Wall clock time and date at job start Sun Mar 29 2020 23:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46759 * 2 1 4 4 C 1.52998 * 109.47474 * 239.99540 * 2 1 3 5 5 C 1.53002 * 109.46720 * 65.76389 * 4 2 1 6 6 C 1.50699 * 109.46905 * 174.75308 * 5 4 2 7 7 H 1.07998 * 119.99999 * 0.02562 * 6 5 4 8 8 C 1.37886 * 120.00108 * 179.72755 * 6 5 4 9 9 N 1.31508 * 120.00106 * 180.27502 * 8 6 5 10 10 Si 1.86795 * 119.99688 * 0.27242 * 8 6 5 11 11 H 1.48509 * 109.46988 * 90.00347 * 10 8 6 12 12 H 1.48499 * 109.47391 * 209.99972 * 10 8 6 13 13 H 1.48496 * 109.47562 * 330.00497 * 10 8 6 14 14 N 1.46902 * 109.46729 * 119.99821 * 2 1 3 15 15 C 1.47227 * 110.99650 * 190.76590 * 14 2 1 16 16 C 1.52864 * 108.03865 * 170.64557 * 15 14 2 17 17 C 1.50943 * 111.45445 * 58.34136 * 16 15 14 18 18 H 1.09002 * 109.65971 * 188.15041 * 17 16 15 19 19 C 1.53962 * 112.73318 * 66.12493 * 17 16 15 20 20 O 1.44004 * 104.48141 * 200.59983 * 19 17 16 21 21 C 1.43359 * 109.97902 * 23.59455 * 20 19 17 22 22 C 1.54227 * 113.39878 * 311.08157 * 17 16 15 23 23 H 1.09006 * 112.37348 * 277.78676 * 22 17 16 24 24 C 1.46420 * 111.00273 * 68.13360 * 14 2 1 25 25 H 1.09002 * 109.47211 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47233 * 300.00515 * 1 2 3 27 27 H 1.08995 * 109.47011 * 60.00187 * 1 2 3 28 28 H 1.09003 * 109.46834 * 305.77166 * 4 2 1 29 29 H 1.08990 * 109.47358 * 185.76543 * 4 2 1 30 30 H 1.08994 * 109.47159 * 54.75676 * 5 4 2 31 31 H 1.09001 * 109.47556 * 294.75202 * 5 4 2 32 32 H 0.96993 * 120.00192 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.74692 * 290.27903 * 15 14 2 34 34 H 1.08997 * 109.74810 * 50.96023 * 15 14 2 35 35 H 1.09003 * 109.07987 * 178.84603 * 16 15 14 36 36 H 1.09000 * 109.08674 * 297.82861 * 16 15 14 37 37 H 1.08995 * 110.43673 * 319.35458 * 19 17 16 38 38 H 1.09005 * 110.43247 * 81.85522 * 19 17 16 39 39 H 1.08997 * 109.87850 * 240.73035 * 21 20 19 40 40 H 1.08994 * 109.87115 * 119.60352 * 21 20 19 41 41 H 1.09004 * 109.13349 * 307.64604 * 24 14 2 42 42 H 1.09001 * 109.13427 * 66.76180 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6518 0.0787 -2.4942 6 6 2.2633 -0.5618 -3.7136 7 1 2.8679 -1.4507 -3.6109 8 6 2.0457 -0.0164 -4.9612 9 7 2.5748 -0.5784 -6.0259 10 14 0.9993 1.5207 -5.1389 11 1 1.8648 2.7232 -5.0378 12 1 0.3217 1.5083 -6.4603 13 1 -0.0206 1.5528 -4.0600 14 7 2.0196 -0.6925 1.1995 15 6 3.4685 -0.4938 1.3689 16 6 3.8630 -1.0347 2.7431 17 6 3.5081 -2.4950 2.8844 18 1 3.6667 -2.8129 3.9149 19 6 4.3229 -3.3992 1.9416 20 8 3.5470 -4.6083 1.8426 21 6 2.1725 -4.3343 2.1441 22 6 2.0611 -2.8175 2.4591 23 1 1.3398 -2.6065 3.2486 24 6 1.7145 -2.1233 1.1407 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.5948 -1.7148 -1.3022 29 1 3.1251 -0.8116 -1.1990 30 1 2.0182 1.1007 -2.3983 31 1 0.5666 0.0897 -2.5952 32 1 2.4215 -0.1949 -6.9036 33 1 4.0078 -1.0349 0.5914 34 1 3.7041 0.5687 1.3090 35 1 4.9380 -0.9146 2.8782 36 1 3.3425 -0.4653 3.5131 37 1 4.4268 -2.9324 0.9622 38 1 5.3030 -3.6101 2.3695 39 1 1.8600 -4.9166 3.0109 40 1 1.5485 -4.5811 1.2852 41 1 0.6517 -2.2539 0.9368 42 1 2.2905 -2.5786 0.3350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172496625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:43 Heat of formation + Delta-G solvation = -77.877153 kcal Electronic energy + Delta-G solvation = -19942.826372 eV Core-core repulsion = 17114.116399 eV Total energy + Delta-G solvation = -2828.709973 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.68754 -39.10281 -36.21236 -34.83779 -32.88249 -32.56726 -30.61304 -28.58691 -27.26741 -25.86000 -24.43478 -23.14342 -22.60697 -21.05779 -19.55897 -18.91400 -17.73714 -16.95575 -16.53262 -16.43189 -16.00580 -15.88795 -15.54957 -14.97425 -14.70816 -14.52310 -14.36978 -14.11783 -13.69057 -13.45708 -13.13905 -13.08062 -12.71670 -12.57489 -12.35176 -12.17851 -12.14154 -11.78157 -11.72528 -11.57627 -11.46430 -11.39290 -11.24401 -11.02871 -10.78689 -10.50763 -9.19322 -8.32771 -6.37761 1.33590 1.35940 1.48261 2.33726 2.83549 2.97748 3.02563 3.43610 3.69840 3.88303 3.95714 4.06629 4.16136 4.21862 4.24525 4.34992 4.41566 4.46326 4.57877 4.63883 4.70278 4.71972 4.75574 4.80852 4.89202 4.94829 4.97869 5.00659 5.10858 5.14743 5.17951 5.23955 5.31784 5.34926 5.44880 5.55026 5.65000 5.98155 6.11929 6.15460 6.26272 6.70211 7.27008 8.84569 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.028643 B = 0.005331 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.317115 B = 5251.074602 C = 5586.769824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.080 3.920 3 H 0.083 0.917 4 C -0.118 4.118 5 C -0.004 4.004 6 C -0.536 4.536 7 H 0.020 0.980 8 C 0.002 3.998 9 N -0.954 5.954 10 Si 0.955 3.045 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.242 1.242 14 N -0.514 5.514 15 C 0.040 3.960 16 C -0.093 4.093 17 C -0.109 4.109 18 H 0.102 0.898 19 C 0.047 3.953 20 O -0.412 6.412 21 C 0.046 3.954 22 C -0.101 4.101 23 H 0.122 0.878 24 C 0.053 3.947 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.034 0.966 30 H 0.018 0.982 31 H 0.026 0.974 32 H 0.267 0.733 33 H 0.019 0.981 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.977 -0.066 22.336 22.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.101 0.899 4 C -0.157 4.157 5 C -0.042 4.042 6 C -0.574 4.574 7 H 0.039 0.961 8 C -0.195 4.195 9 N -0.595 5.595 10 Si 0.777 3.223 11 H -0.190 1.190 12 H -0.209 1.209 13 H -0.165 1.165 14 N -0.237 5.237 15 C -0.088 4.088 16 C -0.130 4.130 17 C -0.128 4.128 18 H 0.120 0.880 19 C -0.029 4.029 20 O -0.332 6.332 21 C -0.031 4.031 22 C -0.120 4.120 23 H 0.140 0.860 24 C -0.076 4.076 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.037 0.963 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.057 0.943 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -2.131 -0.054 22.533 22.633 hybrid contribution 0.362 -0.046 -1.902 1.936 sum -1.769 -0.100 20.631 20.707 Atomic orbital electron populations 1.21788 0.93416 1.01960 1.02131 1.21809 0.96656 0.97699 0.86631 0.89928 1.21936 0.98975 0.98967 0.95816 1.19477 0.96473 0.95552 0.92680 1.21528 1.31408 1.11905 0.92599 0.96133 1.26105 0.97000 1.01180 0.95195 1.70084 1.47094 1.42954 0.99341 0.85591 0.79703 0.78773 0.78198 1.18985 1.20927 1.16473 1.62693 1.14250 1.10115 1.36637 1.22339 0.87832 1.01273 0.97324 1.20882 1.02021 0.93679 0.96452 1.22009 0.93797 0.96229 1.00754 0.87998 1.23466 0.96038 0.84744 0.98639 1.88431 1.20158 1.32697 1.91892 1.23578 0.82684 0.95834 1.00973 1.22704 0.98234 0.93388 0.97636 0.86019 1.22162 1.01123 0.88267 0.96000 0.92911 0.90575 0.92657 0.94064 0.94743 0.96351 0.95568 0.92468 0.96315 0.89971 0.89835 0.89490 0.94297 0.88272 0.89150 0.92087 0.90344 0.96882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.94 71.98 0.64 -3.09 16 2 C 0.08 2.47 2.38 44.92 0.11 2.57 16 3 H 0.08 2.50 7.94 -2.39 -0.02 2.48 16 4 C -0.12 -4.74 3.69 30.59 0.11 -4.63 16 5 C 0.00 -0.19 3.68 29.85 0.11 -0.08 16 6 C -0.54 -32.12 9.66 25.60 0.25 -31.87 16 7 H 0.02 1.37 7.99 -2.91 -0.02 1.35 16 8 C 0.00 0.10 5.47 84.66 0.46 0.56 16 9 N -0.95 -61.48 13.96 21.45 0.30 -61.18 16 10 Si 0.95 44.73 27.47 68.60 1.88 46.61 16 11 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 14 N -0.51 -13.50 4.63 -871.70 -4.04 -17.54 16 15 C 0.04 0.99 4.96 86.20 0.43 1.42 16 16 C -0.09 -1.65 5.55 29.88 0.17 -1.49 16 17 C -0.11 -2.02 2.98 -10.72 -0.03 -2.05 16 18 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 19 C 0.05 1.11 6.75 72.31 0.49 1.59 16 20 O -0.41 -11.37 11.37 -148.98 -1.69 -13.06 16 21 C 0.05 1.01 7.09 72.78 0.52 1.52 16 22 C -0.10 -2.02 3.80 -9.59 -0.04 -2.06 16 23 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 24 C 0.05 1.38 3.24 86.39 0.28 1.66 16 25 H 0.05 1.43 6.47 -2.39 -0.02 1.41 16 26 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.05 1.63 6.71 -2.39 -0.02 1.61 16 28 H 0.04 1.73 6.83 -2.39 -0.02 1.72 16 29 H 0.03 1.48 6.72 -2.39 -0.02 1.46 16 30 H 0.02 0.84 7.58 -2.39 -0.02 0.82 16 31 H 0.03 1.21 5.90 -2.39 -0.01 1.19 16 32 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 33 H 0.02 0.55 5.53 -2.39 -0.01 0.54 16 34 H 0.08 1.92 7.96 -2.39 -0.02 1.90 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.04 1.10 6.19 -2.39 -0.01 1.08 16 38 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.43 7.73 -2.39 -0.02 1.41 16 41 H 0.08 2.02 6.22 -2.39 -0.01 2.00 16 42 H 0.01 0.42 5.71 -2.39 -0.01 0.41 16 Total: -1.00 -69.39 307.14 0.87 -68.52 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.93 Total: 12.60 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 3.49 Total: -35.93 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -3.74 Total: -78.73 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -1.69 Total: -13.06 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -69.39 0.87 -68.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.356 kcal (2) G-P(sol) polarization free energy of solvation -69.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds