H 0.078 0.922 4 C -0.130 4.130 5 C -0.009 4.009 6 C -0.520 4.520 7 H 0.069 0.931 8 C 0.066 3.934 9 N -0.904 5.904 10 Si 0.880 3.120 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.265 1.265 14 N -0.526 5.526 15 C 0.046 3.954 16 C -0.100 4.100 17 C -0.115 4.115 18 H 0.078 0.922 19 C 0.052 3.948 20 O -0.386 6.386 21 C 0.051 3.949 22 C -0.109 4.109 23 H 0.098 0.902 24 C 0.051 3.949 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.009 0.991 31 H 0.018 0.982 32 H 0.263 0.737 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.633 -1.788 19.584 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.034 4.034 3 H 0.096 0.904 4 C -0.169 4.169 5 C -0.047 4.047 6 C -0.558 4.558 7 H 0.087 0.913 8 C -0.135 4.135 9 N -0.543 5.543 10 Si 0.707 3.293 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.190 1.190 14 N -0.250 5.250 15 C -0.082 4.082 16 C -0.138 4.138 17 C -0.134 4.134 18 H 0.096 0.904 19 C -0.024 4.024 20 O -0.305 6.305 21 C -0.026 4.026 22 C -0.128 4.128 23 H 0.116 0.884 24 C -0.077 4.077 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.028 0.972 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.791 -1.766 19.753 19.847 hybrid contribution -0.149 0.614 -0.992 1.176 sum -0.940 -1.152 18.761 18.820 Atomic orbital electron populations 1.21829 0.94712 1.01659 1.01518 1.21910 0.95653 0.97963 0.87884 0.90369 1.22088 1.00095 0.99624 0.95114 1.19544 0.96601 0.95201 0.93378 1.21167 1.31660 1.13009 0.89997 0.91309 1.25045 0.95501 0.97123 0.95870 1.69917 1.45201 1.40702 0.98530 0.86774 0.81231 0.83797 0.77454 1.20326 1.21412 1.18976 1.62593 1.13584 1.10103 1.38673 1.22220 0.88783 1.01034 0.96146 1.20911 1.00728 0.93982 0.98199 1.21994 0.94852 0.96442 1.00122 0.90385 1.23387 0.94948 0.84842 0.99249 1.88461 1.18902 1.31582 1.91572 1.23443 0.83769 0.95002 1.00410 1.22701 0.97187 0.94269 0.98610 0.88351 1.22153 1.01642 0.88598 0.95281 0.92990 0.92865 0.91685 0.92728 0.92920 0.97246 0.96371 0.92771 0.93891 0.90518 0.91543 0.90909 0.91714 0.89950 0.91554 0.91032 0.90419 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.94 37.16 0.33 -1.75 16 2 C 0.07 1.17 2.38 -67.71 -0.16 1.01 16 3 H 0.08 1.26 7.94 -51.93 -0.41 0.85 16 4 C -0.13 -2.56 3.69 -26.73 -0.10 -2.66 16 5 C -0.01 -0.22 3.68 -27.88 -0.10 -0.32 16 6 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 7 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 8 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 10 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 14 N -0.53 -7.29 4.63 -226.88 -1.05 -8.34 16 15 C 0.05 0.59 4.96 -3.72 -0.02 0.57 16 16 C -0.10 -1.03 5.55 -27.83 -0.15 -1.18 16 17 C -0.12 -1.21 2.98 -90.51 -0.27 -1.48 16 18 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 19 C 0.05 0.62 6.75 37.66 0.25 0.88 16 20 O -0.39 -5.36 11.37 -35.23 -0.40 -5.76 16 21 C 0.05 0.58 7.09 38.39 0.27 0.86 16 22 C -0.11 -1.20 3.80 -88.76 -0.34 -1.54 16 23 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 24 C 0.05 0.69 3.24 -4.10 -0.01 0.67 16 25 H 0.05 0.75 6.47 -51.93 -0.34 0.41 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.04 6.71 -51.93 -0.35 0.69 16 28 H 0.05 1.10 6.83 -51.93 -0.35 0.74 16 29 H 0.05 1.07 6.72 -51.93 -0.35 0.72 16 30 H 0.01 0.22 7.58 -51.93 -0.39 -0.17 16 31 H 0.02 0.43 5.90 -51.93 -0.31 0.12 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.04 0.61 5.53 -51.93 -0.29 0.33 16 34 H 0.08 0.95 7.96 -51.93 -0.41 0.54 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.86 6.19 -51.93 -0.32 0.54 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.83 7.73 -51.93 -0.40 0.43 16 41 H 0.08 1.03 6.22 -51.93 -0.32 0.71 16 42 H 0.05 0.71 5.71 -51.93 -0.30 0.41 16 LS Contribution 307.14 15.07 4.63 4.63 Total: -1.00 -30.97 307.14 -8.53 -39.50 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -7.09 Total: -1.31 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -0.73 Total: -18.44 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.28 Total: -35.79 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.40 Total: -5.76 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.97 -8.53 -39.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.355 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds